FvH4_5g03402

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000094
Physical Location & Seq
Reverse (-)
2033136 .. 2036063
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03402.t1

Sequence Viewer

Length: 2928 bp
ATGGGAGTTGTGGGATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGATATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCGATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAACTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCCAGTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGGAAGCTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTATCATCAGTTACGGATCCGAGAGGGGGACATAGCCAAGACTGCTTTTCGGTCACGATATGGTCATTATGAATTTGTGGTGATGCCTTTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATATCTTGATCGTTTCGTGATCGTATTCATAGATGATATCTTGGTTTACTCAAGAAGTGAGAAAGAGCATGCCAAGCATCTAAGAATAATATTGCGGACCTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTTGATAAAGTGGGGTTCTTGGGTCATGTGATTTCGGCAGAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGCTACTCCTCTCACAAAGTTGACCAGAAAAGGGGTTAAGTTTGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAAAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGATTATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCAGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAGAGAGAGCTTAATATGAGACAGAGAAGATGGATGGAGTTAATCAGTGATTATGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTGTCAGTGGATAAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATTCTTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGAGACTCTATTGTTTAAAAATCGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCGTAGCTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCAAGGCTGAAAGGCAGAAGCCTTCAGGATTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGCTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTGGATAAATTGGCGGAGCTCTATGTGAATGAAATTGTGAGGCTTCACGGTGTTCCTGAATCAATAGTGTCAGATCGGGATCCTCGATTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGTTCAGAGGTAGTTGGGATAAGAACCTATCTTTGATGGAATTTGCCTATAATAATAGCTATCATTCTAGCATTGGTATGGCGCCCTTTGAGGCTCTTTATGGGAGGCAGTGTCGCACGCCTTTGTGTTGGAATGAAGTAGGGGAAAAAGAGCTTTGTGGCCCAGAGTTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAAGACTGCTCAGAGTAGGCAGAAAAGTTATGCGGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTGGGTGTTCCTGAAATTATCTCCTTGGAAAGGGATTGTGCGTTTCGGTAAGCGTGGGAAGCTTAGCCCGAGGTATATTGGCCCTTATGAGGTTATAGAGCGAGTTGGCTCACTTGCTTATCGATTAGCCTTGCCTCCAGAGTTAGCTAGGATACATAAGGTGTTTCATGTATCCATGCTTCGCAAGTATATTGCCGATCCTTCTCATGTGCTGCAAGAGCAGCCGATCAGTTTGACGAGAGATTTGACCTATGAAGAGGAACCGGTTCAGATTCTCGACCGAAAGGAGCAAGTGCTTAGGAACAAGACAATCCCGCTTGTCAAGGTGCTGTGGAGAAGTCATCAAGTAGAAGAAGCTACTTGGGAATCAGAGGAGCAAATGATGCAGCAGTATCCGTATCTCTTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

