Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000094

Physical Location & Seq

Genomic Coordinates Forward (+)

17108359 .. 17109684

Gene Structure 1326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G016650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGAAAGGGAATTCATCTCGTTAGTCCAAGGGACTAAGAGTGTGAGGGAGTATGAAGCTGAGTTCTCAAGGTTGTATCGCTTTGTGAGGCAGATGGATGCTGAGAGCTTAGCTATGAAGTTTCAGTGGGGACTGAATGCTTCAATCCGGCGCGATGTCGCTGTTCTCGGACTGAAGACGGTGGAGCTCATTTTCGTTAAGGCTATGGCCATTGAGCAGGAGAACTTGACTCTCCAAGAACACGAATCGGCTGAGAGGGATTTCCAAAGAAAGGGAAAGGCAACTGCGGGGAGCAGTAAGACATCTGGGAATCGAGGTGGATTCTGGAAGAGACAGAGGACTAATCAGCAGGCACCAGCTAGGGCTGCAGCTGCACCTGCTAGGGTTGCACCTAATAGGCCGGTGGCAAACCCGAAGTGTTTCAATTGCAATGAGATGGGCCATGTTGCTCGAGATTGCACGAAACCTAAGAACTTGGCATGCTTCACATGTGGCCAGACGGGGCACTTCTCAAGGGATTGTACCCAGCAGCGTAGGGGACAAGGAAATCAGCAGAGGCATCTACCTCCGGGAAATGCTAGGGTGTTTGCTATTGGTCAGCAGAATGCCGGAGTGGAAGGTACCTTATCCTTATTTGATTTCTTTGCTAGGGTGTTATTTGATACGGGAGCGTCCCACTCTTTCATATCTAGTTCTGTGGTTGATATGTTAGGTTTAACTCCTAGGCCTCTTGCTAGATCCTTGTGTGTTATTTCCCCACTTGGTGTTTCCCTTGAGCTTGATAAGTTTTGTGATGCTTGTCCAATTGTGATTGGTGGTAAGGAGTTTACCGCGGCCTTGATTGTATTAGCAGATCATAAGTATGATGTCATTTTGGGTGTTGATTGGCTGAGGCCAAATCATGCTATGATTGATTGCTTTGAAATGGTAGTGTCATTTCATATACCTGGGCAGCCGGTGTTTAGTTATCGGTGTCTTAGGTCAGATACTGCTTTAAGGGCAGGATTCTTAGCTCATGTGGAGTCAGTGAGTTGTACAGCGGTTATGGCAGAGATTTCTGTGGTTTCCGAGTACAGTGATGTATTTCAGGAGATACCAGGATTACCTCCGAGGAGGGAAGTGGATTTTGCTATTGATGTGATACCAGGTACTGCACCTGTATCTATGGCACCATTTCGGATGGCACCAACTGAACTTAATGAGTTGAAGGAGCAAATTGATGGTTTACTTGAGCAAGGGTTCATTAGACCTAGTACTTCTCCTTGGGGTGCACCTGTGGTGTTTGCGAAGAAGAGAGATGGTTCACTAAGGTTGTGTTTGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

441

Amino Acids

48.67

Weight (kDa)

8.53

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Retrotrans_gag	PF03732	1 - 46	3.9e-07	Retrotransposon gag protein
zf-CCHC	PF00098	139 - 155	8.4e-08	Zinc knuckle
zf-CCHC	PF00098	160 - 176	7.5e-08	Zinc knuckle
RVP_2	PF08284	202 - 313	3.2e-30	Retroviral aspartyl protease
gag-asp_proteas	PF13975	217 - 298	6.3e-06	gag-polyprotein putative aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42190
fragaria_vesca	FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica	MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica	Prupe.7G030900_v2.0.a1
