FvH4_5g36692

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000094
Physical Location & Seq
Forward (+)
26908168 .. 26912744
4577 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36692.t1

Sequence Viewer

Length: 4152 bp
ATGCCTCCTAGGCGCCCACGGCAACCCCGTGTGGCTACTTCGACCAATGCCGATGAAGGCAATGAGGTCAGGGGACTGGTTGATGATATTGGGAATATGCTGAGGGATGTCATGGATCGAGCTCCACAACCTCATTCTGCGAAAAGGAGAGAAGTTTATGAAGCTGGAGCCAGAGAGTTCAAGGGTGCCAAGGGACCCCTTGATGCTTATACTTGGGTGGACAAAATGGAAAAAGCTTTTGTGAGCACAGAGTTGCCAGATGAAAAGAAGGTGAAGATGGCAGTAACTTTCCTGGATGATTCAGCACATCACTGGTGGTCGCTTGCCAGCAGGAATGTTGAGGATGCGCTGAATATGTCGTGGGAACAGTTTAAGACTCTTTTCTTGGGGCAATATTACAGTCCTGCCCATCGCAGCAGAATTCAGTCAGATTTTCTGAATATAAAGAAGAGGGATGATGAAGGCGTTATAGAGTTCCAAGAGAGATTCACTTCCCTGAGCTATCATGTGTCGTATTTGGTTCCTGATGAGAGGACCAGGATGGAGATGTTCATTGGGGCACTTGGTGGAGTGTTTGCGGATAAGATGACGGGTGTTTATTACCCGACTTTCTCTGACGCGATTCATGCAGCCATGGCCATTGAGTCTATGGGGATTTATAGTGCTCGGCCACGAGATTTCGGTGGTCCCAGTCAGGGTCCATCCAAGAAAGCTGTTTCATCATCCGCTTCAGGTTCATCAGCTGGTAGTGGCAGTAGTGGGGGATCAGGTTCTCCTTCTCGGTTTAGGGTTAGAGGACGTCACAGGAGACCTGCTAGGAGCCAGTTTGGTAGGCAGCAGTCCGGGCAGTATAGTTCGGGTGGCAGTTTCCATGGTGGGACATCTGGTAGCCGAACTTTTTCTTATGGGCAGCAGCAGCAGTTTTCTGGGTGCTTTGAGTGTGGTAGTCATGACCACTTCAGGAGAGATTGCCCATTGTTGGCTCAGAGGACCACTCCCACCCTACTCAGCCTGTTGGTCAGTCTTCAGCTGGAGGCTCTAGTAGAGGTGCCCAGGGCAGTGCTTCGGTCAGAGGTGGCTCTCAGCGGGGAAGTGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTAGATTTGCCCTCCATGCCAATGTGCCATCCTCGTCTCTTCCAGGCGAGTGGCGTGTGTCTCTACCCTCCGGTGAGGTGATGAGAATAAATTGGGTTTTTAGTGGCTGTGAAGTGGTAGTGGAAGGAGTTATTTTCGAGGCTGATTTAATTCCTTTAGATATAGTGGAGTTTGATGTGATATTGGGAATGGACTTTTTGGAAGCATATAGAGCTATGGTAGATTGTTTCCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTTTGAGGTTGCTTTCCAAGGGGAAAGAGATGTTATTTTTAGTTGCATAATTTCCGCTGTTGCTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTCTAGCTCATGTGGTGGATACAAGTATGGGAGTTGTGGGATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGATATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCGATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACCCAATTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCCGGTGTTGTTTGTTAAGAAGAAAGATGACACCATGAGACTATGCATTGATTATAGGAAGCTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTATCATCAGTTGCGGATCCGAGAGGGTGACATAGCCAAGACTGCTTTTCGGTCACGATATGGTCATTATGAATTTGTGGTGATGCCTTTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATATCTTGATCGTTTCGTGATCGTATTCATAGATGACATTTTGGTTTACTCAAGAAATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCGGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAAAGAGAGCTTAATATGAGACAGAGAAGATGGATGGAGTTAATCAGTGATTATGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTGTCAGTAGATAAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATTATTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGGGACTCTATTGTTTAAAAATCGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAAGAAGCTCATAGTTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCAAGGCTGAAAGGCAGAAGCCTTCAGGATTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGCTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTGGATAAATTGGCGGAGCTCTATGTGAATGAAATTGTGAGGCTTCACGGTGTTCCTGAATCAATAGTGTCAGATCGGGACCCTCGATTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTAAGGGCTTGTGCCATGCAGTTCAGAGGTAGTTGGGATAAAAACCTATCTTTGATGGAATTTGCCTATAATAATAGCTATCATTCTAGCATTGGTATGGCGCCCTTTGAGGCTCTTTATGGGAGGCAGTGTCGCACGCCTTTGTGTTGGAATGAAGTAGGGGAAAAAGAGCTTTGTGGCCCAGAGTTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAAGACTGCTCAGAGTAGGCAGAAAAGTTATGCGGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTGGGTGTTCCTGAAATTATCTCCTTGGAAAGGGATTGTGCGTTTCGGTAAGCGTGGGAAGCTTAGCCCGAGGTATATTGGCCCTTATGAGATTATAGAGCGAGTTGGCTCACTTGCTTATCGATTAGCCTTGCCTCCAGAGTTAGCTAGGATACATAAAGTGTTTCATGTATCCATGCTTCGCAAGTATATTGCCGATCCTTCTCATGTGCTGCAAGAGCAACCGATCAGTTTGACGAGAGATTTGACCTATGAAGAGGAACCGGTTCAGATTCTCGACCGAAAGGAGCAAGTGCTTAGGAACAAGACAATCCCGCTTGTCAAGGTGCTGTGGAGAAGTCATCAAGTAGAAGAAGCTACTTGGGAATCAGAGGAACAAATGATGCAGCAGTATCCGTATCTCTTCGGAGGACATGTATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

1384

Amino Acids

157.02

Weight (kDa)

8.58

Isoelectric Point (pI)

43.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 92 - 187 2.3e-14 Retrotransposon gag protein
RVP_2 PF08284 364 - 466 1.9e-24 Retroviral aspartyl protease
RVT_1 PF00078 597 - 729 5e-26 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 716 - 808 1.6e-30 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 740 - 838 1.1e-32 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 953 - 1010 3.8e-20 Integrase zinc binding domain
SH3_Tf2-1 PF24626 1242 - 1306 5.5e-27 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 802
Acc36I ACCTGC 1 cut(s) 820
Acc65I GGTACC 1 cut(s) 3341
AccB1I GGYRCC 7 cut(s) 12, 185, 1048, 1672, 1907, 3341, 3523
AccII CGCG 2 cut(s) 620, 2054
AccIII TCCGGA 2 cut(s) 1576, 2212
