FvH4_4g09243

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Reverse (-)
10772549 .. 10776457
3909 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g09243.t1

Sequence Viewer

Length: 3909 bp
ATGGATCGAGCTCCACAACCTCATACAGTGAAGAGGAGAGAAGTTTATGAGGCTGGAGCAAGAGAGTTCAAGGGTGTCAAGGGACCCCTTGATGCTTATACTTGGGTGGACAAAATGGAAAAGGCTTTTGCGAGCTCAGAGTTGCCAGAAGAAAGGAAGGTGAAGATGGCAGTAACTTTCCTGGATGATTCAGCACATCACTGGTGGTCGCTTGCCAGCAGGAATGTTGAGGATGCGCTGAATATGTCGTGGGAGCAGTTTAAGACTCTCTTCTTGGGGCAATATTTCAGTCCTGCCCACCGTAGCAGAATTCAGTCGGATTTCCTGAATATGAAGAAGAGGGATGATGAGGGTGTTATAGAGTTTCAGGAGAGATTCACTTCCCTGAGCTATCATGTGTCATATCTGGTTCCTGATGAGAGGACCAGGATGGAGATGTTTATTGGGGCTCTTGGTGGAGTGTTTGCAGATAAGATGACGGGTGTTTATTACCCGACTTTCTCTGACGCTGTTCATGCAGCCATGGCCATTGAGTCTATGGGGATTTATAGTGCTCGGCCACGAGATTTCGGTGGTCCCAGTCAGGGTCCATCCAAGAAAGCTGCTTCATCATCCGCTTCAGGTTCATCAGCTGGTAGTGGCAGTAGTGGGGGATCAGGTTCTCATTCTCGGTTCAGGGTTAGAGGACGTCACAGGAGACCTGCTAGGAGCCAGTTGGGTAGGCAGCAGTCTGGGCAGTATGGTTCGGGTGGCAGTTTCCATGGTGGGACATCTGGTAGCCAGACTTTTTCTTATGGGCAGCAGCAGCAGTTTTCTGGGTGCTTTGAGTGTGGTAGTCAGGACCACTTCAGGAGGGATTGCCCATTGTTGGCTCAGAGGACCACTCCCACCCCTACTCAGCCTATTGGTCAGTCTTCAGCTGGAGGCTCTAGTAGTGGTGCCCAGGGCAGTGTTTTGGTCAGAGGTGGCTCTCAGCGGGGAAGTGGTCAGCGTGGACGTCCCATGACTTGCGCTAGACTGCATGCTATGACCCAGCAAGAGGGTCGTACTTCTCCAGATGTTATCATTGGTACGTTATTGATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTCGATTCGCCCTTCATGCCAATGTGCCATCATCGTCTCTTCCAGGCGAGTGGCATGTGTCTCTACCCTCTGGTGAGGTGATGAGAATAAATTGGGTATTTAGTGGCTGTGAAGTGGTAGTGGAAGGAGTTAATTTCGAGGCTGATTTAATTCCTTTAGATATAGTGGAGTTTGATGTGATCTTGGGAATGGACTTTTTGGAAGCATATAGAGCTATGGTAGATTGTTTTCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTTTGAGGTTGCTTTCCAAGGGGAAAGAGATGTTATTTTTAGTTGCATAATTTCCGCTGTTGCTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTTTAGCTCATGTGGTGGATACAAGTATGGGAGTTGTGGGATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTCGCCTCCTGCAAGGGAGATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCTATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAATTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCCGGTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGGAAGTTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGCTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTATCATCAGTTGCGGATCCGAGAGGGGGACATAGCCAAGACTGCTTTTCGGTCACGATATGGTCATTATGAATTTGTGGTGATGCCTTTTGGACTTACTAATGCACCCGCGGTGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATATCTTGATCGTTTCGTGATCGTATTCATAGATGATATCTTGGTTTACTCAAGAAGTGAGAAGGAGCATGCCAAGCATTTAAGAATAATATTGCGGACTTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTTGATAAAGTGGGGTTCTTGGGTCATGTGATTTCGGCAGAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACAGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTTCTGCTCCTCTCACAAAGTTGACCAGGAAGGGGGTTAAGTTTGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGTTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAACATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCAGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAAAGAGAGCTTAATATGAGACAGAGAAGATGGATGGAATTAATCAGTGATTATGATTGCACTATCGAGTATCATCCTGGAAAAGCTAATGTAGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATATGTCAGTGGATGAGGTTGGTGCTTTGATAGCCAGTTTTTATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATCCTTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGGGACTCTGTTGTTTAAAAATCGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCATAGCTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCAAGGCTGAAAGGCAGAAGCCTTCTGGGTTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGCTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTGGATAAATTGGCGGAGGTCTATGTGAATGAAATTGTGAGGCTTCACGGTGTTCCTGAATCAATAGTGTCAGATCGGGACCCTCGATTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGTTCAGAGGTAGTTGGGATAAAAACCTATCTTTGATGGAATTTGCCTATAATAATAGCTATCATTCTAGCATTGGTATGGCGCCTTTTGAGGCTCTTTATGGGAGGCAGTGTCGCACGCCTTTGTGTTGGAATGAAGTAGGGGAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

1303

Amino Acids

146.52

Weight (kDa)

8.81

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 55 - 150 1.2e-14 Retrotransposon gag protein
RVP_2 PF08284 336 - 465 6.2e-33 Retroviral aspartyl protease
RVT_1 PF00078 596 - 756 5.7e-36 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 819 - 913 3.7e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 845 - 943 1e-32 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 1058 - 1115 3.6e-20 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 691, 1000
Acc36I ACCTGC 2 cut(s) 709, 2360
Acc65I GGTACC 1 cut(s) 3656
