RchiOBHm_Chr5g0049881

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000094
Physical Location & Seq
Forward (+)
47998771 .. 48005540
6770 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32751

Sequence Viewer

Length: 1386 bp
ATGGATTTTATATGTTTTCCCCTGGGCCCTTCGTTTTCAAATGCCCAGATTTCAGATTTGCAGAGATTGCGTCCAGGCTCAAGAACTTGGGAATCAGCGCTTCCGTTTTTGTCCGTAGGTGGAATGAGACCCGGACGCAGATCTCGTGCTGGCAGGAACCATTCACCCGCTAGTGAGGGTGATGATGAGCATGTTCCTCGTGGGTTGTTACGGACCGTGGAGCGGTTGTTTGAGCGTTTTGCAGCGGCACTCCCCAATCCTAGGACTGACTATACTGTGGAGCGTGCCAGACGCCATGGGGCGTATACTTTCTCTAGTGCTCCTACGGAGTCCGTAGCAGGAGACTGGATTACCCGCATGGAGAGAGTATTTGAGTCCTTGGGCTGTCCAGCTGCTAGGAGGGTTCCTTTGGCTATTGACCTCCTAGACGGGGATGCATGGCTTTGGTGGCAGGGTACCAGGAATATGGGTTATGACCCAACTACCATGACTTGGGAAGAGTTCAAAACGGAGTTCTCAAATCGGTACTATAATCAGGCATCCCAGCACCGTCTCCGATTTGAGTTCATGCAGTTGAAGCAGACTGAGGAGATGACTGTGTTACAGTATGAGGAGCGTTTCATTGCTTTGTCTCGGTTTGCCCCTGAGTTGGTGGCGACAGAAAAGTTGAAGGTTGATCAGTTTATCAATGGCCTTCTACCTGTATATCGGGATTGGTTGGCGCCTCATGATTATCCGACTTTTAAGTTAGCTGTGGAGGCTGCTATGAGGTGTGAGGCTAGATATCTGGACGGTTCCCGACCTTTGGAGATTGGCGGTCCCAGTCAGGGGCCATCTAAGAGAATTGCCTCTAGTTCGGGTTCTGCATCGTCATCAGGCAGTAGACCGAGCAGTTCAGATTCTAGCTCTCGTCAGCGTTTCAGGGGACGCTTCAGGAGGCCTGGGCAGACCGGTAGGAGACAGTCCAGGGGTGGCACTGCTAGTTCCAGTGGAGGCTTTGGTAGACAGGCGATTTCGAGAGACTATCCCCAGTGTGCTACTTGTGGTAGACACCATGCAGGCCCGTGTCAGGCAGGTGTGGGGACTTGTTACCAATGTGGCCAGTGGGGTCACTACAGGAGGGAATGCCCTCAGTTGACCCAGGGAGTCTTCACTACTACTAGTCAGAGTATGGGTCAGACCTCTGTGGGTGCTACTAGTTCAGGCTCTCATGGCAGTTTATCAGGCAGGAGCAGCACTCAGTCGGGTCGTGGACAGAGAGGGCGTCCAGTGACCCAGGCCCGTCTTCATGCTATGACCCAGCAGGAGGGTCGCACTGCACCGAACGTCATTATGGGACGTACTGAGCCCTCGAGCGAGGAGGACACAGACAGGCAGCAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

461

Amino Acids

51.2

Weight (kDa)

9.72

Isoelectric Point (pI)

57.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 140 - 259 9.7e-09 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 141 - 233 2.3e-15 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1064
Acc36I ACCTGC 1 cut(s) 1064
Acc65I GGTACC 1 cut(s) 455
AccB1I GGYRCC 2 cut(s) 455, 721
AccB7I CCANNNNNTGG 1 cut(s) 492
AccBSI CCGCTC 1 cut(s) 223
AccI GTMKAC 4 cut(s) 305, 883, 1003, 1048
AciI CCGC 5 cut(s) 168, 223, 245, 355, 816
AcoI YGGCCR 1 cut(s) 1099
AcuI CTGAAG 1 cut(s) 916
AcyI GRCGYC 3 cut(s) 292, 722, 1264
AfaI GTAC 3 cut(s) 457, 527, 1342
AfeI AGCGCT 1 cut(s) 99
AgeI ACCGGT 1 cut(s) 950