AclWI GGATC 8 cut(s) 123, 772, 1109, 1886, 1954, 1967, 2073, 3920
AcoI YGGCCR 3 cut(s) 636, 668, 2963
AcsI RAATTY 5 cut(s) 420, 2015, 3311, 3482, 3713
AcuI CTGAAG 6 cut(s) 714, 943, 1010, 3030, 3311, 3340
AcyI GRCGYC 4 cut(s) 13, 799, 1673, 3524
AdeI CACNNNGTG 1 cut(s) 566
AfaI GTAC 2 cut(s) 3127, 3343
AfiI CCNNNNNNNGG 6 cut(s) 695, 979, 1723, 2330, 3135, 3758
AflIII ACRYGT 1 cut(s) 4141
AgeI ACCGGT 1 cut(s) 3991
AjiI CACGTC 1 cut(s) 2258
AjnI CCWGG 6 cut(s) 291, 536, 1052, 1186, 1600, 2536
AjuI GAANNNNNNNTTGG 2 cut(s) 3197, 3229
Alw21I GWGCWC 7 cut(s) 124, 248, 667, 1777, 2197, 3234, 3325
Alw26I GTCTC 7 cut(s) 802, 1185, 1209, 1767, 1807, 2386, 2473
AlwI GGATC 8 cut(s) 123, 772, 1109, 1886, 1954, 1967, 2073, 3920
Ama87I CYCGRG 1 cut(s) 3796
Aor13HI TCCGGA 2 cut(s) 1576, 2212
AoxI GGCC 7 cut(s) 636, 668, 1751, 2699, 2963, 3601, 3808
ApoI RAATTY 5 cut(s) 420, 2015, 3311, 3482, 3713
ArsI GACNNNNNNTTYG 4 cut(s) 3284, 3316, 3955, 3987
AsiGI ACCGGT 1 cut(s) 3991
Asp700I GAANNNNTTC 4 cut(s) 898, 1554, 1644, 3993
Asp718I GGTACC 1 cut(s) 3341
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 4 cut(s) 15, 349, 1675, 3526
AspS9I GGNCC 9 cut(s) 194, 534, 686, 698, 990, 3088, 3292, 3602, 3809
AsuC2I CCSGG 4 cut(s) 844, 1119, 1650, 2919
AsuHPI GGTGA 9 cut(s) 283, 1229, 1234, 1982, 2035, 3088, 3163, 3166, 3737
AsuII TTCGAA 2 cut(s) 1393, 2774
AvaI CYCGRG 1 cut(s) 3796
AvaII GGWCC 7 cut(s) 194, 534, 686, 698, 990, 3088, 3292
AvrII CCTAGG 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 1590
BaeGI GKGCMC 2 cut(s) 562, 1053
BalI TGGCCA 2 cut(s) 638, 2965
BamHI GGATCC 1 cut(s) 1959
BanI GGYRCC 7 cut(s) 12, 185, 1048, 1672, 1907, 3341, 3523
BanII GRGCYC 3 cut(s) 124, 3234, 3325
BarI GAAGNNNNNNTAC 4 cut(s) 1374, 1406, 3891, 3923
BauI CACGAG 1 cut(s) 672
BbsI GAAGAC 3 cut(s) 1016, 1718, 2435
Bbv12I GWGCWC 7 cut(s) 124, 248, 667, 1777, 2197, 3234, 3325
BbvCI CCTCAGC 1 cut(s) 101
BceAI ACGGC 2 cut(s) 35, 3046
BcgI CGANNNNNNTGC 2 cut(s) 2270, 2304
BciT130I CCWGG 6 cut(s) 293, 538, 1054, 1188, 1602, 2538
BciVI GTATCC 4 cut(s) 1516, 3873, 3910, 4131
BclI TGATCA 1 cut(s) 1894
BcnI CCSGG 4 cut(s) 844, 1119, 1650, 2919
BcoDI GTCTC 7 cut(s) 802, 1185, 1209, 1767, 1807, 2386, 2473
BfmI CTRYAG 3 cut(s) 1560, 1635, 2640
BfoI RGCGCY 3 cut(s) 16, 1676, 3527
BfuAI ACCTGC 1 cut(s) 820
BfuI GTATCC 4 cut(s) 1516, 3873, 3910, 4131
BglI GCCNNNNNGGC 1 cut(s) 10
BglII AGATCT 1 cut(s) 3706