AccB1I GGYRCC 6 cut(s) 938, 1669, 1802, 1904, 3656, 3838
AccB7I CCANNNNNTGG 1 cut(s) 2302
AccII CGCG 1 cut(s) 2051
AccIII TCCGGA 2 cut(s) 1573, 2527
AcoI YGGCCR 3 cut(s) 525, 557, 3278
AcsI RAATTY 4 cut(s) 309, 2012, 3626, 3797
AcuI CTGAAG 5 cut(s) 603, 832, 900, 3626, 3655
AcyI GRCGYC 4 cut(s) 688, 997, 1670, 3839
AfaI GTAC 4 cut(s) 1048, 1072, 3442, 3658
AfiI CCNNNNNNNGG 8 cut(s) 584, 868, 1039, 1966, 2302, 2439, 2645, 3450
AjiI CACGTC 1 cut(s) 2573
AjnI CCWGG 7 cut(s) 180, 425, 942, 1183, 1597, 2432, 2851
AjuI GAANNNNNNNTTGG 2 cut(s) 3512, 3544
AleI CACNNNNGTG 1 cut(s) 2336
Alw21I GWGCWC 6 cut(s) 13, 137, 556, 1774, 2512, 3640
Alw26I GTCTC 7 cut(s) 691, 1182, 1206, 1764, 1804, 2701, 2788
Aor13HI TCCGGA 2 cut(s) 1573, 2527
AoxI GGCC 5 cut(s) 525, 557, 1748, 3014, 3278
ApoI RAATTY 4 cut(s) 309, 2012, 3626, 3797
ArsI GACNNNNNNTTYG 2 cut(s) 3599, 3631
AseI ATTAAT 1 cut(s) 2816
Asp700I GAANNNNTTC 2 cut(s) 1551, 1641
Asp718I GGTACC 1 cut(s) 3656
AspLEI GCGC 5 cut(s) 238, 1013, 1672, 2385, 3841
AspS9I GGNCC 8 cut(s) 83, 423, 575, 587, 841, 879, 3403, 3607
AsuC2I CCSGG 3 cut(s) 1116, 1647, 3234
AsuHPI GGTGA 7 cut(s) 172, 1226, 1231, 2032, 3403, 3478, 3481
AsuII TTCGAA 2 cut(s) 1390, 3089
AvaII GGWCC 8 cut(s) 83, 423, 575, 587, 841, 879, 3403, 3607
AxyI CCTNAGG 1 cut(s) 1587
BaeGI GKGCMC 1 cut(s) 943
BalI TGGCCA 2 cut(s) 527, 3280
BamHI GGATCC 2 cut(s) 1956, 2290
BanI GGYRCC 6 cut(s) 938, 1669, 1802, 1904, 3656, 3838
BanII GRGCYC 4 cut(s) 13, 137, 451, 3640
BarI GAAGNNNNNNTAC 2 cut(s) 1371, 1403
BauI CACGAG 1 cut(s) 561
BbsI GAAGAC 4 cut(s) 906, 1715, 2332, 2750
Bbv12I GWGCWC 6 cut(s) 13, 137, 556, 1774, 2512, 3640
BbvCI CCTCAGC 1 cut(s) 1898
BceAI ACGGC 1 cut(s) 3361
BcgI CGANNNNNNTGC 4 cut(s) 1025, 1059, 2585, 2619
BciT130I CCWGG 7 cut(s) 182, 427, 944, 1185, 1599, 2434, 2853
BciVI GTATCC 1 cut(s) 1513
BclI TGATCA 1 cut(s) 1891
BcnI CCSGG 3 cut(s) 1116, 1647, 3234
BcoDI GTCTC 7 cut(s) 691, 1182, 1206, 1764, 1804, 2701, 2788
BfaI CTAG 9 cut(s) 705, 930, 1014, 1140, 1752, 2568, 2579, 2625, 3825
BfmI CTRYAG 3 cut(s) 1557, 1632, 2955
BfoI RGCGCY 3 cut(s) 1673, 2386, 3842
BfuAI ACCTGC 2 cut(s) 709, 2360
BfuI GTATCC 1 cut(s) 1513
Bme18I GGWCC 8 cut(s) 83, 423, 575, 587, 841, 879, 3403, 3607
