Rw4G018490

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000094
Physical Location & Seq
Reverse (-)
41050629 .. 41051696
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G018490.1

Sequence Viewer

Length: 1035 bp
ATGGCTCGTAATCGCCTAGCACGTGGGAGAACTCCGGTTGAGGAAGATGAGCAGATACGTAGGGGGTTTGCGGATACTTTTGGGCAGTTCTTTCGGCAGATTGCTGCAGCGCTCCCCGGGTCAAGTACCGACTATACTGTGGAGAGTGCTAGGAGGCATGGGGCTCAGACTTTTGCTCCTGCCGCCTCACCTGTAAAGGCACAGCGGTGGCTTGACAGGATGGAGAGAGTTTTCTCCCATATGGACCTTCCAGAGGACAGGAAAGTGAATTTGGCGGTACAGTTCCTTGAGGATACCGCCTACCATTGGTGGACTGGTGTTGTCAATGACCCTGTAAATGCTGGCCCGATGACATGGGATATGTTCAAGACCCATTTCTATGGACGGTACTTTAGTGATGCCCACCTTAATCGGATGCAGGACCAGTTCTTGAGTTTGGAGAAGAGAGATGATCAGTCAGTGTTGGAGTTTGAGCAGGAGTTTCTCTCCTTGGCTCACCATGTGCCAGATTTGGTTCGTACTGAGCAAAGTAAGATTCGTAGATTTGTCTTGGGACTTGGAGGAAAGTTTAAGGATAAGATGTTAGGCACACCGTACCGAAGTTTTGTTGAGGCAGTATCTTATGCCATGGACATTGAGTCGGACTCACCTGCCGGATTTCACCCTAGGGATCCTGGTGGCCCTAGCCAGAGTCCATCTAAGAGGGCTACTTCCACATCCAGTTCTGGTTCTTCAGTTGGTAGTGGAAAGAACAGTGGTTCCAGGTCGAGGTCCCGTACTAGATTCAGGGGACGTGTCAGGAGATTCTCTCTGGGTCAGTTTAGTGGACAACAGTCTGGGCAGCTTGAGAGGTCCAAGAGTTATCATGGTGGTTCGAGTGGGGCTTCGACTATGGGATGTTTTATGTGTGGTCAGCAGGACCACTTCAGGAGAGACTGCCCTCTTTTGACTCAGGGAGCCATATCTACCCCCACTCAGACTGTTGGTCAGTCCTCTGTTGGCGGGTCAACTAGCGGTGCCGCACTAGTTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04011 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
HJURP_C SRF-TF

Protein Analysis

344

Amino Acids

38.2

Weight (kDa)

9.73

Isoelectric Point (pI)