BlnI CCTAGG 1 cut(s) 8
BlpI GCTNAGC 1 cut(s) 3791
Bme18I GGWCC 7 cut(s) 194, 534, 686, 698, 990, 3088, 3292
BmeT110I CYCGRG 1 cut(s) 3796
BmgBI CACGTC 1 cut(s) 2258
BmgT120I GGNCC 9 cut(s) 194, 534, 686, 698, 990, 3088, 3292, 3602, 3809
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 7 cut(s) 193, 334, 2016, 2236, 2268, 2551, 4101
BmuI ACTGGG 1 cut(s) 684
BpiI GAAGAC 3 cut(s) 1016, 1718, 2435
BplI GAGNNNNNCTC 4 cut(s) 979, 1011, 3639, 3671
BpmI CTGGAG 5 cut(s) 186, 1052, 1674, 2375, 3849
Bpu10I CCTNAGC 3 cut(s) 101, 497, 4025
Bpu1102I GCTNAGC 1 cut(s) 3791
Bpu14I TTCGAA 2 cut(s) 1393, 2774
BpuEI CTTGAG 4 cut(s) 2125, 2366, 3077, 3641
BpuMI CCSGG 4 cut(s) 844, 1119, 1650, 2919
Bsa29I ATCGAT 2 cut(s) 1881, 3850
BsaHI GRCGYC 4 cut(s) 13, 799, 1673, 3524
BsaI GGTCTC 1 cut(s) 802
BsaWI WCCGGW 5 cut(s) 1214, 1576, 1777, 2212, 3991
BsaXI ACNNNNNCTCC 9 cut(s) 2179, 2209, 2217, 2247, 3407, 3437, 3538, 3568, 4128
Bsc4I CCNNNNNNNGG 6 cut(s) 695, 979, 1723, 2330, 3135, 3758
Bse118I RCCGGY 1 cut(s) 3991
Bse1I ACTGG 8 cut(s) 81, 317, 690, 823, 2685, 2702, 3074, 3194
Bse21I CCTNAGG 1 cut(s) 1590
Bse3DI GCAATG 1 cut(s) 67
BseAI TCCGGA 2 cut(s) 1576, 2212
BseBI CCWGG 6 cut(s) 293, 538, 1054, 1188, 1602, 2538
BseCI ATCGAT 2 cut(s) 1881, 3850
BseLI CCNNNNNNNGG 6 cut(s) 695, 979, 1723, 2330, 3135, 3758
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 9 cut(s) 92, 488, 998, 1021, 1096, 1581, 1682, 3389, 3680
BseNI ACTGG 8 cut(s) 81, 317, 690, 823, 2685, 2702, 3074, 3194
BseRI GAGGAG 1 cut(s) 1607
BseSI GKGCMC 2 cut(s) 562, 1053
BsgI GTGCAG 1 cut(s) 3165
Bsh1236I CGCG 2 cut(s) 620, 2054
Bsh1285I CGRYCG 1 cut(s) 4009
BshFI GGCC 7 cut(s) 638, 670, 1753, 2701, 2965, 3603, 3810
BshNI GGYRCC 7 cut(s) 12, 185, 1048, 1672, 1907, 3341, 3523
BshTI ACCGGT 1 cut(s) 3991
BshVI ATCGAT 2 cut(s) 1881, 3850
BsiEI CGRYCG 1 cut(s) 4009
BsiHKAI GWGCWC 7 cut(s) 124, 248, 667, 1777, 2197, 3234, 3325
BsiHKCI CYCGRG 1 cut(s) 3796
BsiSI CCGG 9 cut(s) 843, 1119, 1215, 1577, 1650, 1778, 2213, 2918, 3992
BslFI GGGAC 7 cut(s) 87, 207, 672, 892, 2830, 3101, 3305
BslI CCNNNNNNNGG 6 cut(s) 695, 979, 1723, 2330, 3135, 3758
BsmAI GTCTC 7 cut(s) 802, 1185, 1209, 1767, 1807, 2386, 2473
BsmBI CGTCTC 1 cut(s) 1185
BsmFI GGGAC 7 cut(s) 87, 207, 672, 892, 2830, 3101, 3305
BsmI GAATGC 1 cut(s) 1129
BsnI GGCC 7 cut(s) 638, 670, 1753, 2701, 2965, 3603, 3810
Bso31I GGTCTC 1 cut(s) 802