pyrus_communis	pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis	RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora	Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii	Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa	Rorug06G0233600
rosa_samantha	Rh3CG302700 Rh6DG286700
rosa_wichuraiana	Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	385
Acc36I	ACCTGC	1 cut(s)	385
Acc65I	GGTACC	1 cut(s)	620
AccB1I	GGYRCC	4 cut(s)	352, 620, 1168, 1183
AccII	CGCG	2 cut(s)	153, 833
AciI	CCGC	4 cut(s)	287, 831, 833, 1040
AclWI	GGATC	1 cut(s)	732
AcoI	YGGCCR	2 cut(s)	207, 493
AcsI	RAATTY	1 cut(s)	11
AcuI	CTGAAG	1 cut(s)	194
AdeI	CACNNNGTG	1 cut(s)	764
AfaI	GTAC	6 cut(s)	523, 622, 1036, 1073, 1150, 1255
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflIII	ACRYGT	1 cut(s)	488
AgsI	TTSAA	4 cut(s)	144, 424, 923, 1207
AjnI	CCWGG	3 cut(s)	946, 1096, 1144
AluBI	AGCT	8 cut(s)	59, 108, 113, 187, 359, 371, 778, 1013
AluI	AGCT	8 cut(s)	59, 108, 113, 187, 359, 371, 778, 1013
Alw21I	GWGCWC	2 cut(s)	189, 1273
Alw26I	GTCTC	1 cut(s)	325
Alw44I	GTGCAC	1 cut(s)	1269
AlwI	GGATC	1 cut(s)	732
AlwNI	CAGNNNCTG	2 cut(s)	989, 1151
Ama87I	CYCGRG	1 cut(s)	450
AoxI	GGCC	7 cut(s)	207, 398, 439, 493, 725, 834, 893
ApaLI	GTGCAC	1 cut(s)	1269
ApeKI	GCWGC	5 cut(s)	365, 368, 371, 529, 952
ApoI	RAATTY	1 cut(s)	11
Asp700I	GAANNNNTTC	1 cut(s)	419
Asp718I	GGTACC	1 cut(s)	620
AspA2I	CCTAGG	1 cut(s)	722
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	439
AsuC2I	CCSGG	1 cut(s)	570
AvaI	CYCGRG	1 cut(s)	450
AvrII	CCTAGG	1 cut(s)	722
BaeGI	GKGCMC	2 cut(s)	507, 1273
BalI	TGGCCA	2 cut(s)	209, 495
BanI	GGYRCC	4 cut(s)	352, 620, 1168, 1183
BanII	GRGCYC	1 cut(s)	189
BbsI	GAAGAC	1 cut(s)	182
Bbv12I	GWGCWC	2 cut(s)	189, 1273
BbvCI	CCTCAGC	1 cut(s)	890
BbvI	GCAGC	5 cut(s)	352, 358, 380, 541, 964
BccI	CCATC	5 cut(s)	88, 430, 1174, 1214, 1292
BciT130I	CCWGG	3 cut(s)	948, 1098, 1146
BcnI	CCSGG	1 cut(s)	570
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	8 cut(s)	360, 381, 579, 648, 690, 723, 735, 1251
BfmI	CTRYAG	1 cut(s)	366
BfuAI	ACCTGC	1 cut(s)	385
BisI	GCNGC	6 cut(s)	366, 369, 372, 530, 834, 953
BlnI	CCTAGG	1 cut(s)	722
BlpI	GCTNAGC	1 cut(s)	109
BlsI	GCNGC	6 cut(s)	367, 370, 373, 531, 835, 954
BmcAI	AGTACT	1 cut(s)	1255
Bme1390I	CCNGG	4 cut(s)	570, 948, 1098, 1146
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	1 cut(s)	439