976

Amino Acids

112.53

Weight (kDa)

9.15

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 87 - 247 4.7e-36 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 310 - 404 4.5e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 337 - 434 9.7e-33 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 549 - 606 4.2e-18 Integrase zinc binding domain
SH3_Tf2-1 PF24626 838 - 902 4.1e-27 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 833
Acc65I GGTACC 1 cut(s) 2129
AccB1I GGYRCC 5 cut(s) 142, 275, 377, 2129, 2311
AccB7I CCANNNNNTGG 1 cut(s) 775
AccII CGCG 1 cut(s) 524
AccIII TCCGGA 2 cut(s) 46, 1000
AclWI GGATC 9 cut(s) 356, 424, 437, 543, 758, 771, 2075, 2088, 2708
AcoI YGGCCR 1 cut(s) 1751
AcsI RAATTY 4 cut(s) 485, 2099, 2270, 2501
AcuI CTGAAG 3 cut(s) 1818, 2099, 2128
AcyI GRCGYC 2 cut(s) 143, 2312
AfaI GTAC 2 cut(s) 1915, 2131
AfiI CCNNNNNNNGG 7 cut(s) 439, 775, 912, 1118, 1923, 2546, 2605
AgeI ACCGGT 1 cut(s) 2779
AjiI CACGTC 1 cut(s) 1046
AjnI CCWGG 2 cut(s) 70, 1324
AjuI GAANNNNNNNTTGG 2 cut(s) 1985, 2017
AleI CACNNNNGTG 1 cut(s) 809
Alw21I GWGCWC 4 cut(s) 247, 985, 2022, 2113
Alw26I GTCTC 5 cut(s) 237, 277, 1174, 1261, 1598
AlwI GGATC 9 cut(s) 356, 424, 437, 543, 758, 771, 2075, 2088, 2708
Ama87I CYCGRG 1 cut(s) 2584
Aor13HI TCCGGA 2 cut(s) 46, 1000
AoxI GGCC 5 cut(s) 221, 1487, 1751, 2389, 2596
ApeKI GCWGC 9 cut(s) 1069, 1151, 1574, 1697, 1775, 2120, 2728, 2737, 2902
ApoI RAATTY 4 cut(s) 485, 2099, 2270, 2501
ArsI GACNNNNNNTTYG 2 cut(s) 2743, 2775
AsiGI ACCGGT 1 cut(s) 2779
Asp700I GAANNNNTTC 3 cut(s) 24, 114, 2781
Asp718I GGTACC 1 cut(s) 2129
AspLEI GCGC 3 cut(s) 145, 858, 2314
AspS9I GGNCC 4 cut(s) 657, 1876, 2390, 2597
AsuC2I CCSGG 2 cut(s) 120, 1707
AsuHPI GGTGA 5 cut(s) 505, 1876, 1951, 1954, 2525
AsuII TTCGAA 1 cut(s) 1562
AvaI CYCGRG 1 cut(s) 2584
AvaII GGWCC 2 cut(s) 657, 1876
AxyI CCTNAGG 1 cut(s) 60
BalI TGGCCA 1 cut(s) 1753
BamHI GGATCC 3 cut(s) 429, 763, 2080
BanI GGYRCC 5 cut(s) 142, 275, 377, 2129, 2311