BsoBI CYCGRG 1 cut(s) 3796
Bsp119I TTCGAA 2 cut(s) 1393, 2774
Bsp1286I GDGCHC 9 cut(s) 124, 248, 562, 667, 1053, 1777, 2197, 3234, 3325
Bsp13I TCCGGA 2 cut(s) 1576, 2212
Bsp1720I GCTNAGC 1 cut(s) 3791
Bsp19I CCATGG 4 cut(s) 633, 871, 1766, 3099
BspANI GGCC 7 cut(s) 638, 670, 1753, 2701, 2965, 3603, 3810
BspCNI CTCAG 9 cut(s) 93, 489, 997, 1020, 1095, 1582, 1681, 3388, 3679
BspDI ATCGAT 2 cut(s) 1881, 3850
BspEI TCCGGA 2 cut(s) 1576, 2212
BspFNI CGCG 2 cut(s) 620, 2054
BspHI TCATGA 3 cut(s) 949, 2070, 2347
BspMI ACCTGC 1 cut(s) 820
BspPI GGATC 8 cut(s) 123, 772, 1109, 1886, 1954, 1967, 2073, 3920
BspQI GCTCTTC 1 cut(s) 3330
BspT104I TTCGAA 2 cut(s) 1393, 2774
BspT107I GGYRCC 7 cut(s) 12, 185, 1048, 1672, 1907, 3341, 3523
BspTNI GGTCTC 1 cut(s) 802
BsrDI GCAATG 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 3991
BsrI ACTGG 8 cut(s) 81, 317, 690, 823, 2685, 2702, 3074, 3194
BssAI RCCGGY 1 cut(s) 3991
BssNI GRCGYC 4 cut(s) 13, 799, 1673, 3524
BssSI CACGAG 1 cut(s) 672
BssT1I CCWWGG 8 cut(s) 8, 189, 633, 871, 1423, 1766, 3099, 3752
Bst2BI CACGAG 1 cut(s) 672
Bst2UI CCWGG 6 cut(s) 293, 538, 1054, 1188, 1602, 2538
Bst4CI ACNGT 6 cut(s) 369, 401, 1852, 2733, 3146, 3263
BstACI GRCGYC 4 cut(s) 13, 799, 1673, 3524
BstAPI GCANNNNNTGC 1 cut(s) 2909
BstBI TTCGAA 2 cut(s) 1393, 2774
BstC8I GCNNGC 7 cut(s) 324, 328, 1098, 2156, 2361, 2637, 3560
BstDSI CCRYGG 6 cut(s) 17, 633, 871, 1766, 2052, 3099
BstENI CCTNNNNNAGG 1 cut(s) 3756
BstFNI CGCG 2 cut(s) 620, 2054
BstH2I RGCGCY 3 cut(s) 16, 1676, 3527
BstHHI GCGC 4 cut(s) 15, 349, 1675, 3526
BstMAI GTCTC 7 cut(s) 802, 1185, 1209, 1767, 1807, 2386, 2473
BstMCI CGRYCG 1 cut(s) 4009
BstNI CCWGG 6 cut(s) 293, 538, 1054, 1188, 1602, 2538
BstNSI RCATGY 2 cut(s) 1762, 4145
BstSFI CTRYAG 3 cut(s) 1560, 1635, 2640
BstSLI GKGCMC 2 cut(s) 562, 1053
BstUI CGCG 2 cut(s) 620, 2054
BstV2I GAAGAC 3 cut(s) 1016, 1718, 2435
BstX2I RGATCY 3 cut(s) 1959, 2065, 3706
BstXI CCANNNNNNTGG 1 cut(s) 1194
BstYI RGATCY 3 cut(s) 1959, 2065, 3706
Bsu15I ATCGAT 2 cut(s) 1881, 3850
Bsu36I CCTNAGG 1 cut(s) 1590
BsuI GTATCC 4 cut(s) 1516, 3873, 3910, 4131
BsuRI GGCC 7 cut(s) 638, 670, 1753, 2701, 2965, 3603, 3810
BsuTUI ATCGAT 2 cut(s) 1881, 3850
BtgI CCRYGG 6 cut(s) 17, 633, 871, 1766, 2052, 3099
BtgZI GCGATG 1 cut(s) 395
BtrI CACGTC 1 cut(s) 2258
BtsI GCAGTG 3 cut(s) 1065, 3360, 3557
