MD13G1145500.v1.1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000094
Physical Location & Seq
Forward (+)
11294337 .. 11297671
3335 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1145500.v1.1.491

Sequence Viewer

Length: 1140 bp
ATGCCTTTTGGATTAACAAATGCACCTGCAGCATTTATGGATTTGATGAACATAGTCTTTAGACCGTATCTGGATCGGTTTGTGATTGTGTTTATTGAAGACATTCTAATTTATTCCAAAAGTGTTGCCAAGCACAAGAAACATCTGAGGATGGTGCTGGAAAGCCTAAGAATCAATCAGCTGTATGCTAAGTTCAGTAAATGTCAGTTTTGGCTTAACCAGATTAGTTTTCTTGGACATGTAGTGTCTGCTGAGGGAATTAGTGTGGACCCTCAAAAGGTTTCAACAGTGTCTACTTGGGAGCAACTGAGAAACGTTACTGAAGGGGTCAAGTTCGAATGGGATGAGAATTGTGAACAGAGTTTCCAGGAGCTTAAACGGCGTTTTACTCAAGCTCCCGTCCTTGCTCTTCCAAACGATGGTGATGAGTTTGAGATTTACATTGATGCATCTCTGTCAGGTTTGGGTTGGGTTCTGATCCAGCATGGGAAGGTTATCGCCTATGCTTTTAGACAACTCAAGAATCACAAAAGAAATTATCCTACTCATGATCTGGAGCTCGGAGCAGTAGTTTTTGCCCTAAAGATCTGGAGACACTATTTGTACGGCGAAAAGTGCCGCATCTTCACTGATCACAAGAGCCTAAAACATGTCCTCACTAAGGAGGATTTGAATTTGAGGCAGAGAAGATGGATGGAACTCATCAGTGATTATGACTGCACTATCGAATATCATCCCGGACATTCCTATTTCGTACGGCTTTACGATGATGGAGTATCTGTGAGTGGACCCCTTCTAAATTGCATCATGTGCATGGATCTTTCTTTGTGTATGGGCCGGATCAATTGTCTTGGGCCAAGACAAGGTTACAATTCAACACGGATATCTCATGGAAGACATGTATTTGGAGCTGACATTTTTGTTGGTAAAGAAAGAAGAAAAGGAAATGGAGATCGTCTATCAATGATCAAGGATGCTGTTAAGTGCAAGCATGTTTGGAAGCTCTGTCCGAAAGGAAATTATGATGAGAAGGGTACTCGTATTTCACTTTACTTGGAATTGGATGGTTCAGAAGACCTTCGTGATTCTAAAGTGTTTGCTGAGTTTTCCTTGCGCATTCTAGATAAATCCCTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

380

Amino Acids

43.91

Weight (kDa)

