transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Integrase_H2C2 | PF17921 | 12 - 68 | 8.3e-20 | Integrase zinc binding domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 571 |
| AccII | CGCG | 1 cut(s) | 77 |
| AccIII | TCCGGA | 1 cut(s) | 247 |
| AciI | CCGC | 4 cut(s) | 75, 203, 368, 571 |
| AclI | AACGTT | 1 cut(s) | 30 |
| AclWI | GGATC | 1 cut(s) | 270 |
| AcoI | YGGCCR | 1 cut(s) | 137 |
| AcsI | RAATTY | 1 cut(s) | 506 |
| AfaI | GTAC | 3 cut(s) | 100, 128, 301 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 743 |
| AflIII | ACRYGT | 1 cut(s) | 594 |
| AgsI | TTSAA | 2 cut(s) | 35, 790 |
| AjnI | CCWGG | 1 cut(s) | 91 |
| AluBI | AGCT | 5 cut(s) | 65, 164, 356, 430, 710 |
| AluI | AGCT | 5 cut(s) | 65, 164, 356, 430, 710 |
| Alw26I | GTCTC | 1 cut(s) | 7 |
| AlwI | GGATC | 1 cut(s) | 270 |
| Ama87I | CYCGRG | 1 cut(s) | 443 |
| Aor13HI | TCCGGA | 1 cut(s) | 247 |
| AoxI | GGCC | 2 cut(s) | 137, 696 |
| ApeKI | GCWGC | 1 cut(s) | 161 |
| ApoI | RAATTY | 1 cut(s) | 506 |
| AspS9I | GGNCC | 3 cut(s) | 697, 732, 775 |
| AsuHPI | GGTGA | 3 cut(s) | 262, 337, 340 |
| AvaI | CYCGRG | 1 cut(s) | 443 |
| AvaII | GGWCC | 2 cut(s) | 732, 775 |
| BalI | TGGCCA | 1 cut(s) | 139 |
| BbsI | GAAGAC | 1 cut(s) | 597 |
| BbvI | GCAGC | 1 cut(s) | 173 |
| BccI | CCATC | 5 cut(s) | 302, 311, 551, 552, 646 |
| BciT130I | CCWGG | 1 cut(s) | 93 |
| BcoDI | GTCTC | 1 cut(s) | 7 |
| BisI | GCNGC | 1 cut(s) | 162 |
| BlsI | GCNGC | 1 cut(s) | 163 |
| BmcAI | AGTACT | 1 cut(s) | 128 |
| Bme1390I | CCNGG | 1 cut(s) | 93 |
| Bme18I | GGWCC | 2 cut(s) | 732, 775 |
| BmeT110I | CYCGRG | 1 cut(s) | 443 |
| BmgT120I | GGNCC | 3 cut(s) | 697, 732, 775 |
| BmiI | GGNNCC | 2 cut(s) | 699, 734 |
| BmrFI | CCNGG | 1 cut(s) | 93 |
| BmsI | GCATC | 2 cut(s) | 97, 457 |
| BpiI | GAAGAC | 1 cut(s) | 597 |
| BpuEI | CTTGAG | 1 cut(s) | 104 |
| BsaBI | GATNNNNATC | 1 cut(s) | 478 |
| BsaJI | CCNNGG | 1 cut(s) | 273 |
| BsaWI | WCCGGW | 1 cut(s) | 247 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 743 |
| Bse8I | GATNNNNATC | 1 cut(s) | 478 |
| BseAI | TCCGGA | 1 cut(s) | 247 |
| BseBI | CCWGG | 1 cut(s) | 93 |
| BseDI | CCNNGG | 1 cut(s) | 273 |
| BseGI | GGATG | 4 cut(s) | 88, 313, 544, 753 |
| BseJI | GATNNNNATC | 1 cut(s) | 478 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 743 |
| BseMII | CTCAG | 2 cut(s) | 558, 770 |
| BseXI | GCAGC | 1 cut(s) | 173 |
| Bsh1236I | CGCG | 1 cut(s) | 77 |
| BshFI | GGCC | 2 cut(s) | 139, 698 |