BtsIMutI CAGTG 9 cut(s) 310, 1065, 1857, 2156, 2512, 3081, 3201, 3360, 3557
BveI ACCTGC 1 cut(s) 820
Cac8I GCNNGC 7 cut(s) 324, 328, 1098, 2156, 2361, 2637, 3560
CciI TCATGA 3 cut(s) 949, 2070, 2347
CfoI GCGC 4 cut(s) 15, 349, 1675, 3526
Cfr10I RCCGGY 1 cut(s) 3991
Cfr13I GGNCC 9 cut(s) 194, 534, 686, 698, 990, 3088, 3292, 3602, 3809
Cfr42I CCGCGG 1 cut(s) 2055
ClaI ATCGAT 2 cut(s) 1881, 3850
CseI GACGC 1 cut(s) 626
Csp6I GTAC 2 cut(s) 3126, 3342
CspAI ACCGGT 1 cut(s) 3991
CviQI GTAC 2 cut(s) 3126, 3342
DinI GGCGCC 3 cut(s) 14, 1674, 3525
DraI TTTAAA 1 cut(s) 2830
DraIII CACNNNGTG 1 cut(s) 566
EaeI YGGCCR 3 cut(s) 636, 668, 2963
EciI GGCGGA 1 cut(s) 3242
Ecl136II GAGCTC 3 cut(s) 122, 3232, 3323
Eco130I CCWWGG 8 cut(s) 8, 189, 633, 871, 1423, 1766, 3099, 3752
Eco24I GRGCYC 3 cut(s) 124, 3234, 3325
Eco31I GGTCTC 1 cut(s) 802
Eco47I GGWCC 7 cut(s) 194, 534, 686, 698, 990, 3088, 3292
Eco53kI GAGCTC 3 cut(s) 122, 3232, 3323
Eco57I CTGAAG 6 cut(s) 714, 943, 1010, 3030, 3311, 3340
Eco81I CCTNAGG 1 cut(s) 1590
Eco88I CYCGRG 1 cut(s) 3796
EcoICRI GAGCTC 3 cut(s) 122, 3232, 3323
EcoNI CCTNNNNNAGG 1 cut(s) 3756
EcoO109I RGGNCCY 2 cut(s) 194, 3292
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 6 cut(s) 291, 536, 1052, 1186, 1600, 2536
EcoT14I CCWWGG 8 cut(s) 8, 189, 633, 871, 1423, 1766, 3099, 3752
EcoT22I ATGCAT 1 cut(s) 1823
EcoT38I GRGCYC 3 cut(s) 124, 3234, 3325
EgeI GGCGCC 3 cut(s) 14, 1674, 3525
EheI GGCGCC 3 cut(s) 14, 1674, 3525
ErhI CCWWGG 8 cut(s) 8, 189, 633, 871, 1423, 1766, 3099, 3752
Esp3I CGTCTC 1 cut(s) 1185
FalI AAGNNNNNCTT 2 cut(s) 2168, 2200
FaqI GGGAC 7 cut(s) 87, 207, 672, 892, 2830, 3101, 3305
FauI CCCGC 4 cut(s) 1079, 2059, 2715, 4050
FauNDI CATATG 1 cut(s) 2905
FbaI TGATCA 1 cut(s) 1894
FriOI GRGCYC 3 cut(s) 124, 3234, 3325
GlaI GCGC 4 cut(s) 14, 348, 1674, 3525
GsuI CTGGAG 5 cut(s) 186, 1052, 1674, 2375, 3849
HaeII RGCGCY 3 cut(s) 16, 1676, 3527
HaeIII GGCC 7 cut(s) 638, 670, 1753, 2701, 2965, 3603, 3810
HapII CCGG 9 cut(s) 843, 1119, 1215, 1577, 1650, 1778, 2213, 2918, 3992
HgaI GACGC 1 cut(s) 626
HhaI GCGC 4 cut(s) 15, 349, 1675, 3526
Hin1I GRCGYC 4 cut(s) 13, 799, 1673, 3524
Hin6I GCGC 4 cut(s) 13, 347, 1673, 3524
HinP1I GCGC 4 cut(s) 13, 347, 1673, 3524
HindIII AAGCTT 2 cut(s) 234, 3788
HpaII CCGG 9 cut(s) 843, 1119, 1215, 1577, 1650, 1778, 2213, 2918, 3992
HphI GGTGA 9 cut(s) 283, 1229, 1234, 1982, 2035, 3088, 3163, 3166, 3737