8.77

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 1 - 81 2.1e-15 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 114 - 207 1e-27 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 142 - 238 5.1e-29 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 34
Acc16I TGCGCA 1 cut(s) 1115
Acc36I ACCTGC 1 cut(s) 34
AccB7I CCANNNNNTGG 1 cut(s) 419
AccI GTMKAC 1 cut(s) 293
AciI CCGC 1 cut(s) 619
AclI AACGTT 1 cut(s) 315
AclWI GGATC 4 cut(s) 81, 472, 825, 848
AcsI RAATTY 1 cut(s) 673
AcuI CTGAAG 1 cut(s) 342
AfaI GTAC 3 cut(s) 605, 756, 1036
AfiI CCNNNNNNNGG 4 cut(s) 277, 419, 661, 863
AflIII ACRYGT 3 cut(s) 238, 649, 898
AgsI TTSAA 4 cut(s) 98, 285, 673, 876
AjnI CCWGG 1 cut(s) 366
AloI GAACNNNNNNTCC 2 cut(s) 348, 380
AluBI AGCT 6 cut(s) 181, 373, 395, 559, 911, 1003
AluI AGCT 6 cut(s) 181, 373, 395, 559, 911, 1003
Alw21I GWGCWC 1 cut(s) 561
Alw26I GTCTC 1 cut(s) 586
AlwI GGATC 4 cut(s) 81, 472, 825, 848
AoxI GGCC 2 cut(s) 835, 854
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 673
Asp700I GAANNNNTTC 2 cut(s) 102, 1077
AspLEI GCGC 1 cut(s) 1116
AspS9I GGNCC 4 cut(s) 268, 788, 835, 854
AsuC2I CCSGG 1 cut(s) 738
AsuHPI GGTGA 1 cut(s) 434
AsuII TTCGAA 1 cut(s) 336
AvaII GGWCC 2 cut(s) 268, 788
BanII GRGCYC 1 cut(s) 561
BbsI GAAGAC 3 cut(s) 105, 901, 1080
Bbv12I GWGCWC 1 cut(s) 561
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 41
BccI CCATC 6 cut(s) 145, 413, 684, 688, 764, 1058
BceAI ACGGC 3 cut(s) 395, 622, 773
BciT130I CCWGG 1 cut(s) 368
BclI TGATCA 2 cut(s) 631, 966
BcnI CCSGG 1 cut(s) 738
BcoDI GTCTC 1 cut(s) 586
BfaI CTAG 1 cut(s) 1121
BfmI CTRYAG 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 34
BglII AGATCT 1 cut(s) 585
BisI GCNGC 2 cut(s) 30, 619
BlsI GCNGC 2 cut(s) 31, 620
Bme1390I CCNGG 2 cut(s) 368, 738
Bme18I GGWCC 2 cut(s) 268, 788
BmgT120I GGNCC 4 cut(s) 268, 788, 835, 854
BmiI GGNNCC 2 cut(s) 270, 790
BmrFI CCNGG 2 cut(s) 368, 738
BmsI GCATC 5 cut(s) 436, 458, 630, 813, 964
BpiI GAAGAC 3 cut(s) 105, 901, 1080
BpmI CTGGAG 2 cut(s) 575, 610
Bpu10I CCTNAGC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 336
BpuEI CTTGAG 2 cut(s) 375, 503
BpuMI CCSGG 1 cut(s) 738
BsaXI ACNNNNNCTCC 6 cut(s) 379, 409, 555, 585, 765, 795
Bsc4I CCNNNNNNNGG 4 cut(s) 277, 419, 661, 863
BseBI CCWGG 1 cut(s) 368
BseGI GGATG 6 cut(s) 156, 349, 699, 733, 979, 1069
BseLI CCNNNNNNNGG 4 cut(s) 277, 419, 661, 863
BseMII CTCAG 4 cut(s) 137, 243, 299, 1092
BseXI GCAGC 1 cut(s) 41
BsgI GTGCAG 1 cut(s) 703
BshFI GGCC 2 cut(s) 837, 856
BsiHKAI GWGCWC 1 cut(s) 561
BsiSI CCGG 2 cut(s) 738, 838
BsiWI CGTACG 1 cut(s) 754
BslI CCNNNNNNNGG 4 cut(s) 277, 419, 661, 863
BsmAI GTCTC 1 cut(s) 586
BsmI GAATGC 1 cut(s) 1116
BsnI GGCC 2 cut(s) 837, 856
Bsp119I TTCGAA 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 561
Bsp143I GATC 9 cut(s) 73, 477, 550, 585, 631, 817, 840, 952, 966
BspACI CCGC 1 cut(s) 619
BspANI GGCC 2 cut(s) 837, 856
BspCNI CTCAG 4 cut(s) 138, 244, 300, 1093
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 2 cut(s) 270, 790
BspMAI CTGCAG 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 34
BspPI GGATC 4 cut(s) 81, 472, 825, 848
BspQI GCTCTTC 1 cut(s) 414
BspT104I TTCGAA 1 cut(s) 336
BssMI GATC 9 cut(s) 73, 477, 550, 585, 631, 817, 840, 952, 966
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 2 cut(s) 66, 289