AgsI TTSAA 4 cut(s) 39, 505, 577, 670
AhlI ACTAGT 2 cut(s) 1160, 1196
AjnI CCWGG 7 cut(s) 21, 73, 458, 940, 965, 1140, 1275
AluBI AGCT 3 cut(s) 392, 752, 906
AluI AGCT 3 cut(s) 392, 752, 906
Alw21I GWGCWC 1 cut(s) 322
Alw26I GTCTC 6 cut(s) 121, 336, 557, 636, 952, 1014
Ama87I CYCGRG 1 cut(s) 1351
Aor51HI AGCGCT 1 cut(s) 99
AoxI GGCC 7 cut(s) 25, 691, 830, 938, 1060, 1099, 1278
ApaI GGGCCC 1 cut(s) 29
ApeKI GCWGC 5 cut(s) 242, 392, 761, 1233, 1375
AsiGI ACCGGT 1 cut(s) 950
Asp718I GGTACC 1 cut(s) 455
AspA2I CCTAGG 1 cut(s) 260
AspLEI GCGC 2 cut(s) 100, 724
AspS9I GGNCC 7 cut(s) 25, 26, 213, 818, 830, 1061, 1279
AsuC2I CCSGG 1 cut(s) 132
AsuHPI GGTGA 2 cut(s) 156, 191
AvaI CYCGRG 1 cut(s) 1351
AvaII GGWCC 2 cut(s) 213, 818
AvrII CCTAGG 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 29
BalI TGGCCA 1 cut(s) 1101
BanI GGYRCC 2 cut(s) 455, 721
BanII GRGCYC 2 cut(s) 29, 1350
BauI CACGAG 2 cut(s) 144, 198
BbsI GAAGAC 2 cut(s) 1141, 1277
Bbv12I GWGCWC 1 cut(s) 322
BbvI GCAGC 4 cut(s) 254, 379, 748, 1245
BccI CCATC 1 cut(s) 841
BcgI CGANNNNNNTGC 4 cut(s) 179, 213, 1292, 1326
BciT130I CCWGG 7 cut(s) 23, 75, 460, 942, 967, 1142, 1277
BclI TGATCA 1 cut(s) 676
BcnI CCSGG 1 cut(s) 132
BcoDI GTCTC 6 cut(s) 121, 336, 557, 636, 952, 1014
BcuI ACTAGT 2 cut(s) 1160, 1196
BfmI CTRYAG 1 cut(s) 1114
BfoI RGCGCY 2 cut(s) 101, 725
BfuAI ACCTGC 1 cut(s) 1064
BglII AGATCT 1 cut(s) 140
BisI GCNGC 6 cut(s) 243, 246, 393, 762, 1234, 1376
BlnI CCTAGG 1 cut(s) 260
BlsI GCNGC 6 cut(s) 244, 247, 394, 763, 1235, 1377
Bme1390I CCNGG 8 cut(s) 23, 75, 132, 460, 942, 967, 1142, 1277
Bme18I GGWCC 2 cut(s) 213, 818
BmeT110I CYCGRG 1 cut(s) 1351
BmgT120I GGNCC 7 cut(s) 25, 26, 213, 818, 830, 1061, 1279
BmiI GGNNCC 8 cut(s) 27, 158, 405, 457, 723, 796, 820, 831
BmrFI CCNGG 8 cut(s) 23, 75, 132, 460, 942, 967, 1142, 1277
BmrI ACTGGG 2 cut(s) 816, 1024
BmsI GCATC 3 cut(s) 424, 548, 875
BmuI ACTGGG 2 cut(s) 816, 1024
BpiI GAAGAC 2 cut(s) 1141, 1277
BplI GAGNNNNNCTC 2 cut(s) 1222, 1254
BpuEI CTTGAG 1 cut(s) 64
BpuMI CCSGG 1 cut(s) 132
BsaHI GRCGYC 3 cut(s) 292, 722, 1264
BsaI GGTCTC 1 cut(s) 121
BsaWI WCCGGW 1 cut(s) 950
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bse118I RCCGGY 1 cut(s) 950
Bse1I ACTGG 6 cut(s) 350, 822, 987, 1030, 1102, 1268
Bse3DI GCAATG 1 cut(s) 621
BseBI CCWGG 7 cut(s) 23, 75, 460, 942, 967, 1142, 1277
