transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| rve | PF00665 | 41 - 135 | 6.4e-06 | Integrase core domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 295, 553 |
| AccBSI | CCGCTC | 1 cut(s) | 427 |
| AciI | CCGC | 2 cut(s) | 427, 605 |
| AclWI | GGATC | 2 cut(s) | 317, 501 |
| AfaI | GTAC | 3 cut(s) | 239, 373, 391 |
| AgsI | TTSAA | 2 cut(s) | 339, 478 |
| AjnI | CCWGG | 1 cut(s) | 73 |
| AluBI | AGCT | 2 cut(s) | 163, 625 |
| AluI | AGCT | 2 cut(s) | 163, 625 |
| Alw26I | GTCTC | 1 cut(s) | 277 |
| AlwI | GGATC | 2 cut(s) | 317, 501 |
| AoxI | GGCC | 2 cut(s) | 71, 578 |
| AspS9I | GGNCC | 2 cut(s) | 193, 632 |
| AsuHPI | GGTGA | 7 cut(s) | 64, 196, 392, 442, 488, 582, 626 |
| AvaII | GGWCC | 2 cut(s) | 193, 632 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 526, 559 |
| BanI | GGYRCC | 2 cut(s) | 295, 553 |
| BbvCI | CCTCAGC | 1 cut(s) | 455 |
| BccI | CCATC | 1 cut(s) | 407 |
| BceAI | ACGGC | 1 cut(s) | 565 |
| BciT130I | CCWGG | 1 cut(s) | 75 |
| BcoDI | GTCTC | 1 cut(s) | 277 |
| BfaI | CTAG | 1 cut(s) | 540 |
| Bme1390I | CCNGG | 1 cut(s) | 75 |
| Bme18I | GGWCC | 2 cut(s) | 193, 632 |
| BmgT120I | GGNCC | 2 cut(s) | 193, 632 |
| BmiI | GGNNCC | 3 cut(s) | 297, 555, 633 |
| BmrFI | CCNGG | 1 cut(s) | 75 |
| BmsI | GCATC | 3 cut(s) | 73, 163, 238 |
| BpmI | CTGGAG | 1 cut(s) | 96 |
| Bpu10I | CCTNAGC | 1 cut(s) | 455 |
| BsaBI | GATNNNNATC | 1 cut(s) | 321 |
| BsaJI | CCNNGG | 1 cut(s) | 366 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 568, 598 |
| Bse1I | ACTGG | 1 cut(s) | 148 |
| Bse8I | GATNNNNATC | 1 cut(s) | 321 |
| BseBI | CCWGG | 1 cut(s) | 75 |
| BseDI | CCNNGG | 1 cut(s) | 366 |
| BseJI | GATNNNNATC | 1 cut(s) | 321 |
| BseMII | CTCAG | 3 cut(s) | 414, 419, 446 |
| BseNI | ACTGG | 1 cut(s) | 148 |
| BshFI | GGCC | 2 cut(s) | 73, 580 |
| BshNI | GGYRCC | 2 cut(s) | 295, 553 |
| BsmAI | GTCTC | 1 cut(s) | 277 |
| BsnI | GGCC | 2 cut(s) | 73, 580 |
| Bsp1407I | TGTACA | 1 cut(s) | 237 |
| Bsp143I | GATC | 4 cut(s) | 316, 322, 493, 587 |
| Bsp19I | CCATGG | 1 cut(s) | 366 |
| BspACI | CCGC | 2 cut(s) | 427, 605 |
| BspANI | GGCC | 2 cut(s) | 73, 580 |
| BspCNI | CTCAG | 3 cut(s) | 415, 418, 447 |
| BspLI | GGNNCC | 3 cut(s) | 297, 555, 633 |
| BspPI | GGATC | 2 cut(s) | 317, 501 |
| BspT107I | GGYRCC | 2 cut(s) | 295, 553 |
| BsrBI | CCGCTC | 1 cut(s) | 427 |
| BsrGI | TGTACA | 1 cut(s) | 237 |
| BsrI | ACTGG | 1 cut(s) | 148 |
| BssECI | CCNNGG | 1 cut(s) | 366 |
| BssMI | GATC | 4 cut(s) | 316, 322, 493, 587 |
| BssT1I | CCWWGG | 1 cut(s) | 366 |