55.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 55 - 213 1.2e-07 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 91 - 186 8e-18 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 658
Acc36I ACCTGC 1 cut(s) 658
AccB1I GGYRCC 1 cut(s) 1016
AciI CCGC 8 cut(s) 71, 183, 205, 275, 297, 1002, 1014, 1020
AclWI GGATC 2 cut(s) 665, 678
AcsI RAATTY 1 cut(s) 268
AcuI CTGAAG 2 cut(s) 717, 910
AcvI CACGTG 1 cut(s) 23
AdeI CACNNNGTG 1 cut(s) 502
AfaI GTAC 6 cut(s) 127, 279, 389, 520, 596, 778
AfeI AGCGCT 1 cut(s) 111
AfiI CCNNNNNNNGG 3 cut(s) 253, 306, 768
AflIII ACRYGT 1 cut(s) 793
AgsI TTSAA 1 cut(s) 367
AhdI GACNNNNNGTC 2 cut(s) 637, 984
AhlI ACTAGT 1 cut(s) 1024
AjiI CACGTC 1 cut(s) 794
AjnI CCWGG 2 cut(s) 673, 761
AjuI GAANNNNNNNTTGG 2 cut(s) 254, 286
AleI CACNNNNGTG 1 cut(s) 205
AloI GAACNNNNNNTCC 2 cut(s) 743, 775
AluBI AGCT 1 cut(s) 844
AluI AGCT 1 cut(s) 844
Alw26I GTCTC 1 cut(s) 927
AlwI GGATC 2 cut(s) 665, 678
Ama87I CYCGRG 1 cut(s) 116
Aor51HI AGCGCT 1 cut(s) 111
AoxI GGCC 2 cut(s) 343, 679
ApeKI GCWGC 3 cut(s) 104, 107, 841
ApoI RAATTY 1 cut(s) 268
AspA2I CCTAGG 1 cut(s) 665
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 7 cut(s) 244, 344, 421, 680, 771, 852, 919
AsuC2I CCSGG 2 cut(s) 117, 118
AsuHPI GGTGA 4 cut(s) 180, 488, 639, 653
AvaI CYCGRG 1 cut(s) 116
AvaII GGWCC 5 cut(s) 244, 421, 771, 852, 919
AvrII CCTAGG 1 cut(s) 665
BaeI ACNNNNGTAYC 2 cut(s) 379, 412
BamHI GGATCC 1 cut(s) 670
BanI GGYRCC 1 cut(s) 1016
BanII GRGCYC 1 cut(s) 166
BbrPI CACGTG 1 cut(s) 23
BbvI GCAGC 3 cut(s) 91, 119, 853
BccI CCATC 2 cut(s) 214, 703
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 2 cut(s) 675, 763
BciVI GTATCC 2 cut(s) 67, 286
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 2 cut(s) 117, 118
BcoDI GTCTC 1 cut(s) 927
BcuI ACTAGT 1 cut(s) 1024
BfaI CTAG 7 cut(s) 17, 150, 666, 684, 780, 1011, 1025
BfmI CTRYAG 1 cut(s) 105
BfoI RGCGCY 1 cut(s) 113
BfuAI ACCTGC 1 cut(s) 658
BfuI GTATCC 2 cut(s) 67, 286
BisI GCNGC 5 cut(s) 105, 108, 183, 842, 1020
BlnI CCTAGG 1 cut(s) 665
BlsI GCNGC 5 cut(s) 106, 109, 184, 843, 1021
Bme1390I CCNGG 4 cut(s) 117, 118, 675, 763
Bme18I GGWCC 5 cut(s) 244, 421, 771, 852, 919
BmeRI GACNNNNNGTC 2 cut(s) 637, 984
BmeT110I CYCGRG 1 cut(s) 116
BmgBI CACGTC 1 cut(s) 794
BmgT120I GGNCC 7 cut(s) 244, 344, 421, 680, 771, 852, 919
BmiI GGNNCC 5 cut(s) 672, 760, 773, 958, 1018
BmrFI CCNGG 4 cut(s) 117, 118, 675, 763
BmsI GCATC 2 cut(s) 388, 405
BoxI GACNNNNGTC 1 cut(s) 832
BplI GAGNNNNNCTC 6 cut(s) 470, 502, 629, 661, 793, 825
BpuEI CTTGAG 3 cut(s) 308, 451, 866
BpuMI CCSGG 2 cut(s) 117, 118
BsaAI YACGTR 2 cut(s) 23, 59