BanII GRGCYC 2 cut(s) 2022, 2113
BarI GAAGNNNNNNTAC 2 cut(s) 2679, 2711
BbsI GAAGAC 3 cut(s) 188, 805, 1223
Bbv12I GWGCWC 4 cut(s) 247, 985, 2022, 2113
BbvI GCAGC 9 cut(s) 1081, 1163, 1586, 1684, 1787, 2132, 2715, 2749, 2914
BccI CCATC 8 cut(s) 266, 1272, 1276, 1387, 1543, 1916, 2165, 2260
BceAI ACGGC 1 cut(s) 1834
BcgI CGANNNNNNTGC 2 cut(s) 1058, 1092
BciT130I CCWGG 2 cut(s) 72, 1326
BciVI GTATCC 3 cut(s) 2661, 2698, 2919
BclI TGATCA 1 cut(s) 364
BcnI CCSGG 2 cut(s) 120, 1707
BcoDI GTCTC 5 cut(s) 237, 277, 1174, 1261, 1598
BfaI CTAG 6 cut(s) 225, 1041, 1052, 1098, 2298, 2664
BfmI CTRYAG 4 cut(s) 30, 105, 191, 1428
BfoI RGCGCY 3 cut(s) 146, 859, 2315
BfuAI ACCTGC 1 cut(s) 833
BfuI GTATCC 3 cut(s) 2661, 2698, 2919
BglII AGATCT 1 cut(s) 2494
BlpI GCTNAGC 1 cut(s) 2579
Bme1390I CCNGG 4 cut(s) 72, 120, 1326, 1707
Bme18I GGWCC 2 cut(s) 657, 1876
BmeT110I CYCGRG 1 cut(s) 2584
BmgBI CACGTC 1 cut(s) 1046
BmgT120I GGNCC 4 cut(s) 657, 1876, 2390, 2597
BmrFI CCNGG 4 cut(s) 72, 120, 1326, 1707
BmsI GCATC 6 cut(s) 486, 646, 1024, 1056, 1339, 2889
BpiI GAAGAC 3 cut(s) 188, 805, 1223
BplI GAGNNNNNCTC 2 cut(s) 2427, 2459
BpmI CTGGAG 4 cut(s) 144, 231, 1163, 2637
Bpu10I CCTNAGC 1 cut(s) 2813
Bpu1102I GCTNAGC 1 cut(s) 2579
Bpu14I TTCGAA 1 cut(s) 1562
BpuEI CTTGAG 4 cut(s) 595, 1154, 1865, 2429
BpuMI CCSGG 2 cut(s) 120, 1707
Bsa29I ATCGAT 2 cut(s) 351, 2638
BsaBI GATNNNNATC 1 cut(s) 2079
BsaHI GRCGYC 2 cut(s) 143, 2312
BsaJI CCNNGG 7 cut(s) 236, 344, 522, 660, 1887, 2540, 2585
BsaWI WCCGGW 3 cut(s) 46, 1000, 2779
Bsc4I CCNNNNNNNGG 7 cut(s) 439, 775, 912, 1118, 1923, 2546, 2605
Bse118I RCCGGY 1 cut(s) 2779
Bse1I ACTGG 5 cut(s) 248, 1473, 1490, 1862, 1982
Bse21I CCTNAGG 1 cut(s) 60
Bse8I GATNNNNATC 1 cut(s) 2079
BseAI TCCGGA 2 cut(s) 46, 1000
BseBI CCWGG 2 cut(s) 72, 1326
BseCI ATCGAT 2 cut(s) 351, 2638
BseDI CCNNGG 7 cut(s) 236, 344, 522, 660, 1887, 2540, 2585
BseGI GGATG 7 cut(s) 55, 1009, 1287, 1321, 1702, 2158, 2485
BseJI GATNNNNATC 1 cut(s) 2079
BseLI CCNNNNNNNGG 7 cut(s) 439, 775, 912, 1118, 1923, 2546, 2605
BseMII CTCAG 5 cut(s) 51, 152, 1262, 2177, 2468
BseNI ACTGG 5 cut(s) 248, 1473, 1490, 1862, 1982
BseRI GAGGAG 3 cut(s) 77, 879, 2903
BseXI GCAGC 9 cut(s) 1081, 1163, 1586, 1684, 1787, 2132, 2715, 2749, 2914
BsgI GTGCAG 1 cut(s) 1953
Bsh1236I CGCG 1 cut(s) 524
Bsh1285I CGRYCG 1 cut(s) 2797
