Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000094

Physical Location & Seq

Genomic Coordinates Reverse (-)

19059865 .. 19065803

Gene Structure 5939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGGCCGTAAGGCTGCCAAAACACCACCACGGCCGGTGGAAGTTAGTGGAGTTTGTTATCGAGGTGACACTAGGTTTGATACCTATATTAATGACGCCTTATTGGATGACACCAACTGAACTTAAGGAGTTGAAGGTTCAAGGTGAAAGTTTACTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

53

Amino Acids

6.21

Weight (kDa)

6.83

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42190
fragaria_vesca	FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica	MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica	Prupe.7G030900_v2.0.a1
pyrus_communis	pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis	RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora	Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii	Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa	Rorug06G0233600
rosa_samantha	Rh3CG302700 Rh6DG286700
rosa_wichuraiana	Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	2 cut(s)	3, 31
AcyI	GRCGYC	1 cut(s)	95
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	133, 140
AoxI	GGCC	2 cut(s)	3, 31
ApeKI	GCWGC	1 cut(s)	13
ArsI	GACNNNNNNTTYG	2 cut(s)	58, 90
AseI	ATTAAT	1 cut(s)	89
AsuHPI	GGTGA	2 cut(s)	76, 155
BceAI	ACGGC	1 cut(s)	46
BfaI	CTAG	1 cut(s)	71
BfrI	CTTAAG	1 cut(s)	122
BisI	GCNGC	1 cut(s)	14
BlsI	GCNGC	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	28
Bse118I	RCCGGY	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	111
BseX3I	CGGCCG	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	2 cut(s)	5, 33
BsiEI	CGRYCG	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	34
BsnI	GGCC	2 cut(s)	5, 33
BspANI	GGCC	2 cut(s)	5, 33
BspTI	CTTAAG	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	33
BssAI	RCCGGY	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	28
BssNI	GRCGYC	1 cut(s)	95
BstACI	GRCGYC	1 cut(s)	95
BstAFI	CTTAAG	1 cut(s)	122
BstDSI	CCRYGG	1 cut(s)	28
BstF5I	GGATG	1 cut(s)	111
BstMCI	CGRYCG	1 cut(s)	34
BstZI	CGGCCG	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	5, 33
BtgI	CCRYGG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	111
Cfr10I	RCCGGY	1 cut(s)	33
CseI	GACGC	1 cut(s)	103
CviJI	RGCY	3 cut(s)	5, 13, 33
CviKI_1	RGCY	3 cut(s)	5, 13, 33
EaeI	YGGCCR	2 cut(s)	3, 31
EagI	CGGCCG	1 cut(s)	31
EclXI	CGGCCG	1 cut(s)	31
Eco52I	CGGCCG	1 cut(s)	31
FaiI	YATR	1 cut(s)	86
Fnu4HI	GCNGC	1 cut(s)	14
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	1 cut(s)	14
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	1 cut(s)	14
HaeIII	GGCC	2 cut(s)	5, 33
HapII	CCGG	1 cut(s)	34
HgaI	GACGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	95
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	2 cut(s)	76, 155
Hpy166II	GTNNAC	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	127
Hsp92I	GRCGYC	1 cut(s)	95
LpnPI	CCDG	1 cut(s)	47
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	64
MnlI	CCTC	1 cut(s)	55
MseI	TTAA	2 cut(s)	89, 123
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	15
PshBI	ATTAAT	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	89, 123
SatI	GCNGC	1 cut(s)	14
SetI	ASST	5 cut(s)	66, 76, 85, 138, 145
SgeI	CNNG	5 cut(s)	41, 46, 73, 83, 152
SmlI	CTYRAG	2 cut(s)	122, 155
SmoI	CTYRAG	2 cut(s)	122, 155
SspMI	CTAG	1 cut(s)	71
TaqI	TCGA	1 cut(s)	60
Tru1I	TTAA	2 cut(s)	89, 123
Tru9I	TTAA	2 cut(s)	89, 123
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	64
Vha464I	CTTAAG	1 cut(s)	122
VspI	ATTAAT	1 cut(s)	89
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.