RchiOBHm_Chr2g0090701

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000094
Physical Location & Seq
Forward (+)
4441398 .. 4448134
6737 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46594

Sequence Viewer

Length: 4716 bp
ATGGATTTTATATGTTTTCCCCTGGGCCCTTCGTTTTCAAATGCCCAGATTTCAGATTTGCAGAGATTGCGTCCAGGCTCAAGAACTTGGGAATCAGCGCTTCCGTTTTTGTCCGTAGGTGGAATGAGACCCGGACGCAGATCTCGTGCTGGCAGGAACCATTCACCCGCTAGTGAGGGTGATGATGAGCATGTTCCTCGTGGGTTGTTACGGACCGTGGAGCGGTTGTTTGAGCGTTTTGCAGCGGCACTCCCCAATCCTAGGACTGACTATACTGTGGAGCGTGCCAGACGCCATGGGGCGTATACTTTCTCTAGTGCTCCTACGGAGTCCGTAGCAGGAGACTGGATTACCCGCATGGAGAGAGTATTTGAGTCCTTGGGCTGTCCAGCTGCTAGGAGGGTTCCTTTGGCTATTGACCTCCTAGACGGGGATGCATGGCTTTGGTGGCAGGGTACCAGGAATATGGGTTATGACCCAACTACCATGACTTGGGAAGAGTTCAAAACGGAGTTCTCAAATCGGTACTATAATCAGGCATCCCAGCACCGTCTCCGATTTGAGTTCATGCAGTTGAAGCAGACTGAGGAGATGACTGTGTTACAGTATGAGGAGCGTTTCATTGCTTTGTCTCGGTTTGCCCCTGAGTTGGTGGCGACAGAAAAGTTGAAGGTTGATCAGTTTATCAATGGCCTTCTACCTGTATATCGGGATTGGTTGGCGCCTCATGATTATCCGACTTTTAAGTTAGCTGTGGAGGCTGCTATGAGGTGTGAGGCTAGATATCTGGACGGTTCCCGACCTTTGGAGATTGGCGGTCCCAGTCAGGGGCCATCTAAGAGAATTGCCTCTAGTTCGGGTTCTGCATCGTCATCAGGCAGTAGACCGAGCAGTTCAGATTCTAGCTCTCGTCAGCGTTTCAGGGGACGCTTCAGGAGGCCTGGGCAGACCGGTAGGAGACAGTCCAGGGGTGGCACTGCTAGTTCCAGTGGAGGCTTTGGTAGACAGGCGATTCCGAGAGACTATCCCCAGTGTGCTACTTGTGGTAGACACCATGCAGGCCCGTGTCAGGCAGGTGTGGGGACTTGTTACCAGTGTGGCCAGTGGGGTCACTACAGGAGGGAATGCCCTCAGTTGACCCAGGGAGTCTTCACTACTACTAGTCAGAGTATGGGTCAGACCTCTGTGGGTGCTACTAGTTCAGGCTCTCATGGCAGTTTATCAGGCAGGAGCAGCACTCAGTCGGGTCGTGGACAGAGAGGGCGTCCAGTGACCCAGGCCCGTCTTCATGCTATGACCCAGCAGGAGGGTCGCACTGCACCGAACGTCATTATGGGTATGTTAGTTGTTTTTGGTCAACCAGCTTTCATTTTAATTGATCCTGGAGCCTCTCACTCCTTTATGTCTAAGAGGTTTTCTTTCTTTGCTAATGTGCCCCCATCTCTCCTACTCGGAGAGTGGCATGTTGTTCTACCATCGGGGGAAAGACATAGAATTGAGTGGGTACCTCGTTTTTGTGGTGTGTTTGTAGAAGGAGTTTGTTTAGAGGCGGACTTGATTCCATTTGAGTTAGTGGAGTTTGATGTAATCCTCGGGATGGATTTCCTACGGATGCATCATGCCTTGGTGGATTGCTTTTGTAGTACTGTATTATTTCGGAGTCCGGGTAAGCCAGTTGTCACCTTTTATGGTGAACGGGAGGTTCTCCCATCTTGCATAATCTCAGCTTTAACTGCTAAGAAGATGTTGAGTAAGGGTTGCCAAGCTTATTTGGCACATGTGGTGAATTCAAATGCCGAAGTTATGGATCTTAGCCAAATTCCTGTTGTTGGTGACTATCCAGATGTATTTCCAGAAGAATTGCCTGGATTGCCCCCGGTGCGAGAGATAGACTTTACCATTGATTTACTTCCAGGTACAACACCCATCTCTCAAGCACCTTATAGAATGGCACCGGCGGAATTGAAAGAGTTGTATGTACAGTTGCAGGAGTTAACGGATAAGGGATTTATACGACCTAGTGTATCTCCCTGGGGTGCACCTGTGTTGTTTGTGAAGAAGAAAGACGGTACTTTGAGGCTTTGTATTGATTACCGGAAACTAAACAGGGTGACTATAAGGGATAAATATCCCTTGCCCCGCATTGATGATTTGTTTGACCAGTTGAGGGGTGCTAAAGTTTTCTCAAAGATTGATTTGAGGTCTGGTTATCATCAGTTACGGATTAAAGAGGAGGATGTAGCCAAAACTGCTTTTCGATCACGTTATGGTCATTATGAGTTCCTTGTTATGCCTTTTGGGTTGACTAATGCACCCGCTGCTTTCATGGATCTCATGAACAGGGTGTTTCGCCCGTATCTTGACCGCTTTGTGATTGTGTTCATTGACGACATATTGGTTTATTCTAAGAGTGAGGAGTTACATGTTAAGCACTTGAATATTGTGTTGGAGACTCTACGGCTACACCAATTGTATGCTAAATTCAGTAAGTGTGAGTTTTGGCTTGACCAAGTGACATTCTTGGGTCACGTCATTACAGCTGGTGGTGTTAGTGTGGATCCCCAAAAAGTAGAAGCCGTGTTGAATTGGGAAAGACCTACCAATGTGACGGAAATTCGTAGTTTCTTGGGTCTTGCTGGTTACTATCGACGTTTTGTGCAAAATTTTTCTAGAATTGCCGCTCCTCTTACTAAGTTAACGAGAAAGGGTGTCAGATTTGTTTGGTCTGAAAATTGTGAGCGGAGCTTCCAAGAACTTAAGAGTCGGCTGACTAGTGCTCCAATTCTATCCTTGCCTGATGATAGTGGGGAGTATGTAATTTACAGCGATGCCTCTAGACAAGGCTTGGGTTGTGTTTTAATGCAGCATGGTAATGTGATTGCTTATGCTTCTAGACAGTTGAAGCCACATGAGTTGAATTATCCCACACATGACTTAGAATTGGCAGCTATTGTACTTGCTCTTAAGCTATGGAGGCATTATCTGTATGGAGCCAGATGTCAGATTTTCACTGACCATAAGAGCCTCAAGTATGTGTTTACACAACCGAATCTAAATTTAAGACAACGAAGATGGATGGAATTGATTGAAGATTATGATTGTACCATTGAGTATCACCCCGGTAAAGCGAATGTGGTGGCGGATGCACTTAGTAGGAATCCATCCGTGACCTTGTCATATTTAAGGGCCACTCGAGTACCCCTATTGTCAGAGTTGAGGTCTACGGGGGTTGAGTTATCGGTTGATGAGGTTGGTACTCTGGTGGCTAGTTTTCATGTCAGACCAGCATTTATTGATAAAATACGGGAAGCCCAGCCTCTTGATCCAAGAATTGAAGGGATTAAAGAAGGTGTTCGTGGTGGTTGGCAACTTGAGTTTTCTATTCGAAGAGATGGGACATTGATGTTTGGGAAGAGACTTTGTGTTCCTAACGTTGAAGCACTTAAACGAGAAATACTTGATGAAGCTCATAACTCCGCGTATGCCCTGCATCCTGGTGGTACAAAAATGTATCGGACTCTCAAGGAGTACTATTGGTGGCCAAACATGAAAAGAGAAATTGCAGCTTTTGTGAGCAAATGCCTTGTGTGCCAGCAAGTGAAAGCGGAAAGGCAAAAACCGTCGGGGTTGTTGCAACCTTTGCCAATCCCAGAATGGAAATGGGAACATCTCACCATGGATTTTATTTACAAGTTACCTCGTACGCAGGATGGTAATGATGGTATTTGGGTGATTGTAGATCGACTCACCAAATCAGCTCATTTTCTGGCGGTTAAGGAAACCTTTAGTTTGGATAAACTGGCAAAGTTGTATGTGGACGAAATTGTAAAGCTTCATGGTGTCCCTGAGTCCATTGTTTCTGATCGTGATGCTCGATTCACATCAAAGTTTTGGAGGAAAGTTCACAAATTTATGGGAACAAAATTACAATTTAGCACTGCTTTCCATCCTCAAACTGATGGACAATCTGAGCGGACTATACAAACTTTGGAAGACATGTTGAGGGCTTGTTCTCTACAATTTAAAGGAAGTTGGGATAAGCACTTGGCTTTGATGGAGTTTGCATATAACAACAGTTACCATTCGAGTACTGGTATGGCTCCCTACGAAGCTTTGTATGGGAAACAGTGTAGGACCCCCTTGTGTTGGGATGAAGTGGGAGAAAGACAACTTATTGGTCCAGAGATCGTTGAAATCACAACAAATAAAGTCAAAGTGATCAGAGAGAAACTCAAGACGGCTCAAAGCAGACAGAAGAGCTACGCAGATAAACACAGGAAGCATCTTGAATTTCAAGTTGGTGATTGGGTATTTCTGAAGTTATCTCCTTGGAAGGGTGTGGTAAGGTTTGGTAAACGAGGAAAACTAAGTCCAAGGTATATTGGTCCCTATGAGATTGTGGAACGAATTGGTCTGGTTGCTTACCGCTTGGCTTTACCTCCACAACTATCTCAAGTACATGATGTATTCCACGTCTCCATGCTTCGCAAGTACATCACTGATCCTTCACATGTGTTACCAGCTCAACCCATTACACTTACAGAAGATCTAACATATGAAGAAGAACCAGTACAGATCCTTGATCGTCGTGAGCAAGTACTCCGAAGTAAGATTATACCTTTGGTTAAGGTATTATGGAGGAATCACCTGTTTGAAGAAGCTACTTGGGAACCAGAGGATCAAATGAGGCAACAGTATCCACATCTTTTTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