BmgBI CACGTC 1 cut(s) 2573
BmgT120I GGNCC 8 cut(s) 83, 423, 575, 587, 841, 879, 3403, 3607
BmrI ACTGGG 1 cut(s) 573
BmsI GCATC 6 cut(s) 82, 223, 2013, 2551, 2583, 2866
BmuI ACTGGG 1 cut(s) 573
BpiI GAAGAC 4 cut(s) 906, 1715, 2332, 2750
BplI GAGNNNNNCTC 2 cut(s) 868, 900
BpmI CTGGAG 5 cut(s) 75, 942, 1038, 1671, 2690
Bpu10I CCTNAGC 2 cut(s) 386, 1898
Bpu14I TTCGAA 2 cut(s) 1390, 3089
BpuEI CTTGAG 3 cut(s) 2122, 2681, 3392
BpuMI CCSGG 3 cut(s) 1116, 1647, 3234
Bsa29I ATCGAT 1 cut(s) 1878
BsaHI GRCGYC 4 cut(s) 688, 997, 1670, 3839
BsaI GGTCTC 1 cut(s) 691
BsaJI CCNNGG 9 cut(s) 522, 760, 942, 943, 1420, 1763, 1871, 2049, 3414
BsaWI WCCGGW 3 cut(s) 1573, 1774, 2527
Bsc4I CCNNNNNNNGG 8 cut(s) 584, 868, 1039, 1966, 2302, 2439, 2645, 3450
Bse1I ACTGG 7 cut(s) 206, 579, 712, 3000, 3017, 3389, 3509
Bse21I CCTNAGG 1 cut(s) 1587
BseAI TCCGGA 2 cut(s) 1573, 2527
BseBI CCWGG 7 cut(s) 182, 427, 944, 1185, 1599, 2434, 2853
BseCI ATCGAT 1 cut(s) 1878
BseDI CCNNGG 9 cut(s) 522, 760, 942, 943, 1420, 1763, 1871, 2049, 3414
BseLI CCNNNNNNNGG 8 cut(s) 584, 868, 1039, 1966, 2302, 2439, 2645, 3450
BseMII CTCAG 9 cut(s) 150, 377, 887, 911, 986, 1578, 1679, 1889, 3704
BseNI ACTGG 7 cut(s) 206, 579, 712, 3000, 3017, 3389, 3509
BseRI GAGGAG 3 cut(s) 49, 1604, 2406
BseSI GKGCMC 1 cut(s) 943
BseYI CCCAGC 1 cut(s) 1032
BsgI GTGCAG 1 cut(s) 3480
Bsh1236I CGCG 1 cut(s) 2051
BshFI GGCC 5 cut(s) 527, 559, 1750, 3016, 3280
BshNI GGYRCC 6 cut(s) 938, 1669, 1802, 1904, 3656, 3838
BshVI ATCGAT 1 cut(s) 1878
BsiHKAI GWGCWC 6 cut(s) 13, 137, 556, 1774, 2512, 3640
BsiSI CCGG 6 cut(s) 1116, 1574, 1647, 1775, 2528, 3233
BslFI GGGAC 8 cut(s) 96, 561, 781, 984, 1982, 3145, 3416, 3620
BslI CCNNNNNNNGG 8 cut(s) 584, 868, 1039, 1966, 2302, 2439, 2645, 3450
BsmAI GTCTC 7 cut(s) 691, 1182, 1206, 1764, 1804, 2701, 2788
BsmBI CGTCTC 1 cut(s) 1182
BsmFI GGGAC 8 cut(s) 96, 561, 781, 984, 1982, 3145, 3416, 3620
BsmI GAATGC 1 cut(s) 1126
BsnI GGCC 5 cut(s) 527, 559, 1750, 3016, 3280
Bso31I GGTCTC 1 cut(s) 691
Bsp119I TTCGAA 2 cut(s) 1390, 3089
Bsp1286I GDGCHC 8 cut(s) 13, 137, 451, 556, 943, 1774, 2512, 3640
Bsp13I TCCGGA 2 cut(s) 1573, 2527
Bsp19I CCATGG 4 cut(s) 522, 760, 1763, 3414
BspANI GGCC 5 cut(s) 527, 559, 1750, 3016, 3280
