FvH4_3g14392

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000094
Physical Location & Seq
Forward (+)
8888249 .. 8894998
6750 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g14392.t1

Sequence Viewer

Length: 2151 bp
ATGGCGCCCTTTGAGGCTCTTTATGGGAGGCAGTGTCGCACGCCTTTGTGTTGGAATGAAGTAGGGGAAAAAGAGCTTTGTGGCCCAGAGTTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAAGACTGCTCAGAGTAGGCAGAAAAGTTATGCGGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTGGGTGTTCCTGAAATTATCTCCTTGGAAAGGGATTGTGCGTTTCGGTAAGCATGGGAAGCTTAGCCCGAGGTATATTGGCCCTTATGAGATTATAGAGCGAGTTGGCTCACTTGCTTATCGATTAGCCTTGCCTCCAGAGTTAGCTAGGATACATAAAGTGTTTCATGTATCCATGCTTCGCAAGTATATTGCCGATCCTTCTCATGTGCTGCAAGAGCAGCCGATCAGTTTGACGAGAGATTTGACCTATGAAGAGGAACCGGTTCAGATTCTCGACCGAAAGGAGCAAGTGCTTAGGAACAAGACAATCCCGCTTGTCAAGGTGCTGTGGAGAAGTCATCAAGTAGAAGAAGCTACTTGGGAATCAGAGGAACAAATGATGCAGCAGTATCCGTATCTCTTCGGAGGACATAGGGGTTTCGGGGACGATTATGTGCGGAGGATTATTAGTATGAAGAAAATACGACGACGCAAACTTCCGGCCGTCCTCCCGCCGCCGTCCGACCTCCGTTCACCGCCGGACCGGTCCCGTTCGACCGGTGAGAGGAGCCCTAGCGCCGCCGTGAGTGAGCGGTGCCGCCCGAAAGCTTCGACTGCCGAATTGGTTTTTTCGCCGGAACTTCTTCCTCCGGCCACCAATCCGGGCAAGCTTGGTATGGTTTTGGAGGTCGCCGGAATTGACCTCCGGCCGCCGCTGCCGGCGGAGCCGCCGGCGGCGCCGCCGCCGGACGTGAAGAGGCTCGAGCAGACGAGACCCCAGATTGACATCAGGCTTAGGCCTAATTCGGGGTATGGGCACATATTTATACACCCGTCTGTCCACCTTGATGGCGGTGAAATTCGGGGTGGGTCGTGTCAGCGTCAACACCTAATCTCTATCTCTCTCAAATCATTCCAGCTCGCTGTCTCTGTCAAAACTCTCTTCTTCAAGAACTTGCTGTCACGTCAAGACCAAGATTTAACCTTTGATTTTAGCAGATCAGCTCATGTTGAGTTCATGCGAAAGCAGACAGCAGACAACGTATTATCTTTGGATGGCACTTCCTTTATGTCACGGATCCTTAAGGCGTCACAAAACACAAAGCCGACACTCCTCCATAATATAAAACCGTTCGGCGTGTATTTCAAAATCAAAGTCCTTGTGGGGAGAATCTGGACACCTAGAGCATACAACAGTGATGCATTTGATGGTCTGCATTATCTCTTGATTGATGAAACGGGAGATACAATTGAGGGCATCATTGAAGAGGATTACTATCAAAACATGACTAAAACAATGGAAGAAGGAAAGATCTATGAGATTACCAAATTTCACAACAAAAGATATACAGCTACAACGAAATTAGTCAATCATGAAGTCCAGCTCCTCTTTAATAGGTTCACTCAATTTATCGAAGTTGATGAGACAATGTCTCCTCCTCCAAGATATGGATTTCAGCTTCTTCAATATAATGAATTCACAGCTCAACTTCACAAGCAAAAAGTTCTTGCAGATCTTTATGGCTGTATGAAAACCATATCAACAGAATATGAAGTTTCTCTAGATGCAAAGAACAAGACGGTTCGTGAAATAGTGCTTACAAACTTGAGGAGGGAGGAGATAAAAGTCAGCCTTTGGGGTGATCCAGCACAGAATTTAGATGCCGATGCTATTGAACAGATGCCACAGCCATTACCGAGTAACATGACCATTGAAGATGCCACCAATGAAGCAACTGTTACACTAATGGGAAAGGAAGCAGAGAAATTATTCGGTACCATCTGTGAACACTTAGTGAACGAAAGACCTCCTGATGCACAACAAACCCTACCCAAAGAGATTGAAAATACCATTGGTCAGTGCCACCTTTTTGAGATCAAATTCAGCAAATATGGGCAGCGAACAGTGAAACGTATCCTCTCAGATCATCAAATTTCAAAATCTCCAAGAGAGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

