FvH4_5g25322

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000094
Physical Location & Seq
Forward (+)
16835814 .. 16838921
3108 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25322.t1

Sequence Viewer

Length: 2913 bp
ATGCCTCCTAGGCGCCCACGGCAACCCCGTGTGGCTACTTCGACCAATGCCGATGAAGGCAATGAGGTCAGGGGACTGGTTGATGATATTGGGAATATGCTGAGGGATGTCATGGATCGAGCTCCACAACCTCATTCTGTGAAAAGGAGAGAAGTTTTTGAAGCTGGAGCCAGAGAGTTCAAGGGTGCCAAGGGACCCCTTGATGCTTATACTTGGGTGGACAAAATGGAAAAAGCTTTTGCCAGCTCAGAGTTGCCAGATGAAAAGAAGGTGAAGATGGCAGTAACTTTCCTGGATGATTCAGCACATCACTGGTGGTCGCTTGCCAGCAGGAATGTTGAGGATGCGCTGAATATGTCGTGGGAACAGTTTAAGACTCTTTTCTTGGGGCAATATTTCAGTCCTGCCCATCGCAGCAGAATTCAGTCAGATTTCCTGAATATAAAGAAGAGGGATGATGAAGGCGTTATAGAGTTCCAAGAGAGATTCACTTCCCTGAGCTATCATGTGTCGTATTTGGTTCCTGATGAGAGGACCAGGATGGAGATGTTCATTGGGGCACTTGGTGGAGTGTTTGCGGATAAGATGACGGGTGGTCCATCCAAGAAAGCTGTTTCATCATCCGCTTCAGGTTCATCAGCTGGTAGTGGCAGTAGTGGGGGATCAGGTTCTCCTTCTCGGTTCAGGGTTAGAGGACGTCACAGGAGACCTGCTAGGAGCCAGTTGGGTAGGCAGCAGTCCGGGCAGTATAGTTCGGGTGGCAGTTTCCATGGTGGGACATCTGGTAGTCGGACTTTTTCTTATGGGCAGCAGCAGCAGTTTTCTGGGTGCTTTGAGTGTGGTAGTCATGACCACTTCAGGAGAGATTGCCCATTGTTGGCTCAGAGGACCACTCCCACCCCTACTCAGCCTATTGGTCAGTCTTCAGCTGGAGGCTCTAGTAGTGGTGCCCAGGGCAGTGCTTCGGTCAGAGGTGGCTCTCAGCGGGGAAGTGGTCAGCGTGGACGTCCTATGACTCGCGCTAGACTGCATGCTATGACCCAGCAGGAGGGTCGTACTTCTCCAGATGTTATCATTGGTACGTTATTGATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACACATTCATTCATGTCTAGTAGATTTGCCCTCCATGCCAATGTGCCATCCTCGTCTCTTCCAGGCGAGTGGCATGTGTCTCTACCCTCCGGTGAGGTGATGAGAATAAATTGGGTATTTAGTGGCTGTGAAGTCTTAGTGGAAGGAGTTAATTTCGAGGCTGATTTAATTCCTTTAGATATAGTGGAATTTGATGTGATCTTGGGAATGGACTTTTTGGAAGCATATAGAGCTATGGTAGATTGTTTTCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTTTGAGGTTGTTTTCCAAGGGGAAAGAGATGTTATTTTTAGTTGCATAATTTCCGCTGTTGCTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTCTAGCTCATGTGGTGGATACAAGTATGGGAGTTGTGGGATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGATATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCGATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAACTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCCAGTGTTGTTTGTCAAGAAGAAAGATGACACCATGAGACTATGCATCGATTATAGGAAGTTGAATCAGGTCACAGTAAAAAATAAATATCCCTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTATCATCAGTTGCGGATCCGAGAGGGTGACATAGCCAAGACTGCTTTCCGATCACGTTATGGTCATTATGAATTTGTGGTGATGCCTTTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATACCTTGATCGTTTCGTGATCGTATTCATAGATGACATTTTGGTTTACTCAAGAAGTAAGAAAGAGCATGCCAAGCATCTAAGAATAATATTGCGGACTTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTTGATAAAGTGGGGTTCTTGGGTCATGTGATTTCGGCAGAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGCTACTCCTCTCACAAAGTTGACCAGAAAAGGGGTTAAGTATGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCGGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAAAGAGAGCTTAATATGAGACAGAGAAGATGGATGGAGTTAATCAGTGATTATGATTGCACTATCGAGTATCATCCTGGAAAAGCTAATGTGGAGTGGATTTGTCAGTGGATGAGGTTGGTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

971

Amino Acids

109.02

Weight (kDa)

8.99

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 92 - 187 7.2e-15 Retrotransposon gag protein
RVP_2 PF08284 338 - 468 1.3e-33 Retroviral aspartyl protease
RVT_1 PF00078 599 - 759 1.4e-35 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 822 - 916 2.5e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 848 - 946 7.1e-33 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 700, 1009
Acc36I ACCTGC 2 cut(s) 718, 2369
AccB1I GGYRCC 5 cut(s) 12, 185, 947, 1678, 1913
AccB7I CCANNNNNTGG 1 cut(s) 2311
AccII CGCG 2 cut(s) 1020, 2060
AccIII TCCGGA 2 cut(s) 1582, 2536
AclWI GGATC 9 cut(s) 123, 670, 1115, 1892, 1960, 1973, 2079, 2294, 2307
AcsI RAATTY 3 cut(s) 420, 1319, 2021
AcuI CTGAAG 3 cut(s) 612, 841, 909
AcyI GRCGYC 4 cut(s) 13, 697, 1006, 1679
AdeI CACNNNGTG 1 cut(s) 566
AfaI GTAC 2 cut(s) 1057, 1081
AfiI CCNNNNNNNGG 6 cut(s) 877, 1048, 1881, 2311, 2448, 2654
AhdI GACNNNNNGTC 1 cut(s) 594
AjiI CACGTC 1 cut(s) 2582
AjnI CCWGG 6 cut(s) 291, 536, 951, 1192, 1606, 2860
AjuI GAANNNNNNNTTGG 2 cut(s) 1979, 2011
AleI CACNNNNGTG 1 cut(s) 2345
Alw21I GWGCWC 3 cut(s) 124, 1783, 2521
Alw26I GTCTC 7 cut(s) 700, 1191, 1215, 1773, 1813, 2710, 2797
AlwI GGATC 9 cut(s) 123, 670, 1115, 1892, 1960, 1973, 2079, 2294, 2307
Aor13HI TCCGGA 2 cut(s) 1582, 2536
AoxI GGCC 1 cut(s) 1757
ApeKI GCWGC 8 cut(s) 414, 733, 808, 811, 814, 1475, 2605, 2687
ApoI RAATTY 3 cut(s) 420, 1319, 2021
Asp700I GAANNNNTTC 2 cut(s) 1560, 1650
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 5 cut(s) 15, 349, 1022, 1681, 2394
AspS9I GGNCC 4 cut(s) 194, 534, 596, 888
AsuC2I CCSGG 3 cut(s) 742, 1125, 1656
AsuHPI GGTGA 5 cut(s) 283, 1235, 1240, 1988, 2041
AsuII TTCGAA 1 cut(s) 1399
AvaII GGWCC 4 cut(s) 194, 534, 596, 888