BseGI GGATG 2 cut(s) 439, 539
BseMI GCAATG 1 cut(s) 621
BseMII CTCAG 5 cut(s) 576, 636, 1145, 1253, 1335
BseNI ACTGG 6 cut(s) 350, 822, 987, 1030, 1102, 1268
BseRI GAGGAG 3 cut(s) 602, 626, 1373
BseSI GKGCMC 1 cut(s) 29
BseXI GCAGC 4 cut(s) 254, 379, 748, 1245
BseYI CCCAGC 2 cut(s) 543, 1299
BsgI GTGCAG 1 cut(s) 1302
BshFI GGCC 7 cut(s) 27, 693, 832, 940, 1062, 1101, 1280
BshNI GGYRCC 2 cut(s) 455, 721
BshTI ACCGGT 1 cut(s) 950
BsiHKAI GWGCWC 1 cut(s) 322
BsiHKCI CYCGRG 1 cut(s) 1351
BsiSI CCGG 2 cut(s) 132, 951
BslFI GGGAC 4 cut(s) 804, 939, 1096, 1350
BsmAI GTCTC 6 cut(s) 121, 336, 557, 636, 952, 1014
BsmBI CGTCTC 1 cut(s) 557
BsmFI GGGAC 4 cut(s) 804, 939, 1096, 1350
BsmI GAATGC 1 cut(s) 1130
BsnI GGCC 7 cut(s) 27, 693, 832, 940, 1062, 1101, 1280
Bso31I GGTCTC 1 cut(s) 121
BsoBI CYCGRG 1 cut(s) 1351
Bsp120I GGGCCC 1 cut(s) 25
Bsp1286I GDGCHC 3 cut(s) 29, 322, 1350
Bsp143I GATC 2 cut(s) 140, 676
Bsp19I CCATGG 1 cut(s) 295
BspACI CCGC 5 cut(s) 168, 223, 245, 355, 816
BspANI GGCC 7 cut(s) 27, 693, 832, 940, 1062, 1101, 1280
BspCNI CTCAG 5 cut(s) 577, 637, 1144, 1252, 1336
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 8 cut(s) 27, 158, 405, 457, 723, 796, 820, 831
BspMI ACCTGC 1 cut(s) 1064
BspT107I GGYRCC 2 cut(s) 455, 721
BspTNI GGTCTC 1 cut(s) 121
BsrBI CCGCTC 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 621
BsrFI RCCGGY 1 cut(s) 950
BsrI ACTGG 6 cut(s) 350, 822, 987, 1030, 1102, 1268
BssAI RCCGGY 1 cut(s) 950
BssMI GATC 2 cut(s) 140, 676
BssNAI GTATAC 1 cut(s) 306
BssNI GRCGYC 3 cut(s) 292, 722, 1264
BssSI CACGAG 2 cut(s) 144, 198
BssT1I CCWWGG 3 cut(s) 260, 295, 378
Bst1107I GTATAC 1 cut(s) 306
Bst2BI CACGAG 2 cut(s) 144, 198
Bst2UI CCWGG 7 cut(s) 23, 75, 460, 942, 967, 1142, 1277
Bst4CI ACNGT 7 cut(s) 217, 277, 551, 598, 606, 794, 963
Bst6I CTCTTC 1 cut(s) 492
BstACI GRCGYC 3 cut(s) 292, 722, 1264
BstAPI GCANNNNNTGC 1 cut(s) 67
BstC8I GCNNGC 3 cut(s) 151, 285, 1060
BstDEI CTNAG 6 cut(s) 585, 645, 837, 1131, 1239, 1344
BstDSI CCRYGG 2 cut(s) 216, 295
BstF5I GGATG 2 cut(s) 439, 539
BstH2I RGCGCY 2 cut(s) 101, 725
BstHHI GCGC 2 cut(s) 100, 724
BstKTI GATC 2 cut(s) 143, 679
BstMAI GTCTC 6 cut(s) 121, 336, 557, 636, 952, 1014
BstMBI GATC 2 cut(s) 140, 676
BstMWI GCNNNNNNNGC 6 cut(s) 67, 448, 577, 758, 1212, 1233
BstNI CCWGG 7 cut(s) 23, 75, 460, 942, 967, 1142, 1277
BstNSI RCATGY 1 cut(s) 194