717

Amino Acids

82.21

Weight (kDa)

8.92

Isoelectric Point (pI)

54.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_Tf2-1 PF24626 69 - 133 2.2e-27 Tf2-1-like, SH3 domain
DUF223 PF02721 435 - 534 1e-09 Domain of unknown function DUF223
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1967
AccB1I GGYRCC 4 cut(s) 4, 786, 928, 1967
AccB7I CCANNNNNTGG 1 cut(s) 1640
AccBSI CCGCTC 1 cut(s) 784
AclWI GGATC 4 cut(s) 401, 1264, 1277, 1829
AcoI YGGCCR 3 cut(s) 693, 843, 899
AcsI RAATTY 7 cut(s) 194, 1050, 1520, 1667, 1846, 2072, 2124
AcyI GRCGYC 3 cut(s) 5, 929, 1280
AdeI CACNNNGTG 1 cut(s) 1987
AfaI GTAC 1 cut(s) 1969
AfiI CCNNNNNNNGG 4 cut(s) 239, 756, 998, 1640
AflII CTTAAG 1 cut(s) 1274
AgeI ACCGGT 3 cut(s) 472, 735, 749
AjiI CACGTC 2 cut(s) 943, 1157
AjuI GAANNNNNNNTTGG 2 cut(s) 2028, 2060
Alw26I GTCTC 4 cut(s) 958, 1123, 1610, 1629
AlwI GGATC 4 cut(s) 401, 1264, 1277, 1829
Ama87I CYCGRG 2 cut(s) 277, 953
AoxI GGCC 6 cut(s) 82, 289, 693, 843, 899, 989
ApeKI GCWGC 5 cut(s) 421, 430, 595, 907, 2089
ApoI RAATTY 7 cut(s) 194, 1050, 1520, 1667, 1846, 2072, 2124
ArsI GACNNNNNNTTYG 4 cut(s) 436, 468, 1332, 1364
AsiGI ACCGGT 3 cut(s) 472, 735, 749
Asp700I GAANNNNTTC 3 cut(s) 474, 834, 1961
Asp718I GGTACC 1 cut(s) 1967
AspLEI GCGC 3 cut(s) 7, 770, 931
AspS9I GGNCC 4 cut(s) 83, 290, 733, 738
AsuC2I CCSGG 1 cut(s) 855
AsuHPI GGTGA 5 cut(s) 218, 717, 764, 1058, 1844
AvaI CYCGRG 2 cut(s) 277, 953
AvaII GGWCC 2 cut(s) 733, 738
BaeGI GKGCMC 1 cut(s) 1011
BamHI GGATCC 1 cut(s) 1269
BanI GGYRCC 4 cut(s) 4, 786, 928, 1967
BanII GRGCYC 1 cut(s) 764
BarI GAAGNNNNNNTAC 2 cut(s) 372, 404
BbvI GCAGC 5 cut(s) 408, 442, 607, 894, 2101
BccI CCATC 4 cut(s) 1034, 1241, 1394, 1979
BceAI ACGGC 3 cut(s) 680, 694, 758
BciVI GTATCC 4 cut(s) 354, 391, 612, 2117
BcnI CCSGG 1 cut(s) 855
BcoDI GTCTC 4 cut(s) 958, 1123, 1610, 1629
BfaI CTAG 4 cut(s) 357, 765, 1374, 1754
BfoI RGCGCY 3 cut(s) 8, 771, 932