| Bst2UI | CCWGG | 1 cut(s) | 75 |
| Bst4CI | ACNGT | 2 cut(s) | 197, 244 |
| BstAUI | TGTACA | 1 cut(s) | 237 |
| BstDEI | CTNAG | 6 cut(s) | 30, 153, 379, 405, 423, 455 |
| BstDSI | CCRYGG | 1 cut(s) | 366 |
| BstKTI | GATC | 4 cut(s) | 319, 325, 496, 590 |
| BstMAI | GTCTC | 1 cut(s) | 277 |
| BstMBI | GATC | 4 cut(s) | 316, 322, 493, 587 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 70, 424 |
| BstNI | CCWGG | 1 cut(s) | 75 |
| BstSCI | CCNGG | 1 cut(s) | 73 |
| BstX2I | RGATCY | 1 cut(s) | 322 |
| BstYI | RGATCY | 1 cut(s) | 322 |
| BsuRI | GGCC | 2 cut(s) | 73, 580 |
| BtgI | CCRYGG | 1 cut(s) | 366 |
| Cfr13I | GGNCC | 2 cut(s) | 193, 632 |
| Csp6I | GTAC | 3 cut(s) | 238, 372, 390 |
| CviAII | CATG | 6 cut(s) | 170, 290, 367, 385, 469, 550 |
| CviJI | RGCY | 7 cut(s) | 73, 91, 163, 365, 461, 580, 625 |
| CviKI_1 | RGCY | 7 cut(s) | 73, 91, 163, 365, 461, 580, 625 |
| CviQI | GTAC | 3 cut(s) | 238, 372, 390 |
| DdeI | CTNAG | 6 cut(s) | 30, 153, 379, 405, 423, 455 |
| DpnI | GATC | 4 cut(s) | 318, 324, 495, 589 |
| DpnII | GATC | 4 cut(s) | 316, 322, 493, 587 |
| EciI | GGCGGA | 1 cut(s) | 620 |
| Eco130I | CCWWGG | 1 cut(s) | 366 |
| Eco147I | AGGCCT | 1 cut(s) | 73 |
| Eco47I | GGWCC | 2 cut(s) | 193, 632 |
| EcoO109I | RGGNCCY | 1 cut(s) | 632 |
| EcoRII | CCWGG | 1 cut(s) | 73 |
| EcoT14I | CCWWGG | 1 cut(s) | 366 |
| ErhI | CCWWGG | 1 cut(s) | 366 |
| FaeI | CATG | 6 cut(s) | 173, 293, 370, 388, 472, 553 |
| FatI | CATG | 6 cut(s) | 169, 289, 366, 384, 468, 549 |
| FauI | CCCGC | 1 cut(s) | 420 |
| FauNDI | CATATG | 1 cut(s) | 559 |
| FspBI | CTAG | 1 cut(s) | 540 |
| GsuI | CTGGAG | 1 cut(s) | 96 |
| HaeIII | GGCC | 2 cut(s) | 73, 580 |
| Hin1II | CATG | 6 cut(s) | 173, 293, 370, 388, 472, 553 |
| HincII | GTYRAC | 1 cut(s) | 47 |
| HindII | GTYRAC | 1 cut(s) | 47 |
| HindIII | AAGCTT | 1 cut(s) | 161 |
| HinfI | GANTC | 1 cut(s) | 433 |
| HphI | GGTGA | 7 cut(s) | 64, 196, 392, 442, 488, 582, 626 |
| Hpy166II | GTNNAC | 3 cut(s) | 47, 193, 240 |
| Hpy188I | TCNGA | 3 cut(s) | 316, 360, 408 |
| Hpy188III | TCNNGA | 2 cut(s) | 320, 635 |
| Hpy8I | GTNNAC | 3 cut(s) | 47, 193, 240 |
| HpyAV | CCTTC | 3 cut(s) | 49, 230, 265 |
| HpyCH4III | ACNGT | 2 cut(s) | 197, 244 |
| HpyCH4V | TGCA | 1 cut(s) | 258 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 70, 424 |
| HpyF3I | CTNAG | 6 cut(s) | 30, 153, 379, 405, 423, 455 |
| Hsp92II | CATG | 6 cut(s) | 173, 293, 370, 388, 472, 553 |
| Kzo9I | GATC | 4 cut(s) | 316, 322, 493, 587 |
| LmnI | GCTCC | 1 cut(s) | 118 |