BstSCI CCNGG 8 cut(s) 21, 73, 130, 458, 940, 965, 1140, 1275
BstSFI CTRYAG 1 cut(s) 1114
BstSLI GKGCMC 1 cut(s) 29
BstV1I GCAGC 4 cut(s) 254, 379, 748, 1245
BstV2I GAAGAC 2 cut(s) 1141, 1277
BstX2I RGATCY 1 cut(s) 140
BstXI CCANNNNNNTGG 1 cut(s) 466
BstYI RGATCY 1 cut(s) 140
BstZ17I GTATAC 1 cut(s) 306
BsuRI GGCC 7 cut(s) 27, 693, 832, 940, 1062, 1101, 1280
BtgI CCRYGG 2 cut(s) 216, 295
BtsCI GGATG 2 cut(s) 439, 539
BtsI GCAGTG 2 cut(s) 975, 1314
BtsIMutI CAGTG 6 cut(s) 975, 994, 1037, 1109, 1275, 1314
BveI ACCTGC 1 cut(s) 1064
Cac8I GCNNGC 3 cut(s) 151, 285, 1060
CciI TCATGA 1 cut(s) 727
CfoI GCGC 2 cut(s) 100, 724
Cfr10I RCCGGY 1 cut(s) 950
Cfr13I GGNCC 7 cut(s) 25, 26, 213, 818, 830, 1061, 1279
CpoI CGGWCCG 1 cut(s) 213
CseI GACGC 5 cut(s) 59, 144, 300, 936, 1253
Csp6I GTAC 3 cut(s) 456, 526, 1341
CspAI ACCGGT 1 cut(s) 950
CspI CGGWCCG 1 cut(s) 213
CviQI GTAC 3 cut(s) 456, 526, 1341
DdeI CTNAG 6 cut(s) 585, 645, 837, 1131, 1239, 1344
DinI GGCGCC 1 cut(s) 723
DpnI GATC 2 cut(s) 142, 678
DpnII GATC 2 cut(s) 140, 676
EaeI YGGCCR 1 cut(s) 1099
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Eco130I CCWWGG 3 cut(s) 260, 295, 378
Eco147I AGGCCT 1 cut(s) 940
Eco24I GRGCYC 2 cut(s) 29, 1350
Eco31I GGTCTC 1 cut(s) 121
Eco32I GATATC 1 cut(s) 785
Eco47I GGWCC 2 cut(s) 213, 818
Eco47III AGCGCT 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 916
Eco88I CYCGRG 1 cut(s) 1351
EcoO109I RGGNCCY 1 cut(s) 26
EcoRII CCWGG 7 cut(s) 21, 73, 458, 940, 965, 1140, 1275
EcoRV GATATC 1 cut(s) 785
EcoT14I CCWWGG 3 cut(s) 260, 295, 378
EcoT22I ATGCAT 1 cut(s) 439
EcoT38I GRGCYC 2 cut(s) 29, 1350
EgeI GGCGCC 1 cut(s) 723
EheI GGCGCC 1 cut(s) 723
ErhI CCWWGG 3 cut(s) 260, 295, 378
Esp3I CGTCTC 1 cut(s) 557
FaqI GGGAC 4 cut(s) 804, 939, 1096, 1350
FauI CCCGC 2 cut(s) 175, 362
FbaI TGATCA 1 cut(s) 676
FblI GTMKAC 4 cut(s) 305, 883, 1003, 1048
Fnu4HI GCNGC 6 cut(s) 243, 246, 393, 762, 1234, 1376
FokI GGATG 2 cut(s) 446, 526
FriOI GRGCYC 2 cut(s) 29, 1350
Fsp4HI GCNGC 6 cut(s) 243, 246, 393, 762, 1234, 1376
GlaI GCGC 2 cut(s) 99, 723
GluI GCNGC 6 cut(s) 243, 246, 393, 762, 1234, 1376
GsaI CCCAGC 2 cut(s) 547, 1303
HaeII RGCGCY 2 cut(s) 101, 725
HaeIII GGCC 7 cut(s) 27, 693, 832, 940, 1062, 1101, 1280
HapII CCGG 2 cut(s) 132, 951
HgaI GACGC 5 cut(s) 59, 144, 300, 936, 1253
HhaI GCGC 2 cut(s) 100, 724
Hin1I GRCGYC 3 cut(s) 292, 722, 1264