BspCNI CTCAG 9 cut(s) 149, 378, 886, 910, 985, 1579, 1678, 1890, 3703
BspDI ATCGAT 1 cut(s) 1878
BspEI TCCGGA 2 cut(s) 1573, 2527
BspFNI CGCG 1 cut(s) 2051
BspHI TCATGA 2 cut(s) 2067, 2662
BspMI ACCTGC 2 cut(s) 709, 2360
BspQI GCTCTTC 1 cut(s) 3645
BspT104I TTCGAA 2 cut(s) 1390, 3089
BspT107I GGYRCC 6 cut(s) 938, 1669, 1802, 1904, 3656, 3838
BspTNI GGTCTC 1 cut(s) 691
BsrI ACTGG 7 cut(s) 206, 579, 712, 3000, 3017, 3389, 3509
BssECI CCNNGG 9 cut(s) 522, 760, 942, 943, 1420, 1763, 1871, 2049, 3414
BssNI GRCGYC 4 cut(s) 688, 997, 1670, 3839
BssSI CACGAG 1 cut(s) 561
BssT1I CCWWGG 5 cut(s) 522, 760, 1420, 1763, 3414
Bst2BI CACGAG 1 cut(s) 561
Bst2UI CCWGG 7 cut(s) 182, 427, 944, 1185, 1599, 2434, 2853
Bst4CI ACNGT 7 cut(s) 28, 302, 1849, 2338, 3048, 3461, 3578
BstACI GRCGYC 4 cut(s) 688, 997, 1670, 3839
BstAPI GCANNNNNTGC 1 cut(s) 3224
BstBI TTCGAA 2 cut(s) 1390, 3089
BstDSI CCRYGG 5 cut(s) 522, 760, 1763, 2049, 3414
BstFNI CGCG 1 cut(s) 2051
BstH2I RGCGCY 3 cut(s) 1673, 2386, 3842
BstHHI GCGC 5 cut(s) 238, 1013, 1672, 2385, 3841
BstMAI GTCTC 7 cut(s) 691, 1182, 1206, 1764, 1804, 2701, 2788
BstNI CCWGG 7 cut(s) 182, 427, 944, 1185, 1599, 2434, 2853
BstNSI RCATGY 4 cut(s) 1025, 1199, 1759, 2159
BstSFI CTRYAG 3 cut(s) 1557, 1632, 2955
BstSLI GKGCMC 1 cut(s) 943
BstUI CGCG 1 cut(s) 2051
BstV2I GAAGAC 4 cut(s) 906, 1715, 2332, 2750
BstX2I RGATCY 3 cut(s) 1956, 2062, 2290
BstXI CCANNNNNNTGG 1 cut(s) 1191
BstYI RGATCY 3 cut(s) 1956, 2062, 2290
Bsu15I ATCGAT 1 cut(s) 1878
Bsu36I CCTNAGG 1 cut(s) 1587
BsuI GTATCC 1 cut(s) 1513
BsuRI GGCC 5 cut(s) 527, 559, 1750, 3016, 3280
BsuTUI ATCGAT 1 cut(s) 1878
BtgI CCRYGG 5 cut(s) 522, 760, 1763, 2049, 3414
BtrI CACGTC 1 cut(s) 2573
BtsI GCAGTG 4 cut(s) 955, 2316, 3675, 3872
BveI ACCTGC 2 cut(s) 709, 2360
CciI TCATGA 2 cut(s) 2067, 2662
CfoI GCGC 5 cut(s) 238, 1013, 1672, 2385, 3841
Cfr13I GGNCC 8 cut(s) 83, 423, 575, 587, 841, 879, 3403, 3607
Cfr42I CCGCGG 1 cut(s) 2052
ClaI ATCGAT 1 cut(s) 1878
CseI GACGC 1 cut(s) 515
Csp6I GTAC 4 cut(s) 1047, 1071, 3441, 3657
CviQI GTAC 4 cut(s) 1047, 1071, 3441, 3657
DinI GGCGCC 2 cut(s) 1671, 3840
DraI TTTAAA 1 cut(s) 3145
EaeI YGGCCR 3 cut(s) 525, 557, 3278
EciI GGCGGA 1 cut(s) 3557