BshFI GGCC 5 cut(s) 223, 1489, 1753, 2391, 2598
BshNI GGYRCC 5 cut(s) 142, 275, 377, 2129, 2311
BshTI ACCGGT 1 cut(s) 2779
BshVI ATCGAT 2 cut(s) 351, 2638
BsiEI CGRYCG 1 cut(s) 2797
BsiHKAI GWGCWC 4 cut(s) 247, 985, 2022, 2113
BsiHKCI CYCGRG 1 cut(s) 2584
BsiSI CCGG 5 cut(s) 47, 120, 1001, 1706, 2780
BslFI GGGAC 2 cut(s) 455, 1889
BslI CCNNNNNNNGG 7 cut(s) 439, 775, 912, 1118, 1923, 2546, 2605
BsmAI GTCTC 5 cut(s) 237, 277, 1174, 1261, 1598
BsmFI GGGAC 2 cut(s) 455, 1889
BsnI GGCC 5 cut(s) 223, 1489, 1753, 2391, 2598
BsoBI CYCGRG 1 cut(s) 2584
Bsp119I TTCGAA 1 cut(s) 1562
Bsp1286I GDGCHC 4 cut(s) 247, 985, 2022, 2113
Bsp13I TCCGGA 2 cut(s) 46, 1000
Bsp1720I GCTNAGC 1 cut(s) 2579
Bsp19I CCATGG 2 cut(s) 236, 1887
BspANI GGCC 5 cut(s) 223, 1489, 1753, 2391, 2598
BspCNI CTCAG 5 cut(s) 52, 151, 1261, 2176, 2467
BspDI ATCGAT 2 cut(s) 351, 2638
BspEI TCCGGA 2 cut(s) 46, 1000
BspFNI CGCG 1 cut(s) 524
BspHI TCATGA 2 cut(s) 540, 1135
BspMAI CTGCAG 1 cut(s) 195
BspMI ACCTGC 1 cut(s) 833
BspPI GGATC 9 cut(s) 356, 424, 437, 543, 758, 771, 2075, 2088, 2708
BspQI GCTCTTC 1 cut(s) 2118
BspT104I TTCGAA 1 cut(s) 1562
BspT107I GGYRCC 5 cut(s) 142, 275, 377, 2129, 2311
BsrFI RCCGGY 1 cut(s) 2779
BsrI ACTGG 5 cut(s) 248, 1473, 1490, 1862, 1982
BssAI RCCGGY 1 cut(s) 2779
BssECI CCNNGG 7 cut(s) 236, 344, 522, 660, 1887, 2540, 2585
BssNI GRCGYC 2 cut(s) 143, 2312
BssT1I CCWWGG 4 cut(s) 236, 660, 1887, 2540
Bst2UI CCWGG 2 cut(s) 72, 1326
Bst4CI ACNGT 5 cut(s) 322, 811, 1521, 1934, 2051
Bst6I CTCTTC 8 cut(s) 1591, 1644, 1652, 1757, 2118, 2147, 2766, 2924
BstACI GRCGYC 2 cut(s) 143, 2312
BstAPI GCANNNNNTGC 2 cut(s) 1697, 2899
BstBI TTCGAA 1 cut(s) 1562
BstC8I GCNNGC 5 cut(s) 630, 944, 1149, 1425, 2348
BstDSI CCRYGG 3 cut(s) 236, 522, 1887
BstENI CCTNNNNNAGG 1 cut(s) 2544
BstF5I GGATG 7 cut(s) 55, 1009, 1287, 1321, 1702, 2158, 2485
BstFNI CGCG 1 cut(s) 524
BstH2I RGCGCY 3 cut(s) 146, 859, 2315
BstHHI GCGC 3 cut(s) 145, 858, 2314
BstMAI GTCTC 5 cut(s) 237, 277, 1174, 1261, 1598
BstMCI CGRYCG 1 cut(s) 2797
BstNI CCWGG 2 cut(s) 72, 1326
BstNSI RCATGY 2 cut(s) 232, 632
BstSCI CCNGG 4 cut(s) 70, 118, 1324, 1705
BstSFI CTRYAG 4 cut(s) 30, 105, 191, 1428
BstUI CGCG 1 cut(s) 524
BstV1I GCAGC 9 cut(s) 1081, 1163, 1586, 1684, 1787, 2132, 2715, 2749, 2914
BstV2I GAAGAC 3 cut(s) 188, 805, 1223
BstX2I RGATCY 5 cut(s) 429, 535, 763, 2080, 2494