Hin6I GCGC 2 cut(s) 98, 722
HinP1I GCGC 2 cut(s) 98, 722
HincII GTYRAC 1 cut(s) 1137
HindII GTYRAC 1 cut(s) 1137
HinfI GANTC 5 cut(s) 92, 329, 374, 899, 1146
HpaII CCGG 2 cut(s) 132, 951
HphI GGTGA 2 cut(s) 156, 191
Hpy166II GTNNAC 6 cut(s) 306, 884, 1004, 1049, 1137, 1253
Hpy188I TCNGA 6 cut(s) 55, 557, 738, 898, 1167, 1179
Hpy188III TCNNGA 7 cut(s) 81, 710, 728, 788, 798, 934, 1017
Hpy8I GTNNAC 6 cut(s) 306, 884, 1004, 1049, 1137, 1253
HpyAV CCTTC 3 cut(s) 39, 664, 704
HpyCH4III ACNGT 7 cut(s) 217, 277, 551, 598, 606, 794, 963
HpyCH4IV ACGT 2 cut(s) 1326, 1339
HpyCH4V TGCA 7 cut(s) 61, 242, 437, 571, 866, 1058, 1319
HpyF10VI GCNNNNNNNGC 6 cut(s) 67, 448, 577, 758, 1212, 1233
HpyF3I CTNAG 6 cut(s) 585, 645, 837, 1131, 1239, 1344
HpySE526I ACGT 2 cut(s) 1326, 1339
Hsp92I GRCGYC 3 cut(s) 292, 722, 1264
HspAI GCGC 2 cut(s) 98, 722
KasI GGCGCC 1 cut(s) 721
KpnI GGTACC 1 cut(s) 459
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 2 cut(s) 140, 676
LmnI GCTCC 5 cut(s) 220, 280, 325, 613, 1230
Lsp1109I GCAGC 4 cut(s) 254, 379, 748, 1245
LweI GCATC 3 cut(s) 424, 548, 875
MaeII ACGT 2 cut(s) 1326, 1339
MaeIII GTNAC 5 cut(s) 207, 600, 1088, 1109, 1270
MalI GATC 2 cut(s) 142, 678
MbiI CCGCTC 1 cut(s) 223
MboI GATC 2 cut(s) 140, 676
MboII GAAGA 3 cut(s) 509, 1141, 1277
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 3 cut(s) 29, 322, 1350
MlsI TGGCCA 1 cut(s) 1101
MluCI AATT 1 cut(s) 843
MluNI TGGCCA 1 cut(s) 1101
Mly113I GGCGCC 1 cut(s) 722
MlyI GAGTC 3 cut(s) 338, 383, 1155
MmeI TCCRAC 1 cut(s) 761
Mox20I TGGCCA 1 cut(s) 1101
Mph1103I ATGCAT 1 cut(s) 439
MscI TGGCCA 1 cut(s) 1101
MseI TTAA 1 cut(s) 744
Msp20I TGGCCA 1 cut(s) 1101
MspA1I CMGCKG 2 cut(s) 245, 392
MspI CCGG 2 cut(s) 132, 951
MspR9I CCNGG 8 cut(s) 23, 75, 132, 460, 942, 967, 1142, 1277
Mva1269I GAATGC 1 cut(s) 1130
MvaI CCWGG 7 cut(s) 23, 75, 460, 942, 967, 1142, 1277
MwoI GCNNNNNNNGC 6 cut(s) 67, 448, 577, 758, 1212, 1233
NarI GGCGCC 1 cut(s) 722
NciI CCSGG 1 cut(s) 132
NcoI CCATGG 1 cut(s) 295
NdeII GATC 2 cut(s) 140, 676
NlaIV GGNNCC 8 cut(s) 27, 158, 405, 457, 723, 796, 820, 831
NmuCI GTSAC 2 cut(s) 1109, 1270
NsiI ATGCAT 1 cut(s) 439
NspI RCATGY 1 cut(s) 194
PaeR7I CTCGAG 1 cut(s) 1351
PagI TCATGA 1 cut(s) 727
PaqCI CACCTGC 1 cut(s) 1064
PasI CCCWGGG 2 cut(s) 22, 1141
PceI AGGCCT 1 cut(s) 940
PcsI WCGNNNNNNNCGW 1 cut(s) 142
PctI GAATGC 1 cut(s) 1130