BsaJI CCNNGG 5 cut(s) 115, 116, 489, 627, 665
BsaWI WCCGGW 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 306, 768
Bse1I ACTGG 3 cut(s) 319, 424, 720
BseBI CCWGG 2 cut(s) 675, 763
BseDI CCNNGG 5 cut(s) 115, 116, 489, 627, 665
BseGI GGATG 4 cut(s) 225, 420, 716, 902
BseLI CCNNNNNNNGG 3 cut(s) 253, 306, 768
BseMII CTCAG 4 cut(s) 179, 513, 965, 989
BseNI ACTGG 3 cut(s) 319, 424, 720
BseXI GCAGC 3 cut(s) 91, 119, 853
BshFI GGCC 2 cut(s) 345, 681
BshNI GGYRCC 1 cut(s) 1016
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 3 cut(s) 35, 117, 654
BslFI GGGAC 3 cut(s) 567, 757, 804
BslI CCNNNNNNNGG 3 cut(s) 253, 306, 768
BsmAI GTCTC 1 cut(s) 927
BsmFI GGGAC 3 cut(s) 567, 757, 804
BsnI GGCC 2 cut(s) 345, 681
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 2 cut(s) 451, 670
Bsp19I CCATGG 1 cut(s) 627
BspACI CCGC 8 cut(s) 71, 183, 205, 275, 297, 1002, 1014, 1020
BspANI GGCC 2 cut(s) 345, 681
BspCNI CTCAG 4 cut(s) 178, 514, 964, 988
BspLI GGNNCC 5 cut(s) 672, 760, 773, 958, 1018
BspMAI CTGCAG 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 658
BspPI GGATC 2 cut(s) 665, 678
BspT107I GGYRCC 1 cut(s) 1016
BsrI ACTGG 3 cut(s) 319, 424, 720
BssECI CCNNGG 5 cut(s) 115, 116, 489, 627, 665
BssMI GATC 2 cut(s) 451, 670
BssT1I CCWWGG 3 cut(s) 489, 627, 665
Bst2UI CCWGG 2 cut(s) 675, 763
Bst4CI ACNGT 7 cut(s) 139, 282, 387, 594, 755, 834, 982
Bst6I CTCTTC 1 cut(s) 437
BstBAI YACGTR 2 cut(s) 23, 59
BstC8I GCNNGC 1 cut(s) 343
BstDEI CTNAG 5 cut(s) 165, 522, 699, 951, 975
BstDSI CCRYGG 1 cut(s) 627
BstENI CCTNNNNNAGG 1 cut(s) 251
BstF5I GGATG 4 cut(s) 225, 420, 716, 902
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 2 cut(s) 454, 673
BstMAI GTCTC 1 cut(s) 927
BstMBI GATC 2 cut(s) 451, 670
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 2 cut(s) 675, 763
BstPAI GACNNNNGTC 1 cut(s) 832
BstSCI CCNGG 4 cut(s) 115, 116, 673, 761
BstSFI CTRYAG 1 cut(s) 105
BstSNI TACGTA 1 cut(s) 59
BstV1I GCAGC 3 cut(s) 91, 119, 853
BstX2I RGATCY 1 cut(s) 670
BstXI CCANNNNNNTGG 1 cut(s) 380
BstYI RGATCY 1 cut(s) 670
BsuI GTATCC 2 cut(s) 67, 286
BsuRI GGCC 2 cut(s) 345, 681
BtgI CCRYGG 1 cut(s) 627
BtrI CACGTC 1 cut(s) 794
BtsCI GGATG 4 cut(s) 225, 420, 716, 902
BtsIMutI CAGTG 2 cut(s) 465, 760
BveI ACCTGC 1 cut(s) 658
Cac8I GCNNGC 1 cut(s) 343
CfoI GCGC 1 cut(s) 112
Cfr13I GGNCC 7 cut(s) 244, 344, 421, 680, 771, 852, 919
Cfr9I CCCGGG 1 cut(s) 116
Csp6I GTAC 6 cut(s) 126, 278, 388, 519, 595, 777
CviAII CATG 5 cut(s) 158, 354, 500, 628, 866
CviQI GTAC 6 cut(s) 126, 278, 388, 519, 595, 777
DdeI CTNAG 5 cut(s) 165, 522, 699, 951, 975
DpnI GATC 2 cut(s) 453, 672
DpnII GATC 2 cut(s) 451, 670
DraIII CACNNNGTG 1 cut(s) 502