1571

Amino Acids

179.07

Weight (kDa)

9.14

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 141 - 233 1.3e-14 Retrotransposon gag protein
Ty3_capsid PF19259 141 - 259 6.5e-08 Ty3 transposon capsid-like protein
RVP_2 PF08284 424 - 553 1.5e-25 Retroviral aspartyl protease
RVT_1 PF00078 685 - 845 2.8e-37 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 908 - 1001 3.2e-30 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 934 - 1032 5.3e-31 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 1146 - 1202 8.8e-19 Integrase zinc binding domain
SH3_Tf2-1 PF24626 1434 - 1498 1.2e-27 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1064
Acc36I ACCTGC 1 cut(s) 1064
Acc65I GGTACC 2 cut(s) 455, 1504
AccB1I GGYRCC 4 cut(s) 455, 721, 1504, 1951
AccB7I CCANNNNNTGG 1 cut(s) 492
AccBSI CCGCTC 4 cut(s) 223, 2681, 2740, 3973
AccI GTMKAC 5 cut(s) 305, 883, 1003, 1048, 3221
AccII CGCG 1 cut(s) 3479
AclI AACGTT 1 cut(s) 3432
AclWI GGATC 9 cut(s) 1373, 1815, 2337, 2552, 2565, 3317, 4496, 4570, 4686
AcoI YGGCCR 2 cut(s) 1099, 3539
AcsI RAATTY 8 cut(s) 1786, 1818, 2480, 2613, 2662, 3055, 3908, 4289
AcuI CTGAAG 2 cut(s) 916, 4337
AcyI GRCGYC 3 cut(s) 292, 722, 1264
AfeI AGCGCT 1 cut(s) 99
AflII CTTAAG 2 cut(s) 2756, 2963
AflIII ACRYGT 4 cut(s) 1777, 2422, 3996, 4510
AgeI ACCGGT 1 cut(s) 950
AhlI ACTAGT 3 cut(s) 1160, 1196, 2771
AjiI CACGTC 2 cut(s) 2530, 4474
AjuI GAANNNNNNNTTGG 4 cut(s) 2429, 2461, 4281, 4313
Alw21I GWGCWC 3 cut(s) 322, 2041, 2779
Alw26I GTCTC 9 cut(s) 121, 336, 557, 636, 952, 1014, 2444, 3409, 4480
Alw44I GTGCAC 1 cut(s) 2037
AlwI GGATC 9 cut(s) 1373, 1815, 2337, 2552, 2565, 3317, 4496, 4570, 4686
Ama87I CYCGRG 2 cut(s) 1592, 3192
Aor51HI AGCGCT 1 cut(s) 99
AoxI GGCC 9 cut(s) 25, 691, 830, 938, 1060, 1099, 1278, 3186, 3539
ApaI GGGCCC 1 cut(s) 29
ApaLI GTGCAC 1 cut(s) 2037
ApeKI GCWGC 8 cut(s) 242, 392, 761, 1233, 2318, 2863, 2945, 3563
ApoI RAATTY 8 cut(s) 1786, 1818, 2480, 2613, 2662, 3055, 3908, 4289
AsiGI ACCGGT 1 cut(s) 950
Asp700I GAANNNNTTC 1 cut(s) 3351
Asp718I GGTACC 2 cut(s) 455, 1504
AspA2I CCTAGG 1 cut(s) 260