| BsiHKCI | CYCGRG | 1 cut(s) | 443 |
| BsiSI | CCGG | 1 cut(s) | 248 |
| BsiWI | CGTACG | 1 cut(s) | 299 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 743 |
| BsmAI | GTCTC | 1 cut(s) | 7 |
| BsnI | GGCC | 2 cut(s) | 139, 698 |
| BsoBI | CYCGRG | 1 cut(s) | 443 |
| Bsp13I | TCCGGA | 1 cut(s) | 247 |
| Bsp143I | GATC | 3 cut(s) | 262, 337, 460 |
| Bsp19I | CCATGG | 1 cut(s) | 273 |
| BspACI | CCGC | 4 cut(s) | 75, 203, 368, 571 |
| BspANI | GGCC | 2 cut(s) | 139, 698 |
| BspCNI | CTCAG | 2 cut(s) | 559, 771 |
| BspEI | TCCGGA | 1 cut(s) | 247 |
| BspFNI | CGCG | 1 cut(s) | 77 |
| BspLI | GGNNCC | 2 cut(s) | 699, 734 |
| BspPI | GGATC | 1 cut(s) | 270 |
| BsrBI | CCGCTC | 1 cut(s) | 571 |
| BssECI | CCNNGG | 1 cut(s) | 273 |
| BssMI | GATC | 3 cut(s) | 262, 337, 460 |
| BssT1I | CCWWGG | 1 cut(s) | 273 |
| Bst2UI | CCWGG | 1 cut(s) | 93 |
| Bst4CI | ACNGT | 3 cut(s) | 219, 674, 726 |
| Bst6I | CTCTTC | 1 cut(s) | 5 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 238 |
| BstC8I | GCNNGC | 1 cut(s) | 191 |
| BstDEI | CTNAG | 2 cut(s) | 567, 779 |
| BstDSI | CCRYGG | 1 cut(s) | 273 |
| BstF5I | GGATG | 4 cut(s) | 88, 313, 544, 753 |
| BstFNI | CGCG | 1 cut(s) | 77 |
| BstKTI | GATC | 3 cut(s) | 265, 340, 463 |
| BstMAI | GTCTC | 1 cut(s) | 7 |
| BstMBI | GATC | 3 cut(s) | 262, 337, 460 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 186, 238 |
| BstNI | CCWGG | 1 cut(s) | 93 |
| BstNSI | RCATGY | 1 cut(s) | 598 |
| BstSCI | CCNGG | 1 cut(s) | 91 |
| BstUI | CGCG | 1 cut(s) | 77 |
| BstV1I | GCAGC | 1 cut(s) | 173 |
| BstV2I | GAAGAC | 1 cut(s) | 597 |
| BsuRI | GGCC | 2 cut(s) | 139, 698 |
| BtgI | CCRYGG | 1 cut(s) | 273 |
| BtsCI | GGATG | 4 cut(s) | 88, 313, 544, 753 |
| BtsI | GCAGTG | 1 cut(s) | 534 |
| BtsIMutI | CAGTG | 2 cut(s) | 534, 731 |
| Cac8I | GCNNGC | 1 cut(s) | 191 |
| Cfr13I | GGNCC | 3 cut(s) | 697, 732, 775 |
| Csp6I | GTAC | 3 cut(s) | 99, 127, 300 |
| CviAII | CATG | 4 cut(s) | 145, 274, 434, 595 |
| CviJI | RGCY | 9 cut(s) | 65, 139, 164, 356, 430, 605, 647, 698, 710 |
| CviKI_1 | RGCY | 9 cut(s) | 65, 139, 164, 356, 430, 605, 647, 698, 710 |
| CviQI | GTAC | 3 cut(s) | 99, 127, 300 |
| DdeI | CTNAG | 2 cut(s) | 567, 779 |
| DpnI | GATC | 3 cut(s) | 264, 339, 462 |
| DpnII | GATC | 3 cut(s) | 262, 337, 460 |
| DraI | TTTAAA | 1 cut(s) | 622 |
| EaeI | YGGCCR | 1 cut(s) | 137 |
| Eam1104I | CTCTTC | 1 cut(s) | 5 |
| EarI | CTCTTC | 1 cut(s) | 5 |
| Eco130I | CCWWGG | 1 cut(s) | 273 |