Ecl136II GAGCTC 3 cut(s) 11, 135, 3638
Eco130I CCWWGG 5 cut(s) 522, 760, 1420, 1763, 3414
Eco24I GRGCYC 4 cut(s) 13, 137, 451, 3640
Eco31I GGTCTC 1 cut(s) 691
Eco32I GATATC 1 cut(s) 2125
Eco47I GGWCC 8 cut(s) 83, 423, 575, 587, 841, 879, 3403, 3607
Eco53kI GAGCTC 3 cut(s) 11, 135, 3638
Eco57I CTGAAG 5 cut(s) 603, 832, 900, 3626, 3655
Eco81I CCTNAGG 1 cut(s) 1587
EcoICRI GAGCTC 3 cut(s) 11, 135, 3638
EcoO109I RGGNCCY 2 cut(s) 83, 3607
EcoRI GAATTC 1 cut(s) 309
EcoRII CCWGG 7 cut(s) 180, 425, 942, 1183, 1597, 2432, 2851
EcoRV GATATC 1 cut(s) 2125
EcoT14I CCWWGG 5 cut(s) 522, 760, 1420, 1763, 3414
EcoT22I ATGCAT 1 cut(s) 1820
EcoT38I GRGCYC 4 cut(s) 13, 137, 451, 3640
EgeI GGCGCC 2 cut(s) 1671, 3840
EheI GGCGCC 2 cut(s) 1671, 3840
ErhI CCWWGG 5 cut(s) 522, 760, 1420, 1763, 3414
Esp3I CGTCTC 1 cut(s) 1182
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 8 cut(s) 96, 561, 781, 984, 1982, 3145, 3416, 3620
FauI CCCGC 3 cut(s) 969, 2056, 3030
FauNDI CATATG 1 cut(s) 3220
FbaI TGATCA 1 cut(s) 1891
FriOI GRGCYC 4 cut(s) 13, 137, 451, 3640
FspBI CTAG 9 cut(s) 705, 930, 1014, 1140, 1752, 2568, 2579, 2625, 3825
GlaI GCGC 5 cut(s) 237, 1012, 1671, 2384, 3840
GsaI CCCAGC 1 cut(s) 1036
GsuI CTGGAG 5 cut(s) 75, 942, 1038, 1671, 2690
HaeII RGCGCY 3 cut(s) 1673, 2386, 3842
HaeIII GGCC 5 cut(s) 527, 559, 1750, 3016, 3280
HapII CCGG 6 cut(s) 1116, 1574, 1647, 1775, 2528, 3233
HgaI GACGC 1 cut(s) 515
HhaI GCGC 5 cut(s) 238, 1013, 1672, 2385, 3841
Hin1I GRCGYC 4 cut(s) 688, 997, 1670, 3839
Hin6I GCGC 5 cut(s) 236, 1011, 1670, 2383, 3839
HinP1I GCGC 5 cut(s) 236, 1011, 1670, 2383, 3839
HincII GTYRAC 1 cut(s) 2430
HindII GTYRAC 1 cut(s) 2430
HpaII CCGG 6 cut(s) 1116, 1574, 1647, 1775, 2528, 3233
HphI GGTGA 7 cut(s) 172, 1226, 1231, 2032, 3403, 3478, 3481
Hpy166II GTNNAC 5 cut(s) 109, 995, 2134, 2430, 2772
Hpy8I GTNNAC 5 cut(s) 109, 995, 2134, 2430, 2772
HpyAV CCTTC 9 cut(s) 151, 1163, 1259, 2143, 2270, 2431, 3069, 3256, 3369
HpyCH4III ACNGT 7 cut(s) 28, 302, 1849, 2338, 3048, 3461, 3578
HpyCH4IV ACGT 4 cut(s) 688, 997, 1073, 2572
HpySE526I ACGT 4 cut(s) 688, 997, 1073, 2572
Hsp92I GRCGYC 4 cut(s) 688, 997, 1670, 3839
HspAI GCGC 5 cut(s) 236, 1011, 1670, 2383, 3839
KasI GGCGCC 2 cut(s) 1669, 3838