AspLEI GCGC 2 cut(s) 100, 724
AsuC2I CCSGG 4 cut(s) 132, 1665, 1877, 3120
AsuII TTCGAA 1 cut(s) 3385
AvaI CYCGRG 2 cut(s) 1592, 3192
AvaII GGWCC 5 cut(s) 213, 818, 4134, 4178, 4385
AvrII CCTAGG 1 cut(s) 260
BaeGI GKGCMC 3 cut(s) 29, 1437, 2041
BaeI ACNNNNGTAYC 4 cut(s) 3180, 3213, 3246, 3279
BalI TGGCCA 2 cut(s) 1101, 3541
BamHI GGATCC 1 cut(s) 2557
BanI GGYRCC 4 cut(s) 455, 721, 1504, 1951
BanII GRGCYC 1 cut(s) 29
BarI GAAGNNNNNNTAC 2 cut(s) 4554, 4586
BauI CACGAG 2 cut(s) 144, 198
BbsI GAAGAC 3 cut(s) 1141, 1277, 3999
Bbv12I GWGCWC 3 cut(s) 322, 2041, 2779
BbvI GCAGC 8 cut(s) 254, 379, 748, 1245, 2305, 2875, 2957, 3575
BceAI ACGGC 3 cut(s) 2474, 2561, 4254
BcgI CGANNNNNNTGC 4 cut(s) 179, 213, 1292, 1326
BciVI GTATCC 1 cut(s) 4707
BclI TGATCA 2 cut(s) 676, 4218
BcnI CCSGG 4 cut(s) 132, 1665, 1877, 3120
BcoDI GTCTC 9 cut(s) 121, 336, 557, 636, 952, 1014, 2444, 3409, 4480
BcuI ACTAGT 3 cut(s) 1160, 1196, 2771
BfmI CTRYAG 1 cut(s) 1114
BfoI RGCGCY 2 cut(s) 101, 725
BfrI CTTAAG 2 cut(s) 2756, 2963
BfuAI ACCTGC 1 cut(s) 1064
BfuI GTATCC 1 cut(s) 4707
BglII AGATCT 2 cut(s) 140, 4546
BlnI CCTAGG 1 cut(s) 260
BmcAI AGTACT 4 cut(s) 1645, 3530, 4090, 4599
Bme18I GGWCC 5 cut(s) 213, 818, 4134, 4178, 4385
BmeT110I CYCGRG 2 cut(s) 1592, 3192
BmgBI CACGTC 2 cut(s) 2530, 4474
BmrI ACTGGG 2 cut(s) 816, 1024
BmuI ACTGGG 2 cut(s) 816, 1024
BpiI GAAGAC 3 cut(s) 1141, 1277, 3999
BplI GAGNNNNNCTC 4 cut(s) 1222, 1254, 4215, 4247
BpmI CTGGAG 1 cut(s) 1404
Bpu14I TTCGAA 1 cut(s) 3385
BpuEI CTTGAG 7 cut(s) 64, 1917, 3011, 3392, 3506, 4217, 4437
BpuMI CCSGG 4 cut(s) 132, 1665, 1877, 3120
BsaBI GATNNNNATC 2 cut(s) 2127, 3880
BsaHI GRCGYC 3 cut(s) 292, 722, 1264
BsaI GGTCTC 1 cut(s) 121
BsaWI WCCGGW 2 cut(s) 950, 2094
BsaXI ACNNNNNCTCC 6 cut(s) 212, 242, 1651, 1681, 2761, 2791
Bse118I RCCGGY 2 cut(s) 950, 1954
Bse3DI GCAATG 1 cut(s) 621
Bse8I GATNNNNATC 2 cut(s) 2127, 3880
BseJI GATNNNNATC 2 cut(s) 2127, 3880
BseMI GCAATG 1 cut(s) 621
BseMII CTCAG 7 cut(s) 576, 636, 1145, 1253, 1737, 3837, 3960
BseRI GAGGAG 5 cut(s) 602, 626, 2246, 2429, 2673
BseSI GKGCMC 3 cut(s) 29, 1437, 2041
BseXI GCAGC 8 cut(s) 254, 379, 748, 1245, 2305, 2875, 2957, 3575
BseYI CCCAGC 3 cut(s) 543, 1299, 3312
BsgI GTGCAG 1 cut(s) 1302
Bsh1236I CGCG 1 cut(s) 3479
BshFI GGCC 9 cut(s) 27, 693, 832, 940, 1062, 1101, 1280, 3188, 3541
BshNI GGYRCC 4 cut(s) 455, 721, 1504, 1951