Hpy166II GTNNAC 3 cut(s) 220, 2137, 2457
Hpy8I GTNNAC 3 cut(s) 220, 2137, 2457
HpyAV CCTTC 8 cut(s) 50, 262, 455, 786, 1262, 2941, 3054, 3939
HpyCH4III ACNGT 6 cut(s) 369, 401, 1852, 2733, 3146, 3263
HpyCH4IV ACGT 2 cut(s) 799, 2257
HpySE526I ACGT 2 cut(s) 799, 2257
Hsp92I GRCGYC 4 cut(s) 13, 799, 1673, 3524
HspAI GCGC 4 cut(s) 13, 347, 1673, 3524
KasI GGCGCC 3 cut(s) 12, 1672, 3523
KflI GGGWCCC 2 cut(s) 194, 3292
Kpn2I TCCGGA 2 cut(s) 1576, 2212
KpnI GGTACC 1 cut(s) 3345
Ksp22I TGATCA 1 cut(s) 1894
KspI CCGCGG 1 cut(s) 2055
LguI GCTCTTC 1 cut(s) 3330
LweI GCATC 7 cut(s) 193, 334, 2016, 2236, 2268, 2551, 4101
MaeII ACGT 2 cut(s) 799, 2257
MaeIII GTNAC 6 cut(s) 283, 800, 1846, 1970, 1995, 3619
MfeI CAATTG 2 cut(s) 1718, 2315
MflI RGATCY 3 cut(s) 1959, 2065, 3706
MhlI GDGCHC 9 cut(s) 124, 248, 562, 667, 1053, 1777, 2197, 3234, 3325
MlsI TGGCCA 2 cut(s) 638, 2965
MluNI TGGCCA 2 cut(s) 638, 2965
Mly113I GGCGCC 3 cut(s) 13, 1673, 3524
MlyI GAGTC 6 cut(s) 370, 653, 2449, 2812, 3162, 3648
MmeI TCCRAC 1 cut(s) 3551
Mox20I TGGCCA 2 cut(s) 638, 2965
Mph1103I ATGCAT 1 cut(s) 1823
MroI TCCGGA 2 cut(s) 1576, 2212
MroXI GAANNNNTTC 4 cut(s) 898, 1554, 1644, 3993
MscI TGGCCA 2 cut(s) 638, 2965
MslI CAYNNNNRTG 4 cut(s) 1164, 2930, 3098, 3518
Msp20I TGGCCA 2 cut(s) 638, 2965
MspA1I CMGCKG 7 cut(s) 743, 1030, 1086, 1463, 1694, 2054, 2366
MspI CCGG 9 cut(s) 843, 1119, 1215, 1577, 1650, 1778, 2213, 2918, 3992
MunI CAATTG 2 cut(s) 1718, 2315
Mva1269I GAATGC 1 cut(s) 1129
MvaI CCWGG 6 cut(s) 293, 538, 1054, 1188, 1602, 2538
MvnI CGCG 2 cut(s) 620, 2054
NarI GGCGCC 3 cut(s) 13, 1673, 3524
NciI CCSGG 4 cut(s) 844, 1119, 1650, 2919
NcoI CCATGG 4 cut(s) 633, 871, 1766, 3099
NdeI CATATG 1 cut(s) 2905
NmeAIII GCCGAG 1 cut(s) 646
NmuCI GTSAC 4 cut(s) 800, 1846, 1970, 1995
NsiI ATGCAT 1 cut(s) 1823
NspI RCATGY 2 cut(s) 1762, 4145
NspV TTCGAA 2 cut(s) 1393, 2774
PagI TCATGA 3 cut(s) 949, 2070, 2347
PasI CCCWGGG 1 cut(s) 1053
PciI ACATGT 1 cut(s) 4141
PciSI GCTCTTC 1 cut(s) 3330
PcsI WCGNNNNNNNCGW 2 cut(s) 25, 3295
PctI GAATGC 1 cut(s) 1129
PdmI GAANNNNTTC 4 cut(s) 898, 1554, 1644, 3993
PfeI GAWTC 7 cut(s) 299, 486, 622, 1840, 3272, 4000, 4094
PflFI GACNNNGTC 1 cut(s) 2259
PfoI TCCNGGA 4 cut(s) 291, 1117, 1648, 2536
PinAI ACCGGT 1 cut(s) 3991
PleI GAGTC 6 cut(s) 370, 652, 2448, 2812, 3162, 3648
PluTI GGCGCC 3 cut(s) 16, 1676, 3527
PpsI GAGTC 6 cut(s) 370, 652, 2448, 2812, 3162, 3648