BstYI RGATCY 5 cut(s) 429, 535, 763, 2080, 2494
Bsu15I ATCGAT 2 cut(s) 351, 2638
Bsu36I CCTNAGG 1 cut(s) 60
BsuI GTATCC 3 cut(s) 2661, 2698, 2919
BsuRI GGCC 5 cut(s) 223, 1489, 1753, 2391, 2598
BsuTUI ATCGAT 2 cut(s) 351, 2638
BtgI CCRYGG 3 cut(s) 236, 522, 1887
BtrI CACGTC 1 cut(s) 1046
BtsCI GGATG 7 cut(s) 55, 1009, 1287, 1321, 1702, 2158, 2485
BtsI GCAGTG 3 cut(s) 789, 2148, 2345
BveI ACCTGC 1 cut(s) 833
Cac8I GCNNGC 5 cut(s) 630, 944, 1149, 1425, 2348
CciI TCATGA 2 cut(s) 540, 1135
CfoI GCGC 3 cut(s) 145, 858, 2314
Cfr10I RCCGGY 1 cut(s) 2779
Cfr13I GGNCC 4 cut(s) 657, 1876, 2390, 2597
Cfr42I CCGCGG 1 cut(s) 525
ClaI ATCGAT 2 cut(s) 351, 2638
Csp6I GTAC 2 cut(s) 1914, 2130
CspAI ACCGGT 1 cut(s) 2779
CviQI GTAC 2 cut(s) 1914, 2130
DinI GGCGCC 2 cut(s) 144, 2313
DraI TTTAAA 1 cut(s) 1618
EaeI YGGCCR 1 cut(s) 1751
Eam1104I CTCTTC 8 cut(s) 1591, 1644, 1652, 1757, 2118, 2147, 2766, 2924
EarI CTCTTC 8 cut(s) 1591, 1644, 1652, 1757, 2118, 2147, 2766, 2924
EciI GGCGGA 1 cut(s) 2030
Ecl136II GAGCTC 2 cut(s) 2020, 2111
Eco130I CCWWGG 4 cut(s) 236, 660, 1887, 2540
Eco24I GRGCYC 2 cut(s) 2022, 2113
Eco32I GATATC 1 cut(s) 598
Eco47I GGWCC 2 cut(s) 657, 1876
Eco53kI GAGCTC 2 cut(s) 2020, 2111
Eco57I CTGAAG 3 cut(s) 1818, 2099, 2128
Eco81I CCTNAGG 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 2584
EcoICRI GAGCTC 2 cut(s) 2020, 2111
EcoNI CCTNNNNNAGG 1 cut(s) 2544
EcoRII CCWGG 2 cut(s) 70, 1324
EcoRV GATATC 1 cut(s) 598
EcoT14I CCWWGG 4 cut(s) 236, 660, 1887, 2540
EcoT22I ATGCAT 1 cut(s) 293
EcoT38I GRGCYC 2 cut(s) 2022, 2113
EgeI GGCGCC 2 cut(s) 144, 2313
EheI GGCGCC 2 cut(s) 144, 2313
ErhI CCWWGG 4 cut(s) 236, 660, 1887, 2540
FaqI GGGAC 2 cut(s) 455, 1889
FauI CCCGC 3 cut(s) 529, 1503, 2838
FauNDI CATATG 1 cut(s) 1693
FbaI TGATCA 1 cut(s) 364
FokI GGATG 7 cut(s) 62, 1016, 1294, 1308, 1689, 2145, 2492
FriOI GRGCYC 2 cut(s) 2022, 2113
FspBI CTAG 6 cut(s) 225, 1041, 1052, 1098, 2298, 2664
GlaI GCGC 3 cut(s) 144, 857, 2313
GsuI CTGGAG 4 cut(s) 144, 231, 1163, 2637
HaeII RGCGCY 3 cut(s) 146, 859, 2315
HaeIII GGCC 5 cut(s) 223, 1489, 1753, 2391, 2598
HapII CCGG 5 cut(s) 47, 120, 1001, 1706, 2780
HhaI GCGC 3 cut(s) 145, 858, 2314
Hin1I GRCGYC 2 cut(s) 143, 2312
Hin6I GCGC 3 cut(s) 143, 856, 2312
HinP1I GCGC 3 cut(s) 143, 856, 2312
HincII GTYRAC 1 cut(s) 903