| Eco47I | GGWCC | 2 cut(s) | 732, 775 |
| Eco88I | CYCGRG | 1 cut(s) | 443 |
| EcoO109I | RGGNCCY | 1 cut(s) | 732 |
| EcoRII | CCWGG | 1 cut(s) | 91 |
| EcoT14I | CCWWGG | 1 cut(s) | 273 |
| ErhI | CCWWGG | 1 cut(s) | 273 |
| FaeI | CATG | 4 cut(s) | 148, 277, 437, 598 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 365, 397 |
| FatI | CATG | 4 cut(s) | 144, 273, 433, 594 |
| Fnu4HI | GCNGC | 1 cut(s) | 162 |
| FokI | GGATG | 4 cut(s) | 75, 320, 531, 760 |
| Fsp4HI | GCNGC | 1 cut(s) | 162 |
| GluI | GCNGC | 1 cut(s) | 162 |
| HaeIII | GGCC | 2 cut(s) | 139, 698 |
| HapII | CCGG | 1 cut(s) | 248 |
| Hin1II | CATG | 4 cut(s) | 148, 277, 437, 598 |
| HindIII | AAGCTT | 2 cut(s) | 428, 708 |
| HinfI | GANTC | 4 cut(s) | 115, 342, 446, 474 |
| HpaII | CCGG | 1 cut(s) | 248 |
| HphI | GGTGA | 3 cut(s) | 262, 337, 340 |
| Hpy166II | GTNNAC | 2 cut(s) | 415, 502 |
| Hpy188I | TCNGA | 3 cut(s) | 114, 460, 568 |
| Hpy188III | TCNNGA | 4 cut(s) | 248, 443, 464, 778 |
| Hpy8I | GTNNAC | 2 cut(s) | 415, 502 |
| Hpy99I | CGWCG | 1 cut(s) | 223 |
| HpyAV | CCTTC | 1 cut(s) | 490 |
| HpyCH4III | ACNGT | 3 cut(s) | 219, 674, 726 |
| HpyCH4IV | ACGT | 1 cut(s) | 30 |
| HpyCH4V | TGCA | 4 cut(s) | 88, 161, 232, 662 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 186, 238 |
| HpyF3I | CTNAG | 2 cut(s) | 567, 779 |
| HpySE526I | ACGT | 1 cut(s) | 30 |
| Hsp92II | CATG | 4 cut(s) | 148, 277, 437, 598 |
| Kpn2I | TCCGGA | 1 cut(s) | 247 |
| Kzo9I | GATC | 3 cut(s) | 262, 337, 460 |
| LpnPI | CCDG | 8 cut(s) | 78, 98, 105, 203, 261, 290, 350, 791 |
| Lsp1109I | GCAGC | 1 cut(s) | 173 |
| LweI | GCATC | 2 cut(s) | 97, 457 |
| MaeII | ACGT | 1 cut(s) | 30 |
| MaeIII | GTNAC | 2 cut(s) | 291, 674 |
| MalI | GATC | 3 cut(s) | 264, 339, 462 |
| MbiI | CCGCTC | 1 cut(s) | 571 |
| MboI | GATC | 3 cut(s) | 262, 337, 460 |
| MboII | GAAGA | 2 cut(s) | 22, 602 |
| MlsI | TGGCCA | 1 cut(s) | 139 |
| MluCI | AATT | 8 cut(s) | 156, 243, 395, 420, 506, 521, 527, 617 |
| MluNI | TGGCCA | 1 cut(s) | 139 |
| MlyI | GAGTC | 3 cut(s) | 109, 336, 455 |
| MnlI | CCTC | 4 cut(s) | 306, 486, 558, 594 |
| Mox20I | TGGCCA | 1 cut(s) | 139 |
| MroI | TCCGGA | 1 cut(s) | 247 |
| MscI | TGGCCA | 1 cut(s) | 139 |
| MseI | TTAA | 4 cut(s) | 42, 372, 621, 809 |
| MslI | CAYNNNNRTG | 1 cut(s) | 93 |
| Msp20I | TGGCCA | 1 cut(s) | 139 |
| MspI | CCGG | 1 cut(s) | 248 |
| MspR9I | CCNGG | 1 cut(s) | 93 |
| MvaI | CCWGG | 1 cut(s) | 93 |