BmiI	GGNNCC	4 cut(s)	354, 622, 1170, 1185
BmrFI	CCNGG	4 cut(s)	570, 948, 1098, 1146
BmsI	GCATC	3 cut(s)	88, 568, 784
BpiI	GAAGAC	1 cut(s)	182
Bpu10I	CCTNAGC	1 cut(s)	890
Bpu1102I	GCTNAGC	1 cut(s)	109
BpuEI	CTTGAG	4 cut(s)	52, 496, 794, 1250
BpuMI	CCSGG	1 cut(s)	570
BsaJI	CCNNGG	6 cut(s)	28, 722, 831, 947, 1109, 1262
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	2 cut(s)	400, 955
Bse3DI	GCAATG	1 cut(s)	436
BseBI	CCWGG	3 cut(s)	948, 1098, 1146
BseDI	CCNNGG	6 cut(s)	28, 722, 831, 947, 1109, 1262
BseGI	GGATG	2 cut(s)	103, 1185
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	436
BseMII	CTCAG	4 cut(s)	51, 93, 243, 881
BseRI	GAGGAG	1 cut(s)	1126
BseSI	GKGCMC	2 cut(s)	507, 1273
BseXI	GCAGC	5 cut(s)	352, 358, 380, 541, 964
BseYI	CCCAGC	1 cut(s)	525
BsgI	GTGCAG	2 cut(s)	357, 1137
Bsh1236I	CGCG	2 cut(s)	153, 833
BshFI	GGCC	7 cut(s)	209, 400, 441, 495, 727, 836, 895
BshNI	GGYRCC	4 cut(s)	352, 620, 1168, 1183
BsiHKAI	GWGCWC	2 cut(s)	189, 1273
BsiHKCI	CYCGRG	1 cut(s)	450
BsiSI	CCGG	5 cut(s)	148, 401, 569, 609, 956
BslFI	GGGAC	4 cut(s)	46, 144, 552, 658
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	325
BsmFI	GGGAC	4 cut(s)	46, 144, 552, 658
BsmI	GAATGC	2 cut(s)	142, 610
BsnI	GGCC	7 cut(s)	209, 400, 441, 495, 727, 836, 895
BsoBI	CYCGRG	1 cut(s)	450
Bsp1286I	GDGCHC	3 cut(s)	189, 507, 1273
Bsp1407I	TGTACA	1 cut(s)	1034
Bsp143I	GATC	2 cut(s)	737, 853
Bsp1720I	GCTNAGC	1 cut(s)	109
BspACI	CCGC	4 cut(s)	287, 831, 833, 1040
BspANI	GGCC	7 cut(s)	209, 400, 441, 495, 727, 836, 895
BspCNI	CTCAG	4 cut(s)	52, 94, 244, 882
BspFNI	CGCG	2 cut(s)	153, 833
BspLI	GGNNCC	4 cut(s)	354, 622, 1170, 1185
BspMAI	CTGCAG	1 cut(s)	370
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	1 cut(s)	732
BspT107I	GGYRCC	4 cut(s)	352, 620, 1168, 1183
BsrDI	GCAATG	1 cut(s)	436
BsrFI	RCCGGY	2 cut(s)	400, 955
BsrGI	TGTACA	1 cut(s)	1034
BssAI	RCCGGY	2 cut(s)	400, 955
BssECI	CCNNGG	6 cut(s)	28, 722, 831, 947, 1109, 1262
BssMI	GATC	2 cut(s)	737, 853
BssT1I	CCWWGG	3 cut(s)	28, 722, 1262
Bst2UI	CCWGG	3 cut(s)	948, 1098, 1146
Bst4CI	ACNGT	2 cut(s)	181, 1076
Bst6I	CTCTTC	2 cut(s)	323, 1286
BstAUI	TGTACA	1 cut(s)	1034
BstC8I	GCNNGC	2 cut(s)	351, 481
BstDSI	CCRYGG	1 cut(s)	831
BstF5I	GGATG	2 cut(s)	103, 1185
BstFNI	CGCG	2 cut(s)	153, 833
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	2 cut(s)	740, 856