DriI GACNNNNNGTC 2 cut(s) 637, 984
Eam1104I CTCTTC 1 cut(s) 437
Eam1105I GACNNNNNGTC 2 cut(s) 637, 984
EarI CTCTTC 1 cut(s) 437
Eco105I TACGTA 1 cut(s) 59
Eco130I CCWWGG 3 cut(s) 489, 627, 665
Eco24I GRGCYC 1 cut(s) 166
Eco47I GGWCC 5 cut(s) 244, 421, 771, 852, 919
Eco47III AGCGCT 1 cut(s) 111
Eco57I CTGAAG 2 cut(s) 717, 910
Eco72I CACGTG 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 116
EcoNI CCTNNNNNAGG 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 771
EcoRII CCWGG 2 cut(s) 673, 761
EcoT14I CCWWGG 3 cut(s) 489, 627, 665
EcoT38I GRGCYC 1 cut(s) 166
ErhI CCWWGG 3 cut(s) 489, 627, 665
FaeI CATG 5 cut(s) 161, 357, 503, 631, 869
FaqI GGGAC 3 cut(s) 567, 757, 804
FatI CATG 5 cut(s) 157, 353, 499, 627, 865
FauI CCCGC 1 cut(s) 995
FauNDI CATATG 1 cut(s) 240
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 5 cut(s) 105, 108, 183, 842, 1020
FokI GGATG 4 cut(s) 232, 427, 703, 909
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 5 cut(s) 105, 108, 183, 842, 1020
FspBI CTAG 7 cut(s) 17, 150, 666, 684, 780, 1011, 1025
GlaI GCGC 1 cut(s) 111
GluI GCNGC 5 cut(s) 105, 108, 183, 842, 1020
HaeII RGCGCY 1 cut(s) 113
HaeIII GGCC 2 cut(s) 345, 681
HapII CCGG 3 cut(s) 35, 117, 654
HhaI GCGC 1 cut(s) 112
Hin1II CATG 5 cut(s) 161, 357, 503, 631, 869
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HincII GTYRAC 1 cut(s) 1008
HindII GTYRAC 1 cut(s) 1008
HinfI GANTC 7 cut(s) 535, 638, 644, 691, 783, 804, 949
HpaII CCGG 3 cut(s) 35, 117, 654
HphI GGTGA 4 cut(s) 180, 488, 639, 653
Hpy166II GTNNAC 3 cut(s) 312, 827, 1008
Hpy188I TCNGA 4 cut(s) 168, 414, 643, 978
Hpy188III TCNNGA 5 cut(s) 251, 367, 430, 799, 928
Hpy8I GTNNAC 3 cut(s) 312, 827, 1008
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 7 cut(s) 139, 282, 387, 594, 755, 834, 982
HpyCH4IV ACGT 3 cut(s) 22, 58, 793
HpyCH4V TGCA 2 cut(s) 107, 418
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 5 cut(s) 165, 522, 699, 951, 975
HpySE526I ACGT 3 cut(s) 22, 58, 793
Hsp92II CATG 5 cut(s) 161, 357, 503, 631, 869
HspAI GCGC 1 cut(s) 110
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 2 cut(s) 451, 670
LmnI GCTCC 3 cut(s) 117, 181, 956
Lsp1109I GCAGC 3 cut(s) 91, 119, 853
LweI GCATC 2 cut(s) 388, 405
MaeI CTAG 7 cut(s) 17, 150, 666, 684, 780, 1011, 1025
MaeII ACGT 3 cut(s) 22, 58, 793
MalI GATC 2 cut(s) 453, 672
MboI GATC 2 cut(s) 451, 670
MboII GAAGA 3 cut(s) 56, 454, 723
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 1 cut(s) 268
MlyI GAGTC 4 cut(s) 638, 647, 700, 943
MmeI TCCRAC 2 cut(s) 444, 621
MseI TTAA 2 cut(s) 408, 570
MslI CAYNNNNRTG 2 cut(s) 205, 378
MspA1I CMGCKG 1 cut(s) 205