| LpnPI | CCDG | 6 cut(s) | 35, 60, 87, 101, 129, 422 |
| LweI | GCATC | 3 cut(s) | 73, 163, 238 |
| MaeI | CTAG | 1 cut(s) | 540 |
| MaeIII | GTNAC | 1 cut(s) | 139 |
| MalI | GATC | 4 cut(s) | 318, 324, 495, 589 |
| MbiI | CCGCTC | 1 cut(s) | 427 |
| MboI | GATC | 4 cut(s) | 316, 322, 493, 587 |
| MboII | GAAGA | 2 cut(s) | 16, 458 |
| MfeI | CAATTG | 1 cut(s) | 503 |
| MflI | RGATCY | 1 cut(s) | 322 |
| MluCI | AATT | 1 cut(s) | 503 |
| MnlI | CCTC | 8 cut(s) | 71, 414, 450, 484, 509, 556, 570, 601 |
| MseI | TTAA | 1 cut(s) | 646 |
| MspR9I | CCNGG | 1 cut(s) | 75 |
| MunI | CAATTG | 1 cut(s) | 503 |
| MvaI | CCWGG | 1 cut(s) | 75 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 70, 424 |
| NcoI | CCATGG | 1 cut(s) | 366 |
| NdeI | CATATG | 1 cut(s) | 559 |
| NdeII | GATC | 4 cut(s) | 316, 322, 493, 587 |
| NlaIII | CATG | 6 cut(s) | 173, 293, 370, 388, 472, 553 |
| NlaIV | GGNNCC | 3 cut(s) | 297, 555, 633 |
| NmuCI | GTSAC | 1 cut(s) | 139 |
| PceI | AGGCCT | 1 cut(s) | 73 |
| PfeI | GAWTC | 1 cut(s) | 433 |
| PflFI | GACNNNGTC | 1 cut(s) | 205 |
| PpuMI | RGGWCCY | 1 cut(s) | 632 |
| Psp5II | RGGWCCY | 1 cut(s) | 632 |
| Psp6I | CCWGG | 1 cut(s) | 73 |
| PspGI | CCWGG | 1 cut(s) | 73 |
| PspN4I | GGNNCC | 3 cut(s) | 297, 555, 633 |
| PspPI | GGNCC | 2 cut(s) | 193, 632 |
| PspPPI | RGGWCCY | 1 cut(s) | 632 |
| PsuI | RGATCY | 1 cut(s) | 322 |
| PsyI | GACNNNGTC | 1 cut(s) | 205 |
| RsaI | GTAC | 3 cut(s) | 239, 373, 391 |
| RsaNI | GTAC | 3 cut(s) | 238, 372, 390 |
| SaqAI | TTAA | 1 cut(s) | 646 |
| Sau3AI | GATC | 4 cut(s) | 316, 322, 493, 587 |
| Sau96I | GGNCC | 2 cut(s) | 193, 632 |
| ScrFI | CCNGG | 1 cut(s) | 75 |
| SetI | ASST | 9 cut(s) | 54, 82, 165, 380, 441, 501, 595, 612, 627 |
| SfaNI | GCATC | 3 cut(s) | 73, 163, 238 |
| SinI | GGWCC | 2 cut(s) | 193, 632 |
| Sse9I | AATT | 1 cut(s) | 503 |
| SseBI | AGGCCT | 1 cut(s) | 73 |
| SsiI | CCGC | 2 cut(s) | 427, 605 |
| SspMI | CTAG | 1 cut(s) | 540 |
| StuI | AGGCCT | 1 cut(s) | 73 |
| StyD4I | CCNGG | 1 cut(s) | 73 |
| StyI | CCWWGG | 1 cut(s) | 366 |
| TaaI | ACNGT | 2 cut(s) | 197, 244 |
| TaqI | TCGA | 3 cut(s) | 230, 305, 319 |
| TasI | AATT | 1 cut(s) | 503 |
| TatI | WGTACW | 2 cut(s) | 237, 389 |
| TfiI | GAWTC | 1 cut(s) | 433 |
| Tru1I | TTAA | 1 cut(s) | 646 |
| Tru9I | TTAA | 1 cut(s) | 646 |
| TseFI | GTSAC | 1 cut(s) | 139 |
| Tsp45I | GTSAC | 1 cut(s) | 139 |
| TspDTI | ATGAA | 2 cut(s) | 17, 278 |
| Tth111I | GACNNNGTC | 1 cut(s) | 205 |
| VpaK11BI | GGWCC | 2 cut(s) | 193, 632 |
| XspI | CTAG | 1 cut(s) | 540 |