AvrII CCTAGG 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 1596
BaeGI GKGCMC 2 cut(s) 562, 952
BamHI GGATCC 2 cut(s) 1965, 2299
BanI GGYRCC 5 cut(s) 12, 185, 947, 1678, 1913
BanII GRGCYC 1 cut(s) 124
BarI GAAGNNNNNNTAC 2 cut(s) 1380, 1412
BbsI GAAGAC 4 cut(s) 915, 1724, 2341, 2759
Bbv12I GWGCWC 3 cut(s) 124, 1783, 2521
BbvCI CCTCAGC 1 cut(s) 101
BbvI GCAGC 8 cut(s) 426, 745, 820, 823, 826, 1462, 2617, 2699
BccI CCATC 8 cut(s) 271, 417, 535, 607, 1186, 1403, 2808, 2812
BceAI ACGGC 1 cut(s) 35
BcgI CGANNNNNNTGC 4 cut(s) 1034, 1068, 2594, 2628
BciT130I CCWGG 6 cut(s) 293, 538, 953, 1194, 1608, 2862
BciVI GTATCC 1 cut(s) 1522
BclI TGATCA 1 cut(s) 1900
BcnI CCSGG 3 cut(s) 742, 1125, 1656
BcoDI GTCTC 7 cut(s) 700, 1191, 1215, 1773, 1813, 2710, 2797
BfmI CTRYAG 3 cut(s) 1566, 1641, 1727
BfoI RGCGCY 3 cut(s) 16, 1682, 2395
BfuAI ACCTGC 2 cut(s) 718, 2369
BfuI GTATCC 1 cut(s) 1522
BglI GCCNNNNNGGC 1 cut(s) 10
BlnI CCTAGG 1 cut(s) 8
Bme1390I CCNGG 9 cut(s) 293, 538, 742, 953, 1125, 1194, 1608, 1656, 2862
Bme18I GGWCC 4 cut(s) 194, 534, 596, 888
BmeRI GACNNNNNGTC 1 cut(s) 594
BmgBI CACGTC 1 cut(s) 2582
BmgT120I GGNCC 4 cut(s) 194, 534, 596, 888
BmrFI CCNGG 9 cut(s) 293, 538, 742, 953, 1125, 1194, 1608, 1656, 2862
BmsI GCATC 7 cut(s) 193, 334, 1836, 2022, 2182, 2560, 2592
BpiI GAAGAC 4 cut(s) 915, 1724, 2341, 2759
BplI GAGNNNNNCTC 2 cut(s) 877, 909
BpmI CTGGAG 6 cut(s) 186, 951, 1047, 1680, 1767, 2699
Bpu10I CCTNAGC 2 cut(s) 101, 497
Bpu14I TTCGAA 1 cut(s) 1399
BpuEI CTTGAG 2 cut(s) 2131, 2690
BpuMI CCSGG 3 cut(s) 742, 1125, 1656
Bsa29I ATCGAT 2 cut(s) 1830, 1887
BsaHI GRCGYC 4 cut(s) 13, 697, 1006, 1679
BsaI GGTCTC 1 cut(s) 700
BsaWI WCCGGW 3 cut(s) 1220, 1582, 2536
BsaXI ACNNNNNCTCC 6 cut(s) 2280, 2310, 2503, 2533, 2541, 2571
Bsc4I CCNNNNNNNGG 6 cut(s) 877, 1048, 1881, 2311, 2448, 2654
Bse1I ACTGG 4 cut(s) 81, 317, 721, 1784
Bse21I CCTNAGG 1 cut(s) 1596
Bse3DI GCAATG 1 cut(s) 67
BseAI TCCGGA 2 cut(s) 1582, 2536
BseBI CCWGG 6 cut(s) 293, 538, 953, 1194, 1608, 2862
BseCI ATCGAT 2 cut(s) 1830, 1887
BseLI CCNNNNNNNGG 6 cut(s) 877, 1048, 1881, 2311, 2448, 2654
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 8 cut(s) 92, 261, 488, 896, 920, 995, 1587, 1688
BseNI ACTGG 4 cut(s) 81, 317, 721, 1784
BseRI GAGGAG 2 cut(s) 1613, 2415
BseSI GKGCMC 2 cut(s) 562, 952
BseXI GCAGC 8 cut(s) 426, 745, 820, 823, 826, 1462, 2617, 2699