PpuMI RGGWCCY 2 cut(s) 194, 3292
PscI ACATGT 1 cut(s) 4141
Psp124BI GAGCTC 3 cut(s) 124, 3234, 3325
Psp5II RGGWCCY 2 cut(s) 194, 3292
Psp6I CCWGG 6 cut(s) 291, 536, 1052, 1186, 1600, 2536
PspGI CCWGG 6 cut(s) 291, 536, 1052, 1186, 1600, 2536
PspPI GGNCC 9 cut(s) 194, 534, 686, 698, 990, 3088, 3292, 3602, 3809
PspPPI RGGWCCY 2 cut(s) 194, 3292
PsuI RGATCY 3 cut(s) 1959, 2065, 3706
PsyI GACNNNGTC 1 cut(s) 2259
PvuII CAGCTG 2 cut(s) 743, 1030
RsaI GTAC 2 cut(s) 3127, 3343
RsaNI GTAC 2 cut(s) 3126, 3342
RseI CAYNNNNRTG 4 cut(s) 1164, 2930, 3098, 3518
SacI GAGCTC 3 cut(s) 124, 3234, 3325
SacII CCGCGG 1 cut(s) 2055
SapI GCTCTTC 1 cut(s) 3330
Sau96I GGNCC 9 cut(s) 194, 534, 686, 698, 990, 3088, 3292, 3602, 3809
SchI GAGTC 6 cut(s) 370, 653, 2449, 2812, 3162, 3648
SduI GDGCHC 9 cut(s) 124, 248, 562, 667, 1053, 1777, 2197, 3234, 3325
SfaNI GCATC 7 cut(s) 193, 334, 2016, 2236, 2268, 2551, 4101
SfcI CTRYAG 3 cut(s) 1560, 1635, 2640
SfoI GGCGCC 3 cut(s) 14, 1674, 3525
Sfr303I CCGCGG 1 cut(s) 2055
SfuI TTCGAA 2 cut(s) 1393, 2774
SgrBI CCGCGG 1 cut(s) 2055
SinI GGWCC 7 cut(s) 194, 534, 686, 698, 990, 3088, 3292
SmiMI CAYNNNNRTG 4 cut(s) 1164, 2930, 3098, 3518
SmlI CTYRAG 4 cut(s) 2140, 2381, 3056, 3656
SmoI CTYRAG 4 cut(s) 2140, 2381, 3056, 3656
SspDI GGCGCC 3 cut(s) 12, 1672, 3523
SspI AATATT 1 cut(s) 395
SstI GAGCTC 3 cut(s) 124, 3234, 3325
StyI CCWWGG 8 cut(s) 8, 189, 633, 871, 1423, 1766, 3099, 3752
TaaI ACNGT 6 cut(s) 369, 401, 1852, 2733, 3146, 3263
TaiI ACGT 2 cut(s) 802, 2260
TaqII GACCGA 3 cut(s) 1056, 1983, 4023
TauI GCSGC 3 cut(s) 2057, 2326, 2786
TfiI GAWTC 7 cut(s) 299, 486, 622, 1840, 3272, 4000, 4094
TscAI CASTG 9 cut(s) 317, 1065, 1857, 2156, 2512, 3081, 3201, 3367, 3557
TseFI GTSAC 4 cut(s) 800, 1846, 1970, 1995
Tsp45I GTSAC 4 cut(s) 800, 1846, 1970, 1995
TspGWI ACGGA 3 cut(s) 1857, 3686, 4113
TspRI CASTG 9 cut(s) 317, 1065, 1857, 2156, 2512, 3081, 3201, 3367, 3557
Tth111I GACNNNGTC 1 cut(s) 2259
VpaK11BI GGWCC 7 cut(s) 194, 534, 686, 698, 990, 3088, 3292
XagI CCTNNNNNAGG 1 cut(s) 3756
XapI RAATTY 5 cut(s) 420, 2015, 3311, 3482, 3713
XbaI TCTAGA 1 cut(s) 2252
XceI RCATGY 2 cut(s) 1762, 4145
XcmI CCANNNNNNNNNTGG 2 cut(s) 646, 3081
XmaJI CCTAGG 1 cut(s) 8
XmnI GAANNNNTTC 4 cut(s) 898, 1554, 1644, 3993
ZraI GACGTC 1 cut(s) 800
Zsp2I ATGCAT 1 cut(s) 1823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.