KflI GGGWCCC 2 cut(s) 83, 3607
Kpn2I TCCGGA 2 cut(s) 1573, 2527
KpnI GGTACC 1 cut(s) 3660
Ksp22I TGATCA 1 cut(s) 1891
KspI CCGCGG 1 cut(s) 2052
LguI GCTCTTC 1 cut(s) 3645
LweI GCATC 6 cut(s) 82, 223, 2013, 2551, 2583, 2866
MaeI CTAG 9 cut(s) 705, 930, 1014, 1140, 1752, 2568, 2579, 2625, 3825
MaeII ACGT 4 cut(s) 688, 997, 1073, 2572
MaeIII GTNAC 5 cut(s) 172, 689, 1843, 1992, 2338
MfeI CAATTG 2 cut(s) 1715, 2630
MflI RGATCY 3 cut(s) 1956, 2062, 2290
MhlI GDGCHC 8 cut(s) 13, 137, 451, 556, 943, 1774, 2512, 3640
MlsI TGGCCA 2 cut(s) 527, 3280
MluNI TGGCCA 2 cut(s) 527, 3280
Mly113I GGCGCC 2 cut(s) 1670, 3839
MlyI GAGTC 6 cut(s) 259, 542, 1705, 2764, 3127, 3477
MmeI TCCRAC 2 cut(s) 297, 3866
Mox20I TGGCCA 2 cut(s) 527, 3280
Mph1103I ATGCAT 1 cut(s) 1820
MroI TCCGGA 2 cut(s) 1573, 2527
MroXI GAANNNNTTC 2 cut(s) 1551, 1641
MscI TGGCCA 2 cut(s) 527, 3280
MslI CAYNNNNRTG 5 cut(s) 1161, 2336, 3245, 3413, 3833
Msp20I TGGCCA 2 cut(s) 527, 3280
MspA1I CMGCKG 7 cut(s) 632, 920, 976, 1460, 1691, 1897, 2051
MspI CCGG 6 cut(s) 1116, 1574, 1647, 1775, 2528, 3233
MunI CAATTG 2 cut(s) 1715, 2630
Mva1269I GAATGC 1 cut(s) 1126
MvaI CCWGG 7 cut(s) 182, 427, 944, 1185, 1599, 2434, 2853
MvnI CGCG 1 cut(s) 2051
NarI GGCGCC 2 cut(s) 1670, 3839
NciI CCSGG 3 cut(s) 1116, 1647, 3234
NcoI CCATGG 4 cut(s) 522, 760, 1763, 3414
NdeI CATATG 1 cut(s) 3220
NmeAIII GCCGAG 1 cut(s) 535
NmuCI GTSAC 4 cut(s) 689, 1843, 1992, 2338
NsiI ATGCAT 1 cut(s) 1820
NspI RCATGY 4 cut(s) 1025, 1199, 1759, 2159
NspV TTCGAA 2 cut(s) 1390, 3089
OliI CACNNNNGTG 1 cut(s) 2336
PaeI GCATGC 2 cut(s) 1025, 2159
PagI TCATGA 2 cut(s) 2067, 2662
PasI CCCWGGG 1 cut(s) 943
PciSI GCTCTTC 1 cut(s) 3645
PcsI WCGNNNNNNNCGW 1 cut(s) 3610
PctI GAATGC 1 cut(s) 1126
PdmI GAANNNNTTC 2 cut(s) 1551, 1641
PfeI GAWTC 6 cut(s) 188, 375, 1146, 1837, 2347, 3587
PflFI GACNNNGTC 1 cut(s) 2574
PflMI CCANNNNNTGG 1 cut(s) 2302
PfoI TCCNGGA 4 cut(s) 180, 1114, 1645, 2851
PleI GAGTC 6 cut(s) 259, 541, 1705, 2763, 3127, 3477
PluTI GGCGCC 2 cut(s) 1673, 3842
PpsI GAGTC 6 cut(s) 259, 541, 1705, 2763, 3127, 3477
PpuMI RGGWCCY 2 cut(s) 83, 3607
PshBI ATTAAT 1 cut(s) 2816
Psp124BI GAGCTC 3 cut(s) 13, 137, 3640
Psp5II RGGWCCY 2 cut(s) 83, 3607
Psp6I CCWGG 7 cut(s) 180, 425, 942, 1183, 1597, 2432, 2851