MspI CCGG 3 cut(s) 35, 117, 654
MspR9I CCNGG 4 cut(s) 117, 118, 675, 763
MvaI CCWGG 2 cut(s) 675, 763
MwoI GCNNNNNNNGC 1 cut(s) 182
NciI CCSGG 2 cut(s) 117, 118
NcoI CCATGG 1 cut(s) 627
NdeI CATATG 1 cut(s) 240
NdeII GATC 2 cut(s) 451, 670
NlaIII CATG 5 cut(s) 161, 357, 503, 631, 869
NlaIV GGNNCC 5 cut(s) 672, 760, 773, 958, 1018
OliI CACNNNNGTG 1 cut(s) 205
PaqCI CACCTGC 1 cut(s) 658
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PfeI GAWTC 3 cut(s) 535, 783, 804
PkrI GCNGC 5 cut(s) 106, 109, 184, 843, 1021
PleI GAGTC 4 cut(s) 638, 646, 699, 943
PmaCI CACGTG 1 cut(s) 23
PmlI CACGTG 1 cut(s) 23
PpsI GAGTC 4 cut(s) 638, 646, 699, 943
Ppu21I YACGTR 2 cut(s) 23, 59
PpuMI RGGWCCY 1 cut(s) 771
PshAI GACNNNNGTC 1 cut(s) 832
Psp5II RGGWCCY 1 cut(s) 771
Psp6I CCWGG 2 cut(s) 673, 761
PspCI CACGTG 1 cut(s) 23
PspGI CCWGG 2 cut(s) 673, 761
PspN4I GGNNCC 5 cut(s) 672, 760, 773, 958, 1018
PspPI GGNCC 7 cut(s) 244, 344, 421, 680, 771, 852, 919
PspPPI RGGWCCY 1 cut(s) 771
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 670
RsaI GTAC 6 cut(s) 127, 279, 389, 520, 596, 778
RsaNI GTAC 6 cut(s) 126, 278, 388, 519, 595, 777
RseI CAYNNNNRTG 2 cut(s) 205, 378
SaqAI TTAA 2 cut(s) 408, 570
SatI GCNGC 5 cut(s) 105, 108, 183, 842, 1020
Sau3AI GATC 2 cut(s) 451, 670
Sau96I GGNCC 7 cut(s) 244, 344, 421, 680, 771, 852, 919
SchI GAGTC 4 cut(s) 638, 647, 700, 943
ScrFI CCNGG 4 cut(s) 117, 118, 675, 763
SduI GDGCHC 1 cut(s) 166
SfaNI GCATC 2 cut(s) 388, 405
SfcI CTRYAG 1 cut(s) 105
SinI GGWCC 5 cut(s) 244, 421, 771, 852, 919
SmaI CCCGGG 1 cut(s) 118
SmiMI CAYNNNNRTG 2 cut(s) 205, 378
SmlI CTYRAG 3 cut(s) 287, 430, 845
SmoI CTYRAG 3 cut(s) 287, 430, 845
SnaBI TACGTA 1 cut(s) 59
SpeI ACTAGT 1 cut(s) 1024
Sse9I AATT 1 cut(s) 268
SsiI CCGC 8 cut(s) 71, 183, 205, 275, 297, 1002, 1014, 1020
SspMI CTAG 7 cut(s) 17, 150, 666, 684, 780, 1011, 1025
StyD4I CCNGG 4 cut(s) 115, 116, 673, 761
StyI CCWWGG 3 cut(s) 489, 627, 665
TaaI ACNGT 7 cut(s) 139, 282, 387, 594, 755, 834, 982
TaiI ACGT 3 cut(s) 25, 61, 796
TaqI TCGA 3 cut(s) 767, 875, 887
TasI AATT 1 cut(s) 268
TauI GCSGC 2 cut(s) 185, 1022
TfiI GAWTC 3 cut(s) 535, 783, 804
Tru1I TTAA 2 cut(s) 408, 570
Tru9I TTAA 2 cut(s) 408, 570
TscAI CASTG 2 cut(s) 465, 760
TseI GCWGC 3 cut(s) 104, 107, 841
TspMI CCCGGG 1 cut(s) 116
TspRI CASTG 2 cut(s) 465, 760
VpaK11BI GGWCC 5 cut(s) 244, 421, 771, 852, 919
XagI CCTNNNNNAGG 1 cut(s) 251
XapI RAATTY 1 cut(s) 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
XmaI CCCGGG 1 cut(s) 116
XmaJI CCTAGG 1 cut(s) 665
XspI CTAG 7 cut(s) 17, 150, 666, 684, 780, 1011, 1025
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.