HindII GTYRAC 1 cut(s) 903
HindIII AAGCTT 1 cut(s) 2576
HpaII CCGG 5 cut(s) 47, 120, 1001, 1706, 2780
HphI GGTGA 5 cut(s) 505, 1876, 1951, 1954, 2525
Hpy166II GTNNAC 3 cut(s) 607, 903, 1245
Hpy8I GTNNAC 3 cut(s) 607, 903, 1245
HpyAV CCTTC 4 cut(s) 743, 1729, 1842, 2727
HpyCH4III ACNGT 5 cut(s) 322, 811, 1521, 1934, 2051
HpyCH4IV ACGT 1 cut(s) 1045
HpySE526I ACGT 1 cut(s) 1045
Hsp92I GRCGYC 2 cut(s) 143, 2312
HspAI GCGC 3 cut(s) 143, 856, 2312
KasI GGCGCC 2 cut(s) 142, 2311
Kpn2I TCCGGA 2 cut(s) 46, 1000
KpnI GGTACC 1 cut(s) 2133
Ksp22I TGATCA 1 cut(s) 364
KspI CCGCGG 1 cut(s) 525
LguI GCTCTTC 1 cut(s) 2118
Lsp1109I GCAGC 9 cut(s) 1081, 1163, 1586, 1684, 1787, 2132, 2715, 2749, 2914
LweI GCATC 6 cut(s) 486, 646, 1024, 1056, 1339, 2889
MaeI CTAG 6 cut(s) 225, 1041, 1052, 1098, 2298, 2664
MaeII ACGT 1 cut(s) 1045
MaeIII GTNAC 5 cut(s) 316, 423, 465, 811, 2407
MfeI CAATTG 1 cut(s) 1103
MflI RGATCY 5 cut(s) 429, 535, 763, 2080, 2494
MhlI GDGCHC 4 cut(s) 247, 985, 2022, 2113
MlsI TGGCCA 1 cut(s) 1753
MluNI TGGCCA 1 cut(s) 1753
Mly113I GGCGCC 2 cut(s) 143, 2312
MlyI GAGTC 5 cut(s) 178, 1237, 1600, 1950, 2436
MmeI TCCRAC 1 cut(s) 2339
Mox20I TGGCCA 1 cut(s) 1753
Mph1103I ATGCAT 1 cut(s) 293
MroI TCCGGA 2 cut(s) 46, 1000
MroXI GAANNNNTTC 3 cut(s) 24, 114, 2781
MscI TGGCCA 1 cut(s) 1753
MseI TTAA 7 cut(s) 261, 918, 1260, 1289, 1617, 2399, 2424
MslI CAYNNNNRTG 4 cut(s) 809, 1718, 1886, 2306
Msp20I TGGCCA 1 cut(s) 1753
MspA1I CMGCKG 2 cut(s) 164, 524
MspI CCGG 5 cut(s) 47, 120, 1001, 1706, 2780
MspR9I CCNGG 4 cut(s) 72, 120, 1326, 1707
MunI CAATTG 1 cut(s) 1103
MvaI CCWGG 2 cut(s) 72, 1326
MvnI CGCG 1 cut(s) 524
NarI GGCGCC 2 cut(s) 143, 2312
NciI CCSGG 2 cut(s) 120, 1707
NcoI CCATGG 2 cut(s) 236, 1887
NdeI CATATG 1 cut(s) 1693
NmuCI GTSAC 3 cut(s) 316, 465, 811
NsiI ATGCAT 1 cut(s) 293
NspI RCATGY 2 cut(s) 232, 632
NspV TTCGAA 1 cut(s) 1562
OliI CACNNNNGTG 1 cut(s) 809
PaeI GCATGC 1 cut(s) 632
PagI TCATGA 2 cut(s) 540, 1135
PciSI GCTCTTC 1 cut(s) 2118
PcsI WCGNNNNNNNCGW 1 cut(s) 2083
PdmI GAANNNNTTC 3 cut(s) 24, 114, 2781
PfeI GAWTC 6 cut(s) 310, 820, 1529, 2060, 2788, 2882
PflFI GACNNNGTC 1 cut(s) 1047
PflMI CCANNNNNTGG 1 cut(s) 775
PfoI TCCNGGA 2 cut(s) 118, 1324
PinAI ACCGGT 1 cut(s) 2779
PleI GAGTC 5 cut(s) 178, 1236, 1600, 1950, 2436
PluTI GGCGCC 2 cut(s) 146, 2315
PpsI GAGTC 5 cut(s) 178, 1236, 1600, 1950, 2436