Bst6I CTCTTC 1 cut(s) 414
BstAPI GCANNNNNTGC 1 cut(s) 810
BstBI TTCGAA 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 989
BstDEI CTNAG 7 cut(s) 146, 167, 189, 252, 308, 660, 1101
BstENI CCTNNNNNAGG 1 cut(s) 659
BstF5I GGATG 6 cut(s) 156, 349, 699, 733, 979, 1069
BstHHI GCGC 1 cut(s) 1116
BstKTI GATC 9 cut(s) 76, 480, 553, 588, 634, 820, 843, 955, 969
BstMAI GTCTC 1 cut(s) 586
BstMBI GATC 9 cut(s) 73, 477, 550, 585, 631, 817, 840, 952, 966
BstMWI GCNNNNNNNGC 4 cut(s) 29, 379, 615, 810
BstNI CCWGG 1 cut(s) 368
BstNSI RCATGY 4 cut(s) 242, 653, 902, 995
BstSCI CCNGG 2 cut(s) 366, 736
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 41
BstV2I GAAGAC 3 cut(s) 105, 901, 1080
BstX2I RGATCY 2 cut(s) 585, 817
BstYI RGATCY 2 cut(s) 585, 817
BsuRI GGCC 2 cut(s) 837, 856
BtsCI GGATG 6 cut(s) 156, 349, 699, 733, 979, 1069
BtsIMutI CAGTG 3 cut(s) 294, 627, 712
BveI ACCTGC 1 cut(s) 34
Cac8I GCNNGC 1 cut(s) 989
CciI TCATGA 1 cut(s) 547
CfoI GCGC 1 cut(s) 1116
Cfr13I GGNCC 4 cut(s) 268, 788, 835, 854
Csp6I GTAC 3 cut(s) 604, 755, 1035
CviAII CATG 9 cut(s) 239, 485, 548, 650, 808, 814, 890, 899, 992
CviQI GTAC 3 cut(s) 604, 755, 1035
DdeI CTNAG 7 cut(s) 146, 167, 189, 252, 308, 660, 1101
DpnI GATC 9 cut(s) 75, 479, 552, 587, 633, 819, 842, 954, 968
DpnII GATC 9 cut(s) 73, 477, 550, 585, 631, 817, 840, 952, 966
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Ecl136II GAGCTC 1 cut(s) 559
Eco24I GRGCYC 1 cut(s) 561
Eco32I GATATC 1 cut(s) 885
Eco47I GGWCC 2 cut(s) 268, 788
Eco53kI GAGCTC 1 cut(s) 559
Eco57I CTGAAG 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 559
EcoNI CCTNNNNNAGG 1 cut(s) 659
EcoRII CCWGG 1 cut(s) 366
EcoRV GATATC 1 cut(s) 885
EcoT22I ATGCAT 1 cut(s) 451
EcoT38I GRGCYC 1 cut(s) 561
FaeI CATG 9 cut(s) 242, 488, 551, 653, 811, 817, 893, 902, 995
FatI CATG 9 cut(s) 238, 484, 547, 649, 807, 813, 889, 898, 991
FbaI TGATCA 2 cut(s) 631, 966
FblI GTMKAC 1 cut(s) 293
Fnu4HI GCNGC 2 cut(s) 30, 619
FokI GGATG 6 cut(s) 163, 356, 706, 720, 986, 1076
FriOI GRGCYC 1 cut(s) 561
Fsp4HI GCNGC 2 cut(s) 30, 619
FspBI CTAG 1 cut(s) 1121
FspI TGCGCA 1 cut(s) 1115
GlaI GCGC 1 cut(s) 1115
GluI GCNGC 2 cut(s) 30, 619
GsuI CTGGAG 2 cut(s) 575, 610
HaeIII GGCC 2 cut(s) 837, 856
HapII CCGG 2 cut(s) 738, 838
HhaI GCGC 1 cut(s) 1116
Hin1II CATG 9 cut(s) 242, 488, 551, 653, 811, 817, 893, 902, 995
Hin6I GCGC 1 cut(s) 1114
HinP1I GCGC 1 cut(s) 1114
HinfI GANTC 3 cut(s) 171, 523, 1085
HpaII CCGG 2 cut(s) 738, 838
HphI GGTGA 1 cut(s) 434
Hpy166II GTNNAC 4 cut(s) 268, 294, 356, 788
Hpy188I TCNGA 5 cut(s) 147, 477, 563, 1011, 1072
Hpy188III TCNNGA 7 cut(s) 71, 520, 548, 554, 589, 1082, 1121
Hpy8I GTNNAC 4 cut(s) 268, 294, 356, 788
HpyAV CCTTC 5 cut(s) 317, 484, 803, 1024, 1088
HpyCH4III ACNGT 2 cut(s) 66, 289
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 7 cut(s) 23, 29, 449, 720, 804, 813, 987
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 379, 615, 810
HpyF3I CTNAG 7 cut(s) 146, 167, 189, 252, 308, 660, 1101
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 9 cut(s) 242, 488, 551, 653, 811, 817, 893, 902, 995
HspAI GCGC 1 cut(s) 1114
Ksp22I TGATCA 2 cut(s) 631, 966
Kzo9I GATC 9 cut(s) 73, 477, 550, 585, 631, 817, 840, 952, 966
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 6 cut(s) 301, 370, 400, 556, 563, 908