BseYI CCCAGC 1 cut(s) 1041
Bsh1236I CGCG 2 cut(s) 1020, 2060
BshFI GGCC 1 cut(s) 1759
BshNI GGYRCC 5 cut(s) 12, 185, 947, 1678, 1913
BshVI ATCGAT 2 cut(s) 1830, 1887
BsiHKAI GWGCWC 3 cut(s) 124, 1783, 2521
BsiSI CCGG 6 cut(s) 741, 1125, 1221, 1583, 1656, 2537
BslFI GGGAC 3 cut(s) 87, 207, 790
BslI CCNNNNNNNGG 6 cut(s) 877, 1048, 1881, 2311, 2448, 2654
BsmAI GTCTC 7 cut(s) 700, 1191, 1215, 1773, 1813, 2710, 2797
BsmBI CGTCTC 1 cut(s) 1191
BsmFI GGGAC 3 cut(s) 87, 207, 790
BsnI GGCC 1 cut(s) 1759
Bso31I GGTCTC 1 cut(s) 700
Bsp119I TTCGAA 1 cut(s) 1399
Bsp1286I GDGCHC 5 cut(s) 124, 562, 952, 1783, 2521
Bsp13I TCCGGA 2 cut(s) 1582, 2536
Bsp19I CCATGG 2 cut(s) 769, 1772
BspANI GGCC 1 cut(s) 1759
BspCNI CTCAG 8 cut(s) 93, 260, 489, 895, 919, 994, 1588, 1687
BspDI ATCGAT 2 cut(s) 1830, 1887
BspEI TCCGGA 2 cut(s) 1582, 2536
BspFNI CGCG 2 cut(s) 1020, 2060
BspHI TCATGA 3 cut(s) 847, 2076, 2671
BspMAI CTGCAG 1 cut(s) 1731
BspMI ACCTGC 2 cut(s) 718, 2369
BspPI GGATC 9 cut(s) 123, 670, 1115, 1892, 1960, 1973, 2079, 2294, 2307
BspT104I TTCGAA 1 cut(s) 1399
BspT107I GGYRCC 5 cut(s) 12, 185, 947, 1678, 1913
BspTNI GGTCTC 1 cut(s) 700
BsrDI GCAATG 1 cut(s) 67
BsrI ACTGG 4 cut(s) 81, 317, 721, 1784
BssNI GRCGYC 4 cut(s) 13, 697, 1006, 1679
BssT1I CCWWGG 5 cut(s) 8, 189, 769, 1429, 1772
Bst2UI CCWGG 6 cut(s) 293, 538, 953, 1194, 1608, 2862
Bst4CI ACNGT 3 cut(s) 369, 1858, 2347
Bst6I CTCTTC 2 cut(s) 443, 1194
BstACI GRCGYC 4 cut(s) 13, 697, 1006, 1679
BstBI TTCGAA 1 cut(s) 1399
BstC8I GCNNGC 8 cut(s) 244, 324, 328, 1032, 1104, 2166, 2480, 2685
BstDSI CCRYGG 4 cut(s) 17, 769, 1772, 2058
BstFNI CGCG 2 cut(s) 1020, 2060
BstH2I RGCGCY 3 cut(s) 16, 1682, 2395
BstHHI GCGC 5 cut(s) 15, 349, 1022, 1681, 2394
BstMAI GTCTC 7 cut(s) 700, 1191, 1215, 1773, 1813, 2710, 2797
BstNI CCWGG 6 cut(s) 293, 538, 953, 1194, 1608, 2862
BstNSI RCATGY 4 cut(s) 1034, 1208, 1768, 2168
BstSCI CCNGG 9 cut(s) 291, 536, 740, 951, 1123, 1192, 1606, 1654, 2860
BstSFI CTRYAG 3 cut(s) 1566, 1641, 1727
BstSLI GKGCMC 2 cut(s) 562, 952
BstUI CGCG 2 cut(s) 1020, 2060
BstV1I GCAGC 8 cut(s) 426, 745, 820, 823, 826, 1462, 2617, 2699
BstV2I GAAGAC 4 cut(s) 915, 1724, 2341, 2759
BstX2I RGATCY 3 cut(s) 1965, 2071, 2299
BstXI CCANNNNNNTGG 1 cut(s) 1200
BstYI RGATCY 3 cut(s) 1965, 2071, 2299
Bsu15I ATCGAT 2 cut(s) 1830, 1887
Bsu36I CCTNAGG 1 cut(s) 1596