BshTI ACCGGT 1 cut(s) 950
BsiHKAI GWGCWC 3 cut(s) 322, 2041, 2779
BsiHKCI CYCGRG 2 cut(s) 1592, 3192
BsiSI CCGG 7 cut(s) 132, 951, 1664, 1877, 1955, 2095, 3120
BsiWI CGTACG 1 cut(s) 3701
BslFI GGGAC 6 cut(s) 804, 939, 1096, 3409, 3827, 4371
BsmAI GTCTC 9 cut(s) 121, 336, 557, 636, 952, 1014, 2444, 3409, 4480
BsmBI CGTCTC 2 cut(s) 557, 4480
BsmFI GGGAC 6 cut(s) 804, 939, 1096, 3409, 3827, 4371
BsmI GAATGC 1 cut(s) 1130
BsnI GGCC 9 cut(s) 27, 693, 832, 940, 1062, 1101, 1280, 3188, 3541
Bso31I GGTCTC 1 cut(s) 121
BsoBI CYCGRG 2 cut(s) 1592, 3192
Bsp119I TTCGAA 1 cut(s) 3385
Bsp120I GGGCCC 1 cut(s) 25
Bsp1286I GDGCHC 5 cut(s) 29, 322, 1437, 2041, 2779
Bsp1407I TGTACA 1 cut(s) 1978
Bsp19I CCATGG 2 cut(s) 295, 3675
BspANI GGCC 9 cut(s) 27, 693, 832, 940, 1062, 1101, 1280, 3188, 3541
BspCNI CTCAG 7 cut(s) 577, 637, 1144, 1252, 1736, 3838, 3961
BspFNI CGCG 1 cut(s) 3479
BspHI TCATGA 2 cut(s) 727, 2334
BspMI ACCTGC 1 cut(s) 1064
BspPI GGATC 9 cut(s) 1373, 1815, 2337, 2552, 2565, 3317, 4496, 4570, 4686
BspQI GCTCTTC 1 cut(s) 4250
BspT104I TTCGAA 1 cut(s) 3385
BspT107I GGYRCC 4 cut(s) 455, 721, 1504, 1951
BspTI CTTAAG 2 cut(s) 2756, 2963
BspTNI GGTCTC 1 cut(s) 121
BsrBI CCGCTC 4 cut(s) 223, 2681, 2740, 3973
BsrDI GCAATG 1 cut(s) 621
BsrFI RCCGGY 2 cut(s) 950, 1954
BsrGI TGTACA 1 cut(s) 1978
BssAI RCCGGY 2 cut(s) 950, 1954
BssNAI GTATAC 1 cut(s) 306
BssNI GRCGYC 3 cut(s) 292, 722, 1264
BssSI CACGAG 2 cut(s) 144, 198
BssT1I CCWWGG 7 cut(s) 260, 295, 378, 1623, 3675, 4328, 4373
Bst1107I GTATAC 1 cut(s) 306
Bst2BI CACGAG 2 cut(s) 144, 198
Bst6I CTCTTC 4 cut(s) 492, 3382, 3407, 4250
BstACI GRCGYC 3 cut(s) 292, 722, 1264
BstAFI CTTAAG 2 cut(s) 2756, 2963
BstAPI GCANNNNNTGC 3 cut(s) 67, 2318, 3640
BstAUI TGTACA 1 cut(s) 1978
BstBI TTCGAA 1 cut(s) 3385
BstC8I GCNNGC 4 cut(s) 151, 285, 1060, 3593
BstDSI CCRYGG 3 cut(s) 216, 295, 3675
BstFNI CGCG 1 cut(s) 3479
BstH2I RGCGCY 2 cut(s) 101, 725
BstHHI GCGC 2 cut(s) 100, 724
BstMAI GTCTC 9 cut(s) 121, 336, 557, 636, 952, 1014, 2444, 3409, 4480
BstNSI RCATGY 6 cut(s) 194, 1466, 1781, 2426, 4000, 4514
BstSFI CTRYAG 1 cut(s) 1114
BstSLI GKGCMC 3 cut(s) 29, 1437, 2041
BstUI CGCG 1 cut(s) 3479
BstV1I GCAGC 8 cut(s) 254, 379, 748, 1245, 2305, 2875, 2957, 3575
BstV2I GAAGAC 3 cut(s) 1141, 1277, 3999
BstX2I RGATCY 6 cut(s) 140, 1807, 2329, 2557, 4546, 4575
BstXI CCANNNNNNTGG 1 cut(s) 466