BfrI CTTAAG 1 cut(s) 1274
BfuI GTATCC 4 cut(s) 354, 391, 612, 2117
BglII AGATCT 3 cut(s) 187, 1503, 1705
BlpI GCTNAGC 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 855
Bme18I GGWCC 2 cut(s) 733, 738
BmeT110I CYCGRG 2 cut(s) 277, 953
BmgBI CACGTC 2 cut(s) 943, 1157
BmgT120I GGNCC 4 cut(s) 83, 290, 733, 738
BmiI GGNNCC 9 cut(s) 6, 471, 740, 761, 788, 918, 930, 1271, 1969
BmrFI CCNGG 1 cut(s) 855
BmsI GCATC 9 cut(s) 582, 1381, 1458, 1747, 1843, 1849, 1863, 1900, 1996
BplI GAGNNNNNCTC 2 cut(s) 120, 152
BpmI CTGGAG 1 cut(s) 330
Bpu10I CCTNAGC 2 cut(s) 506, 986
Bpu1102I GCTNAGC 1 cut(s) 272
BpuEI CTTGAG 2 cut(s) 122, 1819
BpuMI CCSGG 1 cut(s) 855
Bsa29I ATCGAT 1 cut(s) 331
BsaBI GATNNNNATC 2 cut(s) 977, 1467
BsaHI GRCGYC 3 cut(s) 5, 929, 1280
BsaI GGTCTC 1 cut(s) 958
BsaJI CCNNGG 2 cut(s) 233, 278
BsaWI WCCGGW 3 cut(s) 472, 735, 749
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 1609, 1639
Bsc4I CCNNNNNNNGG 4 cut(s) 239, 756, 998, 1640
Bse118I RCCGGY 5 cut(s) 472, 735, 749, 910, 922
Bse8I GATNNNNATC 2 cut(s) 977, 1467
BseCI ATCGAT 1 cut(s) 331
BseDI CCNNGG 2 cut(s) 233, 278
BseGI GGATG 2 cut(s) 178, 1252
BseJI GATNNNNATC 2 cut(s) 977, 1467
BseLI CCNNNNNNNGG 4 cut(s) 239, 756, 998, 1640
BseMII CTCAG 2 cut(s) 161, 2127
BseRI GAGGAG 7 cut(s) 772, 1295, 1568, 1617, 1620, 1816, 1823
BseSI GKGCMC 1 cut(s) 1011
BseX3I CGGCCG 2 cut(s) 693, 899
BseXI GCAGC 5 cut(s) 408, 442, 607, 894, 2101
Bsh1285I CGRYCG 4 cut(s) 490, 696, 750, 902
BshFI GGCC 6 cut(s) 84, 291, 695, 845, 901, 991
BshNI GGYRCC 4 cut(s) 4, 786, 928, 1967
BshTI ACCGGT 3 cut(s) 472, 735, 749
BshVI ATCGAT 1 cut(s) 331
BsiEI CGRYCG 4 cut(s) 490, 696, 750, 902
BsiHKCI CYCGRG 2 cut(s) 277, 953
BslFI GGGAC 2 cut(s) 650, 724
BslI CCNNNNNNNGG 4 cut(s) 239, 756, 998, 1640
BsmAI GTCTC 4 cut(s) 958, 1123, 1610, 1629
BsmFI GGGAC 2 cut(s) 650, 724
BsnI GGCC 6 cut(s) 84, 291, 695, 845, 901, 991
Bso31I GGTCTC 1 cut(s) 958
BsoBI CYCGRG 2 cut(s) 277, 953
Bsp1286I GDGCHC 2 cut(s) 764, 1011
Bsp1720I GCTNAGC 1 cut(s) 272
BspANI GGCC 6 cut(s) 84, 291, 695, 845, 901, 991
BspCNI CTCAG 2 cut(s) 160, 2126
BspDI ATCGAT 1 cut(s) 331
BspHI TCATGA 1 cut(s) 1564