BsuI GTATCC 1 cut(s) 1522
BsuRI GGCC 1 cut(s) 1759
BsuTUI ATCGAT 2 cut(s) 1830, 1887
BtgI CCRYGG 4 cut(s) 17, 769, 1772, 2058
BtgZI GCGATG 1 cut(s) 395
BtrI CACGTC 1 cut(s) 2582
BtsI GCAGTG 2 cut(s) 964, 2325
BtsIMutI CAGTG 8 cut(s) 310, 964, 1791, 2325, 2343, 2480, 2836, 2897
BveI ACCTGC 2 cut(s) 718, 2369
Cac8I GCNNGC 8 cut(s) 244, 324, 328, 1032, 1104, 2166, 2480, 2685
CciI TCATGA 3 cut(s) 847, 2076, 2671
CfoI GCGC 5 cut(s) 15, 349, 1022, 1681, 2394
Cfr13I GGNCC 4 cut(s) 194, 534, 596, 888
Cfr42I CCGCGG 1 cut(s) 2061
ClaI ATCGAT 2 cut(s) 1830, 1887
Csp6I GTAC 2 cut(s) 1056, 1080
CviQI GTAC 2 cut(s) 1056, 1080
DinI GGCGCC 2 cut(s) 14, 1680
DraIII CACNNNGTG 1 cut(s) 566
DriI GACNNNNNGTC 1 cut(s) 594
Eam1104I CTCTTC 2 cut(s) 443, 1194
Eam1105I GACNNNNNGTC 1 cut(s) 594
EarI CTCTTC 2 cut(s) 443, 1194
Ecl136II GAGCTC 1 cut(s) 122
Eco130I CCWWGG 5 cut(s) 8, 189, 769, 1429, 1772
Eco24I GRGCYC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 700
Eco47I GGWCC 4 cut(s) 194, 534, 596, 888
Eco53kI GAGCTC 1 cut(s) 122
Eco57I CTGAAG 3 cut(s) 612, 841, 909
Eco81I CCTNAGG 1 cut(s) 1596
EcoICRI GAGCTC 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 6 cut(s) 291, 536, 951, 1192, 1606, 2860
EcoT14I CCWWGG 5 cut(s) 8, 189, 769, 1429, 1772
EcoT22I ATGCAT 1 cut(s) 1829
EcoT38I GRGCYC 1 cut(s) 124
EgeI GGCGCC 2 cut(s) 14, 1680
EheI GGCGCC 2 cut(s) 14, 1680
ErhI CCWWGG 5 cut(s) 8, 189, 769, 1429, 1772
Esp3I CGTCTC 1 cut(s) 1191
FalI AAGNNNNNCTT 2 cut(s) 2492, 2524
FaqI GGGAC 3 cut(s) 87, 207, 790
FauI CCCGC 2 cut(s) 978, 2065
FbaI TGATCA 1 cut(s) 1900
FriOI GRGCYC 1 cut(s) 124
GlaI GCGC 5 cut(s) 14, 348, 1021, 1680, 2393
GsaI CCCAGC 1 cut(s) 1045
GsuI CTGGAG 6 cut(s) 186, 951, 1047, 1680, 1767, 2699
HaeII RGCGCY 3 cut(s) 16, 1682, 2395
HaeIII GGCC 1 cut(s) 1759
HapII CCGG 6 cut(s) 741, 1125, 1221, 1583, 1656, 2537
HhaI GCGC 5 cut(s) 15, 349, 1022, 1681, 2394
Hin1I GRCGYC 4 cut(s) 13, 697, 1006, 1679
Hin6I GCGC 5 cut(s) 13, 347, 1020, 1679, 2392
HinP1I GCGC 5 cut(s) 13, 347, 1020, 1679, 2392
HincII GTYRAC 1 cut(s) 2439
HindII GTYRAC 1 cut(s) 2439
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 8 cut(s) 299, 376, 486, 1015, 1720, 1846, 2356, 2764
HpaII CCGG 6 cut(s) 741, 1125, 1221, 1583, 1656, 2537
HphI GGTGA 5 cut(s) 283, 1235, 1240, 1988, 2041
Hpy166II GTNNAC 5 cut(s) 220, 1004, 2143, 2439, 2781