PfeI GAWTC 2 cut(s) 92, 899
PflMI CCANNNNNTGG 1 cut(s) 492
PinAI ACCGGT 1 cut(s) 950
PkrI GCNGC 6 cut(s) 244, 247, 394, 763, 1235, 1377
PleI GAGTC 3 cut(s) 337, 382, 1154
PluTI GGCGCC 1 cut(s) 725
PpsI GAGTC 3 cut(s) 337, 382, 1154
Psp6I CCWGG 7 cut(s) 21, 73, 458, 940, 965, 1140, 1275
PspFI CCCAGC 2 cut(s) 543, 1299
PspGI CCWGG 7 cut(s) 21, 73, 458, 940, 965, 1140, 1275
PspN4I GGNNCC 8 cut(s) 27, 158, 405, 457, 723, 796, 820, 831
PspOMI GGGCCC 1 cut(s) 25
PspPI GGNCC 7 cut(s) 25, 26, 213, 818, 830, 1061, 1279
PspXI VCTCGAGB 1 cut(s) 1351
PsuI RGATCY 1 cut(s) 140
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 3 cut(s) 457, 527, 1342
RsaNI GTAC 3 cut(s) 456, 526, 1341
Rsr2I CGGWCCG 1 cut(s) 213
RsrII CGGWCCG 1 cut(s) 213
SaqAI TTAA 1 cut(s) 744
SatI GCNGC 6 cut(s) 243, 246, 393, 762, 1234, 1376
Sau3AI GATC 2 cut(s) 140, 676
Sau96I GGNCC 7 cut(s) 25, 26, 213, 818, 830, 1061, 1279
SchI GAGTC 3 cut(s) 338, 383, 1155
ScrFI CCNGG 8 cut(s) 23, 75, 132, 460, 942, 967, 1142, 1277
SduI GDGCHC 3 cut(s) 29, 322, 1350
SfaNI GCATC 3 cut(s) 424, 548, 875
SfcI CTRYAG 1 cut(s) 1114
SfoI GGCGCC 1 cut(s) 723
Sfr274I CTCGAG 1 cut(s) 1351
SinI GGWCC 2 cut(s) 213, 818
SlaI CTCGAG 1 cut(s) 1351
SmlI CTYRAG 2 cut(s) 79, 1351
SmoI CTYRAG 2 cut(s) 79, 1351
SpeI ACTAGT 2 cut(s) 1160, 1196
Sse9I AATT 1 cut(s) 843
SseBI AGGCCT 1 cut(s) 940
SsiI CCGC 5 cut(s) 168, 223, 245, 355, 816
SspDI GGCGCC 1 cut(s) 721
StuI AGGCCT 1 cut(s) 940
StyD4I CCNGG 8 cut(s) 21, 73, 130, 458, 940, 965, 1140, 1275
StyI CCWWGG 3 cut(s) 260, 295, 378
TaaI ACNGT 7 cut(s) 217, 277, 551, 598, 606, 794, 963
TaiI ACGT 2 cut(s) 1329, 1342
TaqI TCGA 2 cut(s) 1016, 1352
TaqII GACCGA 1 cut(s) 901
TasI AATT 1 cut(s) 843
TauI GCSGC 1 cut(s) 248
TfiI GAWTC 2 cut(s) 92, 899
Tru1I TTAA 1 cut(s) 744
Tru9I TTAA 1 cut(s) 744
TscAI CASTG 6 cut(s) 982, 994, 1037, 1109, 1275, 1321
TseFI GTSAC 2 cut(s) 1109, 1270
TseI GCWGC 5 cut(s) 242, 392, 761, 1233, 1375
Tsp45I GTSAC 2 cut(s) 1109, 1270
TspDTI ATGAA 3 cut(s) 556, 610, 1277
TspGWI ACGGA 6 cut(s) 93, 103, 226, 322, 341, 524
TspRI CASTG 6 cut(s) 982, 994, 1037, 1109, 1275, 1321
Van91I CCANNNNNTGG 1 cut(s) 492
VpaK11BI GGWCC 2 cut(s) 213, 818
XceI RCATGY 1 cut(s) 194
XhoI CTCGAG 1 cut(s) 1351
XmaJI CCTAGG 1 cut(s) 260
XmiI GTMKAC 4 cut(s) 305, 883, 1003, 1048
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.