BstYI RGATCY 6 cut(s) 140, 1807, 2329, 2557, 4546, 4575
BstZ17I GTATAC 1 cut(s) 306
BsuI GTATCC 1 cut(s) 4707
BsuRI GGCC 9 cut(s) 27, 693, 832, 940, 1062, 1101, 1280, 3188, 3541
BtgI CCRYGG 3 cut(s) 216, 295, 3675
BtgZI GCGATG 1 cut(s) 2841
BtrI CACGTC 2 cut(s) 2530, 4474
BtsI GCAGTG 3 cut(s) 975, 1314, 3936
BveI ACCTGC 1 cut(s) 1064
Cac8I GCNNGC 4 cut(s) 151, 285, 1060, 3593
CciI TCATGA 2 cut(s) 727, 2334
CfoI GCGC 2 cut(s) 100, 724
Cfr10I RCCGGY 2 cut(s) 950, 1954
CpoI CGGWCCG 1 cut(s) 213
CseI GACGC 5 cut(s) 59, 144, 300, 936, 1253
CspAI ACCGGT 1 cut(s) 950
CspCI CAANNNNNGTGG 2 cut(s) 2895, 2930
CspI CGGWCCG 1 cut(s) 213
DinI GGCGCC 1 cut(s) 723
DraI TTTAAA 1 cut(s) 4024
EaeI YGGCCR 2 cut(s) 1099, 3539
Eam1104I CTCTTC 4 cut(s) 492, 3382, 3407, 4250
EarI CTCTTC 4 cut(s) 492, 3382, 3407, 4250
EciI GGCGGA 3 cut(s) 1565, 1973, 3155
Eco130I CCWWGG 7 cut(s) 260, 295, 378, 1623, 3675, 4328, 4373
Eco147I AGGCCT 1 cut(s) 940
Eco24I GRGCYC 1 cut(s) 29
Eco31I GGTCTC 1 cut(s) 121
Eco32I GATATC 1 cut(s) 785
Eco47I GGWCC 5 cut(s) 213, 818, 4134, 4178, 4385
Eco47III AGCGCT 1 cut(s) 99
Eco57I CTGAAG 2 cut(s) 916, 4337
Eco88I CYCGRG 2 cut(s) 1592, 3192
EcoO109I RGGNCCY 2 cut(s) 26, 4134
EcoRI GAATTC 1 cut(s) 1786
EcoRV GATATC 1 cut(s) 785
EcoT14I CCWWGG 7 cut(s) 260, 295, 378, 1623, 3675, 4328, 4373
EcoT22I ATGCAT 2 cut(s) 439, 1617
EcoT38I GRGCYC 1 cut(s) 29
EgeI GGCGCC 1 cut(s) 723
EheI GGCGCC 1 cut(s) 723
ErhI CCWWGG 7 cut(s) 260, 295, 378, 1623, 3675, 4328, 4373
Esp3I CGTCTC 2 cut(s) 557, 4480
FalI AAGNNNNNCTT 2 cut(s) 3767, 3799
FaqI GGGAC 6 cut(s) 804, 939, 1096, 3409, 3827, 4371
FauI CCCGC 4 cut(s) 175, 362, 2147, 2323
FauNDI CATATG 1 cut(s) 4555
FbaI TGATCA 2 cut(s) 676, 4218
FblI GTMKAC 5 cut(s) 305, 883, 1003, 1048, 3221
FriOI GRGCYC 1 cut(s) 29
GlaI GCGC 2 cut(s) 99, 723
GsaI CCCAGC 3 cut(s) 547, 1303, 3316
GsuI CTGGAG 1 cut(s) 1404
HaeII RGCGCY 2 cut(s) 101, 725
HaeIII GGCC 9 cut(s) 27, 693, 832, 940, 1062, 1101, 1280, 3188, 3541
HapII CCGG 7 cut(s) 132, 951, 1664, 1877, 1955, 2095, 3120
HgaI GACGC 5 cut(s) 59, 144, 300, 936, 1253
HhaI GCGC 2 cut(s) 100, 724
Hin1I GRCGYC 3 cut(s) 292, 722, 1264
Hin6I GCGC 2 cut(s) 98, 722
HinP1I GCGC 2 cut(s) 98, 722
HincII GTYRAC 5 cut(s) 1137, 1358, 1995, 2304, 2697
HindII GTYRAC 5 cut(s) 1137, 1358, 1995, 2304, 2697
HindIII AAGCTT 3 cut(s) 1764, 3830, 4110
HpaI GTTAAC 2 cut(s) 1995, 2697