Hpy8I GTNNAC 5 cut(s) 220, 1004, 2143, 2439, 2781
HpyAV CCTTC 6 cut(s) 50, 262, 455, 684, 1268, 2279
HpyCH4III ACNGT 3 cut(s) 369, 1858, 2347
HpyCH4IV ACGT 5 cut(s) 697, 1006, 1082, 2005, 2581
HpySE526I ACGT 5 cut(s) 697, 1006, 1082, 2005, 2581
Hsp92I GRCGYC 4 cut(s) 13, 697, 1006, 1679
HspAI GCGC 5 cut(s) 13, 347, 1020, 1679, 2392
KasI GGCGCC 2 cut(s) 12, 1678
KflI GGGWCCC 1 cut(s) 194
Kpn2I TCCGGA 2 cut(s) 1582, 2536
Ksp22I TGATCA 1 cut(s) 1900
KspI CCGCGG 1 cut(s) 2061
LmnI GCTCC 9 cut(s) 127, 167, 717, 1127, 1699, 1786, 2524, 2680, 2732
Lsp1109I GCAGC 8 cut(s) 426, 745, 820, 823, 826, 1462, 2617, 2699
LweI GCATC 7 cut(s) 193, 334, 1836, 2022, 2182, 2560, 2592
MaeII ACGT 5 cut(s) 697, 1006, 1082, 2005, 2581
MaeIII GTNAC 5 cut(s) 283, 698, 1852, 1976, 2347
MfeI CAATTG 1 cut(s) 2639
MflI RGATCY 3 cut(s) 1965, 2071, 2299
MhlI GDGCHC 5 cut(s) 124, 562, 952, 1783, 2521
Mly113I GGCGCC 2 cut(s) 13, 1679
MlyI GAGTC 4 cut(s) 370, 1009, 1714, 2773
MmeI TCCRAC 1 cut(s) 770
Mph1103I ATGCAT 1 cut(s) 1829
MroI TCCGGA 2 cut(s) 1582, 2536
MroXI GAANNNNTTC 2 cut(s) 1560, 1650
MseI TTAA 7 cut(s) 372, 1115, 1281, 1298, 2454, 2796, 2825
MslI CAYNNNNRTG 2 cut(s) 1170, 2345
MspA1I CMGCKG 7 cut(s) 641, 929, 985, 1469, 1700, 2060, 2690
MspI CCGG 6 cut(s) 741, 1125, 1221, 1583, 1656, 2537
MspR9I CCNGG 9 cut(s) 293, 538, 742, 953, 1125, 1194, 1608, 1656, 2862
MunI CAATTG 1 cut(s) 2639
MvaI CCWGG 6 cut(s) 293, 538, 953, 1194, 1608, 2862
MvnI CGCG 2 cut(s) 1020, 2060
NarI GGCGCC 2 cut(s) 13, 1679
NciI CCSGG 3 cut(s) 742, 1125, 1656
NcoI CCATGG 2 cut(s) 769, 1772
NmuCI GTSAC 4 cut(s) 698, 1852, 1976, 2347
NsiI ATGCAT 1 cut(s) 1829
NspI RCATGY 4 cut(s) 1034, 1208, 1768, 2168
NspV TTCGAA 1 cut(s) 1399
OliI CACNNNNGTG 1 cut(s) 2345
PaeI GCATGC 2 cut(s) 1034, 2168
PagI TCATGA 3 cut(s) 847, 2076, 2671
PasI CCCWGGG 1 cut(s) 952
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PdmI GAANNNNTTC 2 cut(s) 1560, 1650
PfeI GAWTC 4 cut(s) 299, 486, 1846, 2356
PflFI GACNNNGTC 1 cut(s) 2583
PflMI CCANNNNNTGG 1 cut(s) 2311
PfoI TCCNGGA 4 cut(s) 291, 1123, 1654, 2860
PleI GAGTC 4 cut(s) 370, 1009, 1714, 2772
PluTI GGCGCC 2 cut(s) 16, 1682
PpsI GAGTC 4 cut(s) 370, 1009, 1714, 2772
PpuMI RGGWCCY 1 cut(s) 194
Psp124BI GAGCTC 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 194
Psp6I CCWGG 6 cut(s) 291, 536, 951, 1192, 1606, 2860