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	2 cut(s)	737, 853
BstMWI	GCNNNNNNNGC	6 cut(s)	365, 371, 377, 386, 998, 1046
BstNI	CCWGG	3 cut(s)	948, 1098, 1146
BstNSI	RCATGY	2 cut(s)	483, 492
BstSCI	CCNGG	4 cut(s)	568, 946, 1096, 1144
BstSFI	CTRYAG	1 cut(s)	366
BstSLI	GKGCMC	2 cut(s)	507, 1273
BstUI	CGCG	2 cut(s)	153, 833
BstV1I	GCAGC	5 cut(s)	352, 358, 380, 541, 964
BstV2I	GAAGAC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	737
BstYI	RGATCY	1 cut(s)	737
BsuRI	GGCC	7 cut(s)	209, 400, 441, 495, 727, 836, 895
BtgI	CCRYGG	1 cut(s)	831
BtgZI	GCGATG	1 cut(s)	168
BtsCI	GGATG	2 cut(s)	103, 1185
BtsIMutI	CAGTG	3 cut(s)	131, 1032, 1081
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	351, 481
CaiI	CAGNNNCTG	2 cut(s)	989, 1151
CfoI	GCGC	1 cut(s)	153
Cfr10I	RCCGGY	2 cut(s)	400, 955
Cfr13I	GGNCC	1 cut(s)	439
Cfr42I	CCGCGG	1 cut(s)	834
CseI	GACGC	1 cut(s)	660
CsiI	ACCWGGT	1 cut(s)	1144
Csp6I	GTAC	6 cut(s)	522, 621, 1035, 1072, 1149, 1254
CviAII	CATG	5 cut(s)	443, 480, 489, 902, 1016
CviQI	GTAC	6 cut(s)	522, 621, 1035, 1072, 1149, 1254
DpnI	GATC	2 cut(s)	739, 855
DpnII	GATC	2 cut(s)	737, 853
DraIII	CACNNNGTG	1 cut(s)	764
EaeI	YGGCCR	2 cut(s)	207, 493
Eam1104I	CTCTTC	2 cut(s)	323, 1286
EarI	CTCTTC	2 cut(s)	323, 1286
Ecl136II	GAGCTC	1 cut(s)	187
Eco130I	CCWWGG	3 cut(s)	28, 722, 1262
Eco147I	AGGCCT	1 cut(s)	727
Eco24I	GRGCYC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	194
Eco88I	CYCGRG	1 cut(s)	450
EcoICRI	GAGCTC	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	11
EcoRII	CCWGG	3 cut(s)	946, 1096, 1144
EcoT14I	CCWWGG	3 cut(s)	28, 722, 1262
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	3 cut(s)	28, 722, 1262
FaeI	CATG	5 cut(s)	446, 483, 492, 905, 1019
FaqI	GGGAC	4 cut(s)	46, 144, 552, 658
FatI	CATG	5 cut(s)	442, 479, 488, 901, 1015
FauI	CCCGC	1 cut(s)	280
Fnu4HI	GCNGC	6 cut(s)	366, 369, 372, 530, 834, 953
FokI	GGATG	2 cut(s)	110, 1192
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	6 cut(s)	366, 369, 372, 530, 834, 953
FspBI	CTAG	8 cut(s)	360, 381, 579, 648, 690, 723, 735, 1251
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	6 cut(s)	366, 369, 372, 530, 834, 953
GsaI	CCCAGC	1 cut(s)	529
HaeIII	GGCC	7 cut(s)	209, 400, 441, 495, 727, 836, 895
HapII	CCGG	5 cut(s)	148, 401, 569, 609, 956