PspFI CCCAGC 1 cut(s) 1032
PspGI CCWGG 7 cut(s) 180, 425, 942, 1183, 1597, 2432, 2851
PspPI GGNCC 8 cut(s) 83, 423, 575, 587, 841, 879, 3403, 3607
PspPPI RGGWCCY 2 cut(s) 83, 3607
PsuI RGATCY 3 cut(s) 1956, 2062, 2290
PsyI GACNNNGTC 1 cut(s) 2574
PvuII CAGCTG 3 cut(s) 632, 920, 1897
RsaI GTAC 4 cut(s) 1048, 1072, 3442, 3658
RsaNI GTAC 4 cut(s) 1047, 1071, 3441, 3657
RseI CAYNNNNRTG 5 cut(s) 1161, 2336, 3245, 3413, 3833
SacI GAGCTC 3 cut(s) 13, 137, 3640
SacII CCGCGG 1 cut(s) 2052
SapI GCTCTTC 1 cut(s) 3645
Sau96I GGNCC 8 cut(s) 83, 423, 575, 587, 841, 879, 3403, 3607
SchI GAGTC 6 cut(s) 259, 542, 1705, 2764, 3127, 3477
SduI GDGCHC 8 cut(s) 13, 137, 451, 556, 943, 1774, 2512, 3640
SfaNI GCATC 6 cut(s) 82, 223, 2013, 2551, 2583, 2866
SfcI CTRYAG 3 cut(s) 1557, 1632, 2955
SfoI GGCGCC 2 cut(s) 1671, 3840
Sfr303I CCGCGG 1 cut(s) 2052
SfuI TTCGAA 2 cut(s) 1390, 3089
SgrBI CCGCGG 1 cut(s) 2052
SinI GGWCC 8 cut(s) 83, 423, 575, 587, 841, 879, 3403, 3607
SmiMI CAYNNNNRTG 5 cut(s) 1161, 2336, 3245, 3413, 3833
SmlI CTYRAG 3 cut(s) 2137, 2696, 3371
SmoI CTYRAG 3 cut(s) 2137, 2696, 3371
SphI GCATGC 2 cut(s) 1025, 2159
SspDI GGCGCC 2 cut(s) 1669, 3838
SspI AATATT 2 cut(s) 284, 2178
SspMI CTAG 9 cut(s) 705, 930, 1014, 1140, 1752, 2568, 2579, 2625, 3825
SstI GAGCTC 3 cut(s) 13, 137, 3640
StyI CCWWGG 5 cut(s) 522, 760, 1420, 1763, 3414
TaaI ACNGT 7 cut(s) 28, 302, 1849, 2338, 3048, 3461, 3578
TaiI ACGT 4 cut(s) 691, 1000, 1076, 2575
TaqII GACCGA 1 cut(s) 1980
TauI GCSGC 2 cut(s) 2641, 3101
TfiI GAWTC 6 cut(s) 188, 375, 1146, 1837, 2347, 3587
TseFI GTSAC 4 cut(s) 689, 1843, 1992, 2338
Tsp45I GTSAC 4 cut(s) 689, 1843, 1992, 2338
TspGWI ACGGA 1 cut(s) 1854
Tth111I GACNNNGTC 1 cut(s) 2574
Van91I CCANNNNNTGG 1 cut(s) 2302
VpaK11BI GGWCC 8 cut(s) 83, 423, 575, 587, 841, 879, 3403, 3607
VspI ATTAAT 1 cut(s) 2816
XapI RAATTY 4 cut(s) 309, 2012, 3626, 3797
XbaI TCTAGA 1 cut(s) 2567
XceI RCATGY 4 cut(s) 1025, 1199, 1759, 2159
XcmI CCANNNNNNNNNTGG 2 cut(s) 535, 3396
XmnI GAANNNNTTC 2 cut(s) 1551, 1641
XspI CTAG 9 cut(s) 705, 930, 1014, 1140, 1752, 2568, 2579, 2625, 3825
ZraI GACGTC 2 cut(s) 689, 998
Zsp2I ATGCAT 1 cut(s) 1820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.