HpaII CCGG 7 cut(s) 132, 951, 1664, 1877, 1955, 2095, 3120
Hpy99I CGWCG 3 cut(s) 2652, 3625, 4590
HpyAV CCTTC 8 cut(s) 39, 664, 704, 1526, 3329, 3341, 4327, 4515
HpyCH4IV ACGT 6 cut(s) 1326, 2263, 2529, 2650, 3432, 4473
HpySE526I ACGT 6 cut(s) 1326, 2263, 2529, 2650, 3432, 4473
Hsp92I GRCGYC 3 cut(s) 292, 722, 1264
HspAI GCGC 2 cut(s) 98, 722
KasI GGCGCC 1 cut(s) 721
KpnI GGTACC 2 cut(s) 459, 1508
Ksp22I TGATCA 2 cut(s) 676, 4218
KspAI GTTAAC 2 cut(s) 1995, 2697
LguI GCTCTTC 1 cut(s) 4250
Lsp1109I GCAGC 8 cut(s) 254, 379, 748, 1245, 2305, 2875, 2957, 3575
MaeII ACGT 6 cut(s) 1326, 2263, 2529, 2650, 3432, 4473
MbiI CCGCTC 4 cut(s) 223, 2681, 2740, 3973
MfeI CAATTG 1 cut(s) 2468
MflI RGATCY 6 cut(s) 140, 1807, 2329, 2557, 4546, 4575
MhlI GDGCHC 5 cut(s) 29, 322, 1437, 2041, 2779
MlsI TGGCCA 2 cut(s) 1101, 3541
MluNI TGGCCA 2 cut(s) 1101, 3541
Mly113I GGCGCC 1 cut(s) 722
MlyI GAGTC 9 cut(s) 338, 383, 1155, 1669, 2446, 2770, 3511, 3738, 3857
MmeI TCCRAC 2 cut(s) 761, 2427
Mox20I TGGCCA 2 cut(s) 1101, 3541
Mph1103I ATGCAT 2 cut(s) 439, 1617
MroXI GAANNNNTTC 1 cut(s) 3351
MscI TGGCCA 2 cut(s) 1101, 3541
MslI CAYNNNNRTG 2 cut(s) 2871, 3495
Msp20I TGGCCA 2 cut(s) 1101, 3541
MspA1I CMGCKG 4 cut(s) 245, 392, 2318, 2540
MspCI CTTAAG 2 cut(s) 2756, 2963
MspI CCGG 7 cut(s) 132, 951, 1664, 1877, 1955, 2095, 3120
MunI CAATTG 1 cut(s) 2468
Mva1269I GAATGC 1 cut(s) 1130
MvnI CGCG 1 cut(s) 3479
NarI GGCGCC 1 cut(s) 722
NciI CCSGG 4 cut(s) 132, 1665, 1877, 3120
NcoI CCATGG 2 cut(s) 295, 3675
NdeI CATATG 1 cut(s) 4555
NmuCI GTSAC 9 cut(s) 1109, 1270, 1678, 1832, 2110, 2512, 2525, 2605, 3166
NsiI ATGCAT 2 cut(s) 439, 1617
NspI RCATGY 6 cut(s) 194, 1466, 1781, 2426, 4000, 4514
NspV TTCGAA 1 cut(s) 3385
PaeR7I CTCGAG 1 cut(s) 3192
PagI TCATGA 2 cut(s) 727, 2334
PaqCI CACCTGC 1 cut(s) 1064
PasI CCCWGGG 3 cut(s) 22, 1141, 2031
PceI AGGCCT 1 cut(s) 940
PciI ACATGT 4 cut(s) 1777, 2422, 3996, 4510
PciSI GCTCTTC 1 cut(s) 4250
PcsI WCGNNNNNNNCGW 2 cut(s) 142, 3871
PctI GAATGC 1 cut(s) 1130
PdmI GAANNNNTTC 1 cut(s) 3351
PfeI GAWTC 8 cut(s) 92, 899, 1012, 1558, 3049, 3157, 3876, 4642
Pfl23II CGTACG 1 cut(s) 3701
PflFI GACNNNGTC 1 cut(s) 3172
PflMI CCANNNNNTGG 1 cut(s) 492
PfoI TCCNGGA 1 cut(s) 1381
PinAI ACCGGT 1 cut(s) 950
PleI GAGTC 9 cut(s) 337, 382, 1154, 1668, 2446, 2769, 3511, 3738, 3856
PluTI GGCGCC 1 cut(s) 725