BspLI GGNNCC 9 cut(s) 6, 471, 740, 761, 788, 918, 930, 1271, 1969
BspPI GGATC 4 cut(s) 401, 1264, 1277, 1829
BspT107I GGYRCC 4 cut(s) 4, 786, 928, 1967
BspTI CTTAAG 1 cut(s) 1274
BspTNI GGTCTC 1 cut(s) 958
BsrBI CCGCTC 1 cut(s) 784
BsrFI RCCGGY 5 cut(s) 472, 735, 749, 910, 922
BssAI RCCGGY 5 cut(s) 472, 735, 749, 910, 922
BssECI CCNNGG 2 cut(s) 233, 278
BssNI GRCGYC 3 cut(s) 5, 929, 1280
BssT1I CCWWGG 1 cut(s) 233
Bst4CI ACNGT 5 cut(s) 1323, 1388, 1774, 1930, 2098
Bst6I CTCTTC 5 cut(s) 459, 617, 941, 1139, 1452
BstACI GRCGYC 3 cut(s) 5, 929, 1280
BstAFI CTTAAG 1 cut(s) 1274
BstC8I GCNNGC 5 cut(s) 41, 860, 912, 924, 1113
BstDEI CTNAG 6 cut(s) 147, 272, 506, 986, 1984, 2113
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 178, 1252
BstH2I RGCGCY 3 cut(s) 8, 771, 932
BstHHI GCGC 3 cut(s) 7, 770, 931
BstMAI GTCTC 4 cut(s) 958, 1123, 1610, 1629
BstMCI CGRYCG 4 cut(s) 490, 696, 750, 902
BstMWI GCNNNNNNNGC 7 cut(s) 268, 427, 430, 806, 907, 916, 928
BstSCI CCNGG 1 cut(s) 853
BstSLI GKGCMC 1 cut(s) 1011
BstV1I GCAGC 5 cut(s) 408, 442, 607, 894, 2101
BstX2I RGATCY 4 cut(s) 187, 1269, 1503, 1705
BstXI CCANNNNNNTGG 1 cut(s) 1040
BstYI RGATCY 4 cut(s) 187, 1269, 1503, 1705
BstZI CGGCCG 2 cut(s) 693, 899
Bsu15I ATCGAT 1 cut(s) 331
BsuI GTATCC 4 cut(s) 354, 391, 612, 2117
BsuRI GGCC 6 cut(s) 84, 291, 695, 845, 901, 991
BsuTUI ATCGAT 1 cut(s) 331
BtrI CACGTC 2 cut(s) 943, 1157
BtsCI GGATG 2 cut(s) 178, 1252
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 4 cut(s) 38, 1393, 2057, 2103
Cac8I GCNNGC 5 cut(s) 41, 860, 912, 924, 1113
CciI TCATGA 1 cut(s) 1564
CfoI GCGC 3 cut(s) 7, 770, 931
Cfr10I RCCGGY 5 cut(s) 472, 735, 749, 910, 922
Cfr13I GGNCC 4 cut(s) 83, 290, 733, 738
ClaI ATCGAT 1 cut(s) 331
CpoI CGGWCCG 1 cut(s) 733
CseI GACGC 3 cut(s) 690, 1061, 1269
Csp6I GTAC 1 cut(s) 1968
CspAI ACCGGT 3 cut(s) 472, 735, 749
CspI CGGWCCG 1 cut(s) 733
CviQI GTAC 1 cut(s) 1968
DdeI CTNAG 6 cut(s) 147, 272, 506, 986, 1984, 2113
DinI GGCGCC 2 cut(s) 6, 930
DraIII CACNNNGTG 1 cut(s) 1987
EaeI YGGCCR 3 cut(s) 693, 843, 899
EagI CGGCCG 2 cut(s) 693, 899
Eam1104I CTCTTC 5 cut(s) 459, 617, 941, 1139, 1452
EarI CTCTTC 5 cut(s) 459, 617, 941, 1139, 1452
EciI GGCGGA 1 cut(s) 929
EclXI CGGCCG 2 cut(s) 693, 899
Eco130I CCWWGG 1 cut(s) 233
Eco147I AGGCCT 1 cut(s) 991
Eco24I GRGCYC 1 cut(s) 764
Eco31I GGTCTC 1 cut(s) 958
Eco47I GGWCC 2 cut(s) 733, 738
Eco52I CGGCCG 2 cut(s) 693, 899
Eco88I CYCGRG 2 cut(s) 277, 953
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoRI GAATTC 1 cut(s) 1667
EcoT14I CCWWGG 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 1396
EcoT38I GRGCYC 1 cut(s) 764
EgeI GGCGCC 2 cut(s) 6, 930
EheI GGCGCC 2 cut(s) 6, 930
ErhI CCWWGG 1 cut(s) 233
FalI AAGNNNNNCTT 2 cut(s) 1809, 1841
FaqI GGGAC 2 cut(s) 650, 724
FauI CCCGC 2 cut(s) 531, 711
FokI GGATG 2 cut(s) 185, 1259
FriOI GRGCYC 1 cut(s) 764
FspBI CTAG 4 cut(s) 357, 765, 1374, 1754
GlaI GCGC 3 cut(s) 6, 769, 930
GsuI CTGGAG 1 cut(s) 330
HaeII RGCGCY 3 cut(s) 8, 771, 932
HaeIII GGCC 6 cut(s) 84, 291, 695, 845, 901, 991
HgaI GACGC 3 cut(s) 690, 1061, 1269
HhaI GCGC 3 cut(s) 7, 770, 931
Hin1I GRCGYC 3 cut(s) 5, 929, 1280
Hin6I GCGC 3 cut(s) 5, 768, 929
HinP1I GCGC 3 cut(s) 5, 768, 929
HincII GTYRAC 1 cut(s) 1076
HindII GTYRAC 1 cut(s) 1076
HindIII AAGCTT 3 cut(s) 269, 798, 860
HinfI GANTC 4 cut(s) 135, 481, 575, 1362
HphI GGTGA 5 cut(s) 218, 717, 764, 1058, 1844
Hpy166II GTNNAC 6 cut(s) 725, 1033, 1076, 1593, 1979, 1990
Hpy188I TCNGA 6 cut(s) 150, 480, 580, 617, 715, 2116
Hpy8I GTNNAC 6 cut(s) 725, 1033, 1076, 1593, 1979, 1990
Hpy99I CGWCG 2 cut(s) 681, 684
HpyAV CCTTC 2 cut(s) 420, 1490
HpyCH4III ACNGT 5 cut(s) 1323, 1388, 1774, 1930, 2098
HpyCH4IV ACGT 4 cut(s) 942, 1156, 1233, 2104
HpyCH4V TGCA 7 cut(s) 424, 595, 1394, 1408, 1703, 1760, 2009
HpyF10VI GCNNNNNNNGC 7 cut(s) 268, 427, 430, 806, 907, 916, 928
HpyF3I CTNAG 6 cut(s) 147, 272, 506, 986, 1984, 2113
HpySE526I ACGT 4 cut(s) 942, 1156, 1233, 2104
Hsp92I GRCGYC 3 cut(s) 5, 929, 1280
HspAI GCGC 3 cut(s) 5, 768, 929
KasI GGCGCC 2 cut(s) 4, 928
KpnI GGTACC 1 cut(s) 1971
KroI GCCGGC 2 cut(s) 910, 922
KroNI GCCGGC 2 cut(s) 912, 924
LmnI GCTCC 4 cut(s) 496, 759, 916, 1581
Lsp1109I GCAGC 5 cut(s) 408, 442, 607, 894, 2101
LweI GCATC 9 cut(s) 582, 1381, 1458, 1747, 1843, 1849, 1863, 1900, 1996
MaeI CTAG 4 cut(s) 357, 765, 1374, 1754
MaeII ACGT 4 cut(s) 942, 1156, 1233, 2104
MaeIII GTNAC 6 cut(s) 100, 1152, 1263, 1281, 1892, 1930