| MvnI | CGCG | 1 cut(s) | 77 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 186, 238 |
| NcoI | CCATGG | 1 cut(s) | 273 |
| NdeII | GATC | 3 cut(s) | 262, 337, 460 |
| NlaIII | CATG | 4 cut(s) | 148, 277, 437, 598 |
| NlaIV | GGNNCC | 2 cut(s) | 699, 734 |
| NspI | RCATGY | 1 cut(s) | 598 |
| PciI | ACATGT | 1 cut(s) | 594 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 469 |
| PfeI | GAWTC | 1 cut(s) | 474 |
| Pfl23II | CGTACG | 1 cut(s) | 299 |
| PkrI | GCNGC | 1 cut(s) | 163 |
| PleI | GAGTC | 3 cut(s) | 109, 336, 454 |
| PpsI | GAGTC | 3 cut(s) | 109, 336, 454 |
| PpuMI | RGGWCCY | 1 cut(s) | 732 |
| PscI | ACATGT | 1 cut(s) | 594 |
| Psp1406I | AACGTT | 1 cut(s) | 30 |
| Psp5II | RGGWCCY | 1 cut(s) | 732 |
| Psp6I | CCWGG | 1 cut(s) | 91 |
| PspGI | CCWGG | 1 cut(s) | 91 |
| PspLI | CGTACG | 1 cut(s) | 299 |
| PspN4I | GGNNCC | 2 cut(s) | 699, 734 |
| PspPI | GGNCC | 3 cut(s) | 697, 732, 775 |
| PspPPI | RGGWCCY | 1 cut(s) | 732 |
| RsaI | GTAC | 3 cut(s) | 100, 128, 301 |
| RsaNI | GTAC | 3 cut(s) | 99, 127, 300 |
| RseI | CAYNNNNRTG | 1 cut(s) | 93 |
| SaqAI | TTAA | 4 cut(s) | 42, 372, 621, 809 |
| SatI | GCNGC | 1 cut(s) | 162 |
| Sau3AI | GATC | 3 cut(s) | 262, 337, 460 |
| Sau96I | GGNCC | 3 cut(s) | 697, 732, 775 |
| ScaI | AGTACT | 1 cut(s) | 128 |
| SchI | GAGTC | 3 cut(s) | 109, 336, 455 |
| ScrFI | CCNGG | 1 cut(s) | 93 |
| SfaNI | GCATC | 2 cut(s) | 97, 457 |
| SinI | GGWCC | 2 cut(s) | 732, 775 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 93 |
| SmlI | CTYRAG | 1 cut(s) | 119 |
| SmoI | CTYRAG | 1 cut(s) | 119 |
| Sse9I | AATT | 8 cut(s) | 156, 243, 395, 420, 506, 521, 527, 617 |
| SsiI | CCGC | 4 cut(s) | 75, 203, 368, 571 |
| StyD4I | CCNGG | 1 cut(s) | 91 |
| StyI | CCWWGG | 1 cut(s) | 273 |
| TaaI | ACNGT | 3 cut(s) | 219, 674, 726 |
| TaiI | ACGT | 1 cut(s) | 33 |
| TaqI | TCGA | 3 cut(s) | 340, 472, 683 |
| TasI | AATT | 8 cut(s) | 156, 243, 395, 420, 506, 521, 527, 617 |
| TatI | WGTACW | 1 cut(s) | 126 |
| TfiI | GAWTC | 1 cut(s) | 474 |
| Tru1I | TTAA | 4 cut(s) | 42, 372, 621, 809 |
| Tru9I | TTAA | 4 cut(s) | 42, 372, 621, 809 |
| TscAI | CASTG | 2 cut(s) | 541, 731 |
| TseI | GCWGC | 1 cut(s) | 161 |
| TspDTI | ATGAA | 4 cut(s) | 75, 161, 422, 764 |
| TspRI | CASTG | 2 cut(s) | 541, 731 |
| VpaK11BI | GGWCC | 2 cut(s) | 732, 775 |
| XapI | RAATTY | 1 cut(s) | 506 |
| XceI | RCATGY | 1 cut(s) | 598 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 249, 686 |
| ZrmI | AGTACT | 1 cut(s) | 128 |