HgaI	GACGC	1 cut(s)	660
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	5 cut(s)	446, 483, 492, 905, 1019
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HinfI	GANTC	6 cut(s)	229, 245, 310, 321, 1005, 1022
HpaII	CCGG	5 cut(s)	148, 401, 569, 609, 956
Hpy166II	GTNNAC	4 cut(s)	828, 1226, 1271, 1304
Hpy188I	TCNGA	5 cut(s)	170, 985, 1069, 1110, 1179
Hpy188III	TCNNGA	3 cut(s)	325, 452, 1088
Hpy8I	GTNNAC	4 cut(s)	828, 1226, 1271, 1304
HpyAV	CCTTC	2 cut(s)	611, 1201
HpyCH4III	ACNGT	2 cut(s)	181, 1076
HpyCH4V	TGCA	7 cut(s)	368, 374, 389, 429, 459, 1154, 1271
HpyF10VI	GCNNNNNNNGC	6 cut(s)	365, 371, 377, 386, 998, 1046
Hsp92II	CATG	5 cut(s)	446, 483, 492, 905, 1019
HspAI	GCGC	1 cut(s)	151
KpnI	GGTACC	1 cut(s)	624
KspI	CCGCGG	1 cut(s)	834
Kzo9I	GATC	2 cut(s)	737, 853
LmnI	GCTCC	4 cut(s)	184, 291, 668, 1210
Lsp1109I	GCAGC	5 cut(s)	352, 358, 380, 541, 964
LweI	GCATC	3 cut(s)	88, 568, 784
MabI	ACCWGGT	1 cut(s)	1144
MaeI	CTAG	8 cut(s)	360, 381, 579, 648, 690, 723, 735, 1251
MalI	GATC	2 cut(s)	739, 855
MboI	GATC	2 cut(s)	737, 853
MboII	GAAGA	4 cut(s)	187, 340, 1300, 1303
MfeI	CAATTG	2 cut(s)	424, 804
MflI	RGATCY	1 cut(s)	737
MhlI	GDGCHC	3 cut(s)	189, 507, 1273
MlsI	TGGCCA	2 cut(s)	209, 495
MluCI	AATT	4 cut(s)	11, 424, 804, 1215
MluNI	TGGCCA	2 cut(s)	209, 495
MlyI	GAGTC	2 cut(s)	223, 1031
Mox20I	TGGCCA	2 cut(s)	209, 495
MroXI	GAANNNNTTC	1 cut(s)	419
MscI	TGGCCA	2 cut(s)	209, 495
MseI	TTAA	4 cut(s)	198, 716, 995, 1197
MslI	CAYNNNNRTG	1 cut(s)	861
Msp20I	TGGCCA	2 cut(s)	209, 495
MspA1I	CMGCKG	3 cut(s)	371, 833, 1040
MspI	CCGG	5 cut(s)	148, 401, 569, 609, 956
MspR9I	CCNGG	4 cut(s)	570, 948, 1098, 1146
MunI	CAATTG	2 cut(s)	424, 804
Mva1269I	GAATGC	2 cut(s)	142, 610
MvaI	CCWGG	3 cut(s)	948, 1098, 1146
MvnI	CGCG	2 cut(s)	153, 833
MwoI	GCNNNNNNNGC	6 cut(s)	365, 371, 377, 386, 998, 1046
NciI	CCSGG	1 cut(s)	570
NdeII	GATC	2 cut(s)	737, 853
NlaIII	CATG	5 cut(s)	446, 483, 492, 905, 1019
NlaIV	GGNNCC	4 cut(s)	354, 622, 1170, 1185
NspI	RCATGY	2 cut(s)	483, 492
PaeI	GCATGC	1 cut(s)	483
PaeR7I	CTCGAG	1 cut(s)	450
PaqCI	CACCTGC	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	727
PciI	ACATGT	1 cut(s)	488
PctI	GAATGC	2 cut(s)	142, 610
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	4 cut(s)	245, 310, 321, 1005
PfoI	TCCNGGA	1 cut(s)	568
PkrI	GCNGC	6 cut(s)	367, 370, 373, 531, 835, 954