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 5 cut(s) 436, 458, 630, 813, 964
MaeI CTAG 1 cut(s) 1121
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 316, 866
MalI GATC 9 cut(s) 75, 479, 552, 587, 633, 819, 842, 954, 968
MboI GATC 9 cut(s) 73, 477, 550, 585, 631, 817, 840, 952, 966
MboII GAAGA 7 cut(s) 110, 401, 616, 699, 906, 948, 1085
MfeI CAATTG 1 cut(s) 844
MflI RGATCY 2 cut(s) 585, 817
MhlI GDGCHC 1 cut(s) 561
MnlI CCTC 6 cut(s) 141, 247, 282, 658, 665, 672
Mph1103I ATGCAT 1 cut(s) 451
MroXI GAANNNNTTC 2 cut(s) 102, 1077
MseI TTAA 4 cut(s) 14, 216, 375, 981
MslI CAYNNNNRTG 1 cut(s) 812
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 2 cut(s) 738, 838
MspR9I CCNGG 2 cut(s) 368, 738
MunI CAATTG 1 cut(s) 844
Mva1269I GAATGC 1 cut(s) 1116
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 4 cut(s) 29, 379, 615, 810
NciI CCSGG 1 cut(s) 738
NdeII GATC 9 cut(s) 73, 477, 550, 585, 631, 817, 840, 952, 966
NlaIII CATG 9 cut(s) 242, 488, 551, 653, 811, 817, 893, 902, 995
NlaIV GGNNCC 2 cut(s) 270, 790
NsbI TGCGCA 1 cut(s) 1115
NsiI ATGCAT 1 cut(s) 451
NspI RCATGY 4 cut(s) 242, 653, 902, 995
NspV TTCGAA 1 cut(s) 336
PagI TCATGA 1 cut(s) 547
PaqCI CACCTGC 1 cut(s) 34
PciI ACATGT 3 cut(s) 238, 649, 898
PciSI GCTCTTC 1 cut(s) 414
PctI GAATGC 1 cut(s) 1116
PdmI GAANNNNTTC 2 cut(s) 102, 1077
PfeI GAWTC 3 cut(s) 171, 523, 1085
Pfl23II CGTACG 1 cut(s) 754
PflMI CCANNNNNTGG 1 cut(s) 419
PfoI TCCNGGA 2 cut(s) 366, 736
PkrI GCNGC 2 cut(s) 31, 620
PscI ACATGT 3 cut(s) 238, 649, 898
Psp124BI GAGCTC 1 cut(s) 561
Psp1406I AACGTT 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PspLI CGTACG 1 cut(s) 754
PspN4I GGNNCC 2 cut(s) 270, 790
PspPI GGNCC 4 cut(s) 268, 788, 835, 854
PsrI GAACNNNNNNTAC 2 cut(s) 176, 208
PstI CTGCAG 1 cut(s) 31
PsuI RGATCY 2 cut(s) 585, 817
PvuII CAGCTG 1 cut(s) 181
RsaI GTAC 3 cut(s) 605, 756, 1036
RsaNI GTAC 3 cut(s) 604, 755, 1035
RseI CAYNNNNRTG 1 cut(s) 812
SacI GAGCTC 1 cut(s) 561
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 4 cut(s) 14, 216, 375, 981
SatI GCNGC 2 cut(s) 30, 619
Sau3AI GATC 9 cut(s) 73, 477, 550, 585, 631, 817, 840, 952, 966
Sau96I GGNCC 4 cut(s) 268, 788, 835, 854
ScrFI CCNGG 2 cut(s) 368, 738
SduI GDGCHC 1 cut(s) 561
SfaNI GCATC 5 cut(s) 436, 458, 630, 813, 964
SfcI CTRYAG 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 336
SinI GGWCC 2 cut(s) 268, 788
SmiMI CAYNNNNRTG 1 cut(s) 812
SmlI CTYRAG 2 cut(s) 390, 518
SmoI CTYRAG 2 cut(s) 390, 518
SsiI CCGC 1 cut(s) 619
SspMI CTAG 1 cut(s) 1121
SstI GAGCTC 1 cut(s) 561
StyD4I CCNGG 2 cut(s) 366, 736
TaaI ACNGT 2 cut(s) 66, 289
TaiI ACGT 1 cut(s) 318
TaqI TCGA 2 cut(s) 336, 726
TauI GCSGC 1 cut(s) 621
TfiI GAWTC 3 cut(s) 171, 523, 1085
Tru1I TTAA 4 cut(s) 14, 216, 375, 981
Tru9I TTAA 4 cut(s) 14, 216, 375, 981
TscAI CASTG 3 cut(s) 294, 634, 712
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 62
TspGWI ACGGA 1 cut(s) 895
TspRI CASTG 3 cut(s) 294, 634, 712
Van91I CCANNNNNTGG 1 cut(s) 419
VpaK11BI GGWCC 2 cut(s) 268, 788
XagI CCTNNNNNAGG 1 cut(s) 659
XapI RAATTY 1 cut(s) 673
XbaI TCTAGA 1 cut(s) 1120
XceI RCATGY 4 cut(s) 242, 653, 902, 995
XmiI GTMKAC 1 cut(s) 293
XmnI GAANNNNTTC 2 cut(s) 102, 1077
XspI CTAG 1 cut(s) 1121
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.