FvH4_4g10021

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Reverse (-)
12497132 .. 12497764
633 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10021.t1

Sequence Viewer

Length: 543 bp
ATGGATTTTGTTTTTAGTTTACCTCATACCCGTGAAGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAATCTGCACATTTCTTGCCAGTGGGAAAAAAGTATAAATTGGATACATTGGCGGAGCTTTATGTGAATGAAATTGTGAGGCTTCATGGTGTTCCTGAATCAATAGTGTCAGATCGGGATCCTCGATTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGTTCAGAGGGAGTTGGGATAAAAACCTATCTTTGATGGAATTTGCCTATAATAATAGCTATCATTCTAGCATTGAGTTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAAGACTGCTCAAAGTAGGCAGAAGAGTTATGCGGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

181

Amino Acids

20.74

Weight (kDa)

7.91

Isoelectric Point (pI)

27.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 242
AciI CCGC 2 cut(s) 128, 500
AclWI GGATC 2 cut(s) 188, 201
AcsI RAATTY 3 cut(s) 212, 383, 524
AcuI CTGAAG 2 cut(s) 212, 241
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 1 cut(s) 36
AgsI TTSAA 2 cut(s) 524, 530
AluBI AGCT 4 cut(s) 133, 224, 236, 402
AluI AGCT 4 cut(s) 133, 224, 236, 402
Alw21I GWGCWC 1 cut(s) 226
AlwI GGATC 2 cut(s) 188, 201
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 3 cut(s) 212, 383, 524
Asp718I GGTACC 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 64, 67
BamHI GGATCC 1 cut(s) 193
BanI GGYRCC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 226
BbvI GCAGC 1 cut(s) 245
BccI CCATC 2 cut(s) 278, 373
BciVI GTATCC 1 cut(s) 112
BfaI CTAG 1 cut(s) 411
BfuI GTATCC 1 cut(s) 112
BglII AGATCT 1 cut(s) 517
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
BmiI GGNNCC 2 cut(s) 195, 244
BplI GAGNNNNNCTC 2 cut(s) 450, 482
BpuEI CTTGAG 1 cut(s) 452
BsaBI GATNNNNATC 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 95
Bse8I GATNNNNATC 1 cut(s) 192
BseGI GGATG 2 cut(s) 271, 508
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 245
BsgI GTGCAG 1 cut(s) 66
BshNI GGYRCC 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 3 cut(s) 187, 193, 517
BspACI CCGC 2 cut(s) 128, 500
BspCNI CTCAG 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 195, 244
BspPI GGATC 2 cut(s) 188, 201
BspQI GCTCTTC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 95
BssMI GATC 3 cut(s) 187, 193, 517
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 3 cut(s) 231, 260, 485
BstDEI CTNAG 1 cut(s) 276
BstF5I GGATG 2 cut(s) 271, 508
BstKTI GATC 3 cut(s) 190, 196, 520
BstMBI GATC 3 cut(s) 187, 193, 517
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 245
BstX2I RGATCY 2 cut(s) 193, 517
BstYI RGATCY 2 cut(s) 193, 517
BsuI GTATCC 1 cut(s) 112
BtsCI GGATG 2 cut(s) 271, 508
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 2 cut(s) 102, 261
Csp6I GTAC 1 cut(s) 243
CviAII CATG 4 cut(s) 41, 161, 340, 428
CviJI RGCY 6 cut(s) 133, 157, 224, 236, 332, 402
CviKI_1 RGCY 6 cut(s) 133, 157, 224, 236, 332, 402
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 1 cut(s) 276
DpnI GATC 3 cut(s) 189, 195, 519
DpnII GATC 3 cut(s) 187, 193, 517
Eam1104I CTCTTC 3 cut(s) 231, 260, 485
EarI CTCTTC 3 cut(s) 231, 260, 485
EciI GGCGGA 1 cut(s) 143
Ecl136II GAGCTC 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 224
Eco57I CTGAAG 2 cut(s) 212, 241
EcoICRI GAGCTC 1 cut(s) 224
EcoT38I GRGCYC 1 cut(s) 226
FaeI CATG 4 cut(s) 44, 164, 343, 431
FatI CATG 4 cut(s) 40, 160, 339, 427
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 2 cut(s) 258, 515
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 411
GluI GCNGC 1 cut(s) 234
Hin1II CATG 4 cut(s) 44, 164, 343, 431
HinfI GANTC 3 cut(s) 69, 173, 465
HphI GGTGA 2 cut(s) 64, 67
Hpy166II GTNNAC 1 cut(s) 20
Hpy188I TCNGA 5 cut(s) 187, 279, 295, 309, 350
Hpy188III TCNNGA 4 cut(s) 170, 191, 469, 521
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4V TGCA 2 cut(s) 83, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 4 cut(s) 44, 164, 343, 431
KpnI GGTACC 1 cut(s) 246
Kzo9I GATC 3 cut(s) 187, 193, 517
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 2 cut(s) 130, 221
LpnPI CCDG 4 cut(s) 108, 183, 202, 215
Lsp1109I GCAGC 1 cut(s) 245
MaeI CTAG 1 cut(s) 411
MaeIII GTNAC 1 cut(s) 430
MalI GATC 3 cut(s) 189, 195, 519
MboI GATC 3 cut(s) 187, 193, 517
MboII GAAGA 4 cut(s) 218, 247, 454, 502
MflI RGATCY 2 cut(s) 193, 517
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 6 cut(s) 113, 147, 212, 248, 383, 524
MlyI GAGTC 2 cut(s) 63, 459
MnlI CCTC 8 cut(s) 33, 147, 207, 285, 291, 310, 321, 344
MseI TTAA 2 cut(s) 422, 447
MslI CAYNNNNRTG 1 cut(s) 30
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 3 cut(s) 187, 193, 517
NlaIII CATG 4 cut(s) 44, 164, 343, 431
NlaIV GGNNCC 2 cut(s) 195, 244
PciSI GCTCTTC 1 cut(s) 231
PcsI WCGNNNNNNNCGW 1 cut(s) 196
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 2 cut(s) 63, 459
PpsI GAGTC 2 cut(s) 63, 459
Psp124BI GAGCTC 1 cut(s) 226
PspN4I GGNNCC 2 cut(s) 195, 244
PsuI RGATCY 2 cut(s) 193, 517
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 30
SacI GAGCTC 1 cut(s) 226
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 2 cut(s) 422, 447
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 3 cut(s) 187, 193, 517
SchI GAGTC 2 cut(s) 63, 459
SduI GDGCHC 1 cut(s) 226
SetI ASST 7 cut(s) 25, 135, 226, 238, 244, 372, 404
SmiMI CAYNNNNRTG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
Sse9I AATT 6 cut(s) 113, 147, 212, 248, 383, 524
SsiI CCGC 2 cut(s) 128, 500
SspMI CTAG 1 cut(s) 411
SstI GAGCTC 1 cut(s) 226
TaaI ACNGT 1 cut(s) 47
TaqI TCGA 1 cut(s) 199
TasI AATT 6 cut(s) 113, 147, 212, 248, 383, 524
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 422, 447
Tru9I TTAA 2 cut(s) 422, 447
TscAI CASTG 2 cut(s) 102, 268
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 3 cut(s) 149, 159, 260
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 2 cut(s) 102, 268
XapI RAATTY 3 cut(s) 212, 383, 524
XspI CTAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.