PleI	GAGTC	2 cut(s)	223, 1030
PpsI	GAGTC	2 cut(s)	223, 1030
PscI	ACATGT	1 cut(s)	488
Psp124BI	GAGCTC	1 cut(s)	189
Psp6I	CCWGG	3 cut(s)	946, 1096, 1144
PspFI	CCCAGC	1 cut(s)	525
PspGI	CCWGG	3 cut(s)	946, 1096, 1144
PspN4I	GGNNCC	4 cut(s)	354, 622, 1170, 1185
PspPI	GGNCC	1 cut(s)	439
PstI	CTGCAG	1 cut(s)	370
PstNI	CAGNNNCTG	2 cut(s)	989, 1151
PsuI	RGATCY	1 cut(s)	737
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	6 cut(s)	523, 622, 1036, 1073, 1150, 1255
RsaNI	GTAC	6 cut(s)	522, 621, 1035, 1072, 1149, 1254
RseI	CAYNNNNRTG	1 cut(s)	861
SacI	GAGCTC	1 cut(s)	189
SacII	CCGCGG	1 cut(s)	834
SaqAI	TTAA	4 cut(s)	198, 716, 995, 1197
SatI	GCNGC	6 cut(s)	366, 369, 372, 530, 834, 953
Sau3AI	GATC	2 cut(s)	737, 853
Sau96I	GGNCC	1 cut(s)	439
ScaI	AGTACT	1 cut(s)	1255
SchI	GAGTC	2 cut(s)	223, 1031
ScrFI	CCNGG	4 cut(s)	570, 948, 1098, 1146
SduI	GDGCHC	3 cut(s)	189, 507, 1273
SexAI	ACCWGGT	1 cut(s)	1144
SfaNI	GCATC	3 cut(s)	88, 568, 784
SfcI	CTRYAG	1 cut(s)	366
Sfr274I	CTCGAG	1 cut(s)	450
Sfr303I	CCGCGG	1 cut(s)	834
SgrBI	CCGCGG	1 cut(s)	834
SlaI	CTCGAG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	861
SmlI	CTYRAG	5 cut(s)	67, 450, 511, 773, 1229
SmoI	CTYRAG	5 cut(s)	67, 450, 511, 773, 1229
SphI	GCATGC	1 cut(s)	483
Sse9I	AATT	4 cut(s)	11, 424, 804, 1215
SseBI	AGGCCT	1 cut(s)	727
SsiI	CCGC	4 cut(s)	287, 831, 833, 1040
SspMI	CTAG	8 cut(s)	360, 381, 579, 648, 690, 723, 735, 1251
SstI	GAGCTC	1 cut(s)	189
StuI	AGGCCT	1 cut(s)	727
StyD4I	CCNGG	4 cut(s)	568, 946, 1096, 1144
StyI	CCWWGG	3 cut(s)	28, 722, 1262
TaaI	ACNGT	2 cut(s)	181, 1076
TaqI	TCGA	2 cut(s)	313, 451
TasI	AATT	4 cut(s)	11, 424, 804, 1215
TatI	WGTACW	3 cut(s)	1034, 1071, 1253
TauI	GCSGC	1 cut(s)	836
TfiI	GAWTC	4 cut(s)	245, 310, 321, 1005
Tru1I	TTAA	4 cut(s)	198, 716, 995, 1197
Tru9I	TTAA	4 cut(s)	198, 716, 995, 1197
TscAI	CASTG	3 cut(s)	131, 1032, 1081
TseI	GCWGC	5 cut(s)	365, 368, 371, 529, 952
TspDTI	ATGAA	6 cut(s)	4, 69, 131, 673, 929, 1231
TspRI	CASTG	3 cut(s)	131, 1032, 1081
VneI	GTGCAC	1 cut(s)	1269
XapI	RAATTY	1 cut(s)	11
XceI	RCATGY	2 cut(s)	483, 492
XhoI	CTCGAG	1 cut(s)	450
XmaJI	CCTAGG	1 cut(s)	722
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	8 cut(s)	360, 381, 579, 648, 690, 723, 735, 1251
ZrmI	AGTACT	1 cut(s)	1255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.