PpsI GAGTC 9 cut(s) 337, 382, 1154, 1668, 2446, 2769, 3511, 3738, 3856
PpuMI RGGWCCY 1 cut(s) 4134
PscI ACATGT 4 cut(s) 1777, 2422, 3996, 4510
Psp1406I AACGTT 1 cut(s) 3432
Psp5II RGGWCCY 1 cut(s) 4134
PspFI CCCAGC 3 cut(s) 543, 1299, 3312
PspLI CGTACG 1 cut(s) 3701
PspOMI GGGCCC 1 cut(s) 25
PspPPI RGGWCCY 1 cut(s) 4134
PspXI VCTCGAGB 1 cut(s) 3192
PsuI RGATCY 6 cut(s) 140, 1807, 2329, 2557, 4546, 4575
PsyI GACNNNGTC 1 cut(s) 3172
PvuII CAGCTG 2 cut(s) 392, 2540
RseI CAYNNNNRTG 2 cut(s) 2871, 3495
Rsr2I CGGWCCG 1 cut(s) 213
RsrII CGGWCCG 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 4250
ScaI AGTACT 4 cut(s) 1645, 3530, 4090, 4599
SchI GAGTC 9 cut(s) 338, 383, 1155, 1669, 2446, 2770, 3511, 3738, 3857
SduI GDGCHC 5 cut(s) 29, 322, 1437, 2041, 2779
SfcI CTRYAG 1 cut(s) 1114
SfoI GGCGCC 1 cut(s) 723
Sfr274I CTCGAG 1 cut(s) 3192
SfuI TTCGAA 1 cut(s) 3385
SgrAI CRCCGGYG 1 cut(s) 1954
SinI GGWCC 5 cut(s) 213, 818, 4134, 4178, 4385
SlaI CTCGAG 1 cut(s) 3192
SmiMI CAYNNNNRTG 2 cut(s) 2871, 3495
SpeI ACTAGT 3 cut(s) 1160, 1196, 2771
SseBI AGGCCT 1 cut(s) 940
SspDI GGCGCC 1 cut(s) 721
SspI AATATT 1 cut(s) 2440
StuI AGGCCT 1 cut(s) 940
StyI CCWWGG 7 cut(s) 260, 295, 378, 1623, 3675, 4328, 4373
TaiI ACGT 6 cut(s) 1329, 2266, 2532, 2653, 3435, 4476
TaqI TCGA 7 cut(s) 2257, 2647, 3193, 3385, 3742, 3874, 4085
TaqII GACCGA 1 cut(s) 901
TatI WGTACW 9 cut(s) 1643, 1978, 2953, 3528, 4088, 4456, 4491, 4570, 4597
TauI GCSGC 2 cut(s) 248, 2681
TfiI GAWTC 8 cut(s) 92, 899, 1012, 1558, 3049, 3157, 3876, 4642
TseFI GTSAC 9 cut(s) 1109, 1270, 1678, 1832, 2110, 2512, 2525, 2605, 3166
TseI GCWGC 8 cut(s) 242, 392, 761, 1233, 2318, 2863, 2945, 3563
Tsp45I GTSAC 9 cut(s) 1109, 1270, 1678, 1832, 2110, 2512, 2525, 2605, 3166
Tth111I GACNNNGTC 1 cut(s) 3172
Van91I CCANNNNNTGG 1 cut(s) 492
Vha464I CTTAAG 2 cut(s) 2756, 2963
VneI GTGCAC 1 cut(s) 2037
VpaK11BI GGWCC 5 cut(s) 213, 818, 4134, 4178, 4385
XapI RAATTY 8 cut(s) 1786, 1818, 2480, 2613, 2662, 3055, 3908, 4289
XbaI TCTAGA 3 cut(s) 2669, 2834, 2891
XceI RCATGY 6 cut(s) 194, 1466, 1781, 2426, 4000, 4514
XcmI CCANNNNNNNNNTGG 3 cut(s) 3651, 3657, 4088
XhoI CTCGAG 1 cut(s) 3192
XmaJI CCTAGG 1 cut(s) 260
XmiI GTMKAC 5 cut(s) 305, 883, 1003, 1048, 3221
XmnI GAANNNNTTC 1 cut(s) 3351
ZrmI AGTACT 4 cut(s) 1645, 3530, 4090, 4599
Zsp2I ATGCAT 2 cut(s) 439, 1617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.