PspFI CCCAGC 1 cut(s) 1041
PspGI CCWGG 6 cut(s) 291, 536, 951, 1192, 1606, 2860
PspPI GGNCC 4 cut(s) 194, 534, 596, 888
PspPPI RGGWCCY 1 cut(s) 194
PstI CTGCAG 1 cut(s) 1731
PsuI RGATCY 3 cut(s) 1965, 2071, 2299
PsyI GACNNNGTC 1 cut(s) 2583
PvuII CAGCTG 2 cut(s) 641, 929
RsaI GTAC 2 cut(s) 1057, 1081
RsaNI GTAC 2 cut(s) 1056, 1080
RseI CAYNNNNRTG 2 cut(s) 1170, 2345
SacI GAGCTC 1 cut(s) 124
SacII CCGCGG 1 cut(s) 2061
SaqAI TTAA 7 cut(s) 372, 1115, 1281, 1298, 2454, 2796, 2825
Sau96I GGNCC 4 cut(s) 194, 534, 596, 888
SchI GAGTC 4 cut(s) 370, 1009, 1714, 2773
ScrFI CCNGG 9 cut(s) 293, 538, 742, 953, 1125, 1194, 1608, 1656, 2862
SduI GDGCHC 5 cut(s) 124, 562, 952, 1783, 2521
SfaNI GCATC 7 cut(s) 193, 334, 1836, 2022, 2182, 2560, 2592
SfcI CTRYAG 3 cut(s) 1566, 1641, 1727
SfoI GGCGCC 2 cut(s) 14, 1680
Sfr303I CCGCGG 1 cut(s) 2061
SfuI TTCGAA 1 cut(s) 1399
SgrBI CCGCGG 1 cut(s) 2061
SinI GGWCC 4 cut(s) 194, 534, 596, 888
SmiMI CAYNNNNRTG 2 cut(s) 1170, 2345
SmlI CTYRAG 2 cut(s) 2146, 2705
SmoI CTYRAG 2 cut(s) 2146, 2705
SphI GCATGC 2 cut(s) 1034, 2168
SspDI GGCGCC 2 cut(s) 12, 1678
SspI AATATT 2 cut(s) 395, 2187
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 9 cut(s) 291, 536, 740, 951, 1123, 1192, 1606, 1654, 2860
StyI CCWWGG 5 cut(s) 8, 189, 769, 1429, 1772
TaaI ACNGT 3 cut(s) 369, 1858, 2347
TaiI ACGT 5 cut(s) 700, 1009, 1085, 2008, 2584
TaqI TCGA 9 cut(s) 41, 118, 1287, 1399, 1830, 1887, 2324, 2614, 2850
TaqII GACCGA 1 cut(s) 955
TauI GCSGC 2 cut(s) 2063, 2650
TfiI GAWTC 4 cut(s) 299, 486, 1846, 2356
Tru1I TTAA 7 cut(s) 372, 1115, 1281, 1298, 2454, 2796, 2825
Tru9I TTAA 7 cut(s) 372, 1115, 1281, 1298, 2454, 2796, 2825
TscAI CASTG 8 cut(s) 317, 964, 1791, 2325, 2350, 2480, 2836, 2897
TseFI GTSAC 4 cut(s) 698, 1852, 1976, 2347
TseI GCWGC 8 cut(s) 414, 733, 808, 811, 814, 1475, 2605, 2687
Tsp45I GTSAC 4 cut(s) 698, 1852, 1976, 2347
TspGWI ACGGA 1 cut(s) 2366
TspRI CASTG 8 cut(s) 317, 964, 1791, 2325, 2350, 2480, 2836, 2897
Tth111I GACNNNGTC 1 cut(s) 2583
Van91I CCANNNNNTGG 1 cut(s) 2311
VpaK11BI GGWCC 4 cut(s) 194, 534, 596, 888
XapI RAATTY 3 cut(s) 420, 1319, 2021
XbaI TCTAGA 1 cut(s) 2576
XceI RCATGY 4 cut(s) 1034, 1208, 1768, 2168
XmaJI CCTAGG 1 cut(s) 8
XmnI GAANNNNTTC 2 cut(s) 1560, 1650
ZraI GACGTC 2 cut(s) 698, 1007
Zsp2I ATGCAT 1 cut(s) 1829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.