Psp124BI GAGCTC 2 cut(s) 2022, 2113
Psp6I CCWGG 2 cut(s) 70, 1324
PspGI CCWGG 2 cut(s) 70, 1324
PspPI GGNCC 4 cut(s) 657, 1876, 2390, 2597
PstI CTGCAG 1 cut(s) 195
PsuI RGATCY 5 cut(s) 429, 535, 763, 2080, 2494
PsyI GACNNNGTC 1 cut(s) 1047
RsaI GTAC 2 cut(s) 1915, 2131
RsaNI GTAC 2 cut(s) 1914, 2130
RseI CAYNNNNRTG 4 cut(s) 809, 1718, 1886, 2306
SacI GAGCTC 2 cut(s) 2022, 2113
SacII CCGCGG 1 cut(s) 525
SapI GCTCTTC 1 cut(s) 2118
SaqAI TTAA 7 cut(s) 261, 918, 1260, 1289, 1617, 2399, 2424
Sau96I GGNCC 4 cut(s) 657, 1876, 2390, 2597
SchI GAGTC 5 cut(s) 178, 1237, 1600, 1950, 2436
ScrFI CCNGG 4 cut(s) 72, 120, 1326, 1707
SduI GDGCHC 4 cut(s) 247, 985, 2022, 2113
SfaNI GCATC 6 cut(s) 486, 646, 1024, 1056, 1339, 2889
SfcI CTRYAG 4 cut(s) 30, 105, 191, 1428
SfoI GGCGCC 2 cut(s) 144, 2313
Sfr303I CCGCGG 1 cut(s) 525
SfuI TTCGAA 1 cut(s) 1562
SgrBI CCGCGG 1 cut(s) 525
SinI GGWCC 2 cut(s) 657, 1876
SmiMI CAYNNNNRTG 4 cut(s) 809, 1718, 1886, 2306
SmlI CTYRAG 4 cut(s) 610, 1169, 1844, 2444
SmoI CTYRAG 4 cut(s) 610, 1169, 1844, 2444
SphI GCATGC 1 cut(s) 632
SspDI GGCGCC 2 cut(s) 142, 2311
SspI AATATT 1 cut(s) 651
SspMI CTAG 6 cut(s) 225, 1041, 1052, 1098, 2298, 2664
SstI GAGCTC 2 cut(s) 2022, 2113
StyD4I CCNGG 4 cut(s) 70, 118, 1324, 1705
StyI CCWWGG 4 cut(s) 236, 660, 1887, 2540
TaaI ACNGT 5 cut(s) 322, 811, 1521, 1934, 2051
TaiI ACGT 1 cut(s) 1048
TaqI TCGA 9 cut(s) 351, 788, 1078, 1360, 1543, 1562, 2086, 2638, 2793
TaqII GACCGA 2 cut(s) 453, 2811
TauI GCSGC 3 cut(s) 527, 1114, 1574
TfiI GAWTC 6 cut(s) 310, 820, 1529, 2060, 2788, 2882
Tru1I TTAA 7 cut(s) 261, 918, 1260, 1289, 1617, 2399, 2424
Tru9I TTAA 7 cut(s) 261, 918, 1260, 1289, 1617, 2399, 2424
TseFI GTSAC 3 cut(s) 316, 465, 811
TseI GCWGC 9 cut(s) 1069, 1151, 1574, 1697, 1775, 2120, 2728, 2737, 2902
Tsp45I GTSAC 3 cut(s) 316, 465, 811
TspGWI ACGGA 5 cut(s) 327, 442, 830, 2474, 2901
Tth111I GACNNNGTC 1 cut(s) 1047
Van91I CCANNNNNTGG 1 cut(s) 775
VpaK11BI GGWCC 2 cut(s) 657, 1876
XagI CCTNNNNNAGG 1 cut(s) 2544
XapI RAATTY 4 cut(s) 485, 2099, 2270, 2501
XbaI TCTAGA 1 cut(s) 1040
XceI RCATGY 2 cut(s) 232, 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 1869
XmnI GAANNNNTTC 3 cut(s) 24, 114, 2781
XspI CTAG 6 cut(s) 225, 1041, 1052, 1098, 2298, 2664
Zsp2I ATGCAT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.