MbiI CCGCTC 1 cut(s) 784
MfeI CAATTG 1 cut(s) 1440
MflI RGATCY 4 cut(s) 187, 1269, 1503, 1705
MhlI GDGCHC 2 cut(s) 764, 1011
Mly113I GGCGCC 2 cut(s) 5, 929
MlyI GAGTC 1 cut(s) 129
MmeI TCCRAC 2 cut(s) 32, 738
Mph1103I ATGCAT 1 cut(s) 1396
MreI CGCCGGCG 1 cut(s) 922
MroNI GCCGGC 2 cut(s) 910, 922
MroXI GAANNNNTTC 3 cut(s) 474, 834, 1961
MseI TTAA 5 cut(s) 92, 117, 1172, 1275, 1584
MslI CAYNNNNRTG 1 cut(s) 1038
MspA1I CMGCKG 1 cut(s) 907
MspCI CTTAAG 1 cut(s) 1274
MspR9I CCNGG 1 cut(s) 855
MunI CAATTG 1 cut(s) 1440
MwoI GCNNNNNNNGC 7 cut(s) 268, 427, 430, 806, 907, 916, 928
NaeI GCCGGC 2 cut(s) 912, 924
NarI GGCGCC 2 cut(s) 5, 929
NciI CCSGG 1 cut(s) 855
NgoMIV GCCGGC 2 cut(s) 910, 922
NlaIV GGNNCC 9 cut(s) 6, 471, 740, 761, 788, 918, 930, 1271, 1969
NmuCI GTSAC 3 cut(s) 1152, 1263, 1281
NsiI ATGCAT 1 cut(s) 1396
PaeR7I CTCGAG 1 cut(s) 953
PagI TCATGA 1 cut(s) 1564
PceI AGGCCT 1 cut(s) 991
PdiI GCCGGC 2 cut(s) 912, 924
PdmI GAANNNNTTC 3 cut(s) 474, 834, 1961
PfeI GAWTC 3 cut(s) 481, 575, 1362
PflFI GACNNNGTC 1 cut(s) 1621
PflMI CCANNNNNTGG 1 cut(s) 1640
PinAI ACCGGT 3 cut(s) 472, 735, 749
PleI GAGTC 1 cut(s) 129
PluTI GGCGCC 2 cut(s) 8, 932
PpsI GAGTC 1 cut(s) 129
PspN4I GGNNCC 9 cut(s) 6, 471, 740, 761, 788, 918, 930, 1271, 1969
PspPI GGNCC 4 cut(s) 83, 290, 733, 738
PspXI VCTCGAGB 1 cut(s) 953
PsuI RGATCY 4 cut(s) 187, 1269, 1503, 1705
PsyI GACNNNGTC 1 cut(s) 1621
RsaI GTAC 1 cut(s) 1969
RsaNI GTAC 1 cut(s) 1968
RseI CAYNNNNRTG 1 cut(s) 1038
Rsr2I CGGWCCG 1 cut(s) 733
RsrII CGGWCCG 1 cut(s) 733
SaqAI TTAA 5 cut(s) 92, 117, 1172, 1275, 1584
Sau96I GGNCC 4 cut(s) 83, 290, 733, 738
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 1 cut(s) 855
SduI GDGCHC 2 cut(s) 764, 1011
SfaNI GCATC 9 cut(s) 582, 1381, 1458, 1747, 1843, 1849, 1863, 1900, 1996
SfoI GGCGCC 2 cut(s) 6, 930
Sfr274I CTCGAG 1 cut(s) 953
SgrAI CRCCGGYG 1 cut(s) 922
SinI GGWCC 2 cut(s) 733, 738
SlaI CTCGAG 1 cut(s) 953
SmiMI CAYNNNNRTG 1 cut(s) 1038
SmlI CTYRAG 4 cut(s) 137, 953, 1274, 1798
SmoI CTYRAG 4 cut(s) 137, 953, 1274, 1798
SseBI AGGCCT 1 cut(s) 991
SspDI GGCGCC 2 cut(s) 4, 928
SspMI CTAG 4 cut(s) 357, 765, 1374, 1754
StuI AGGCCT 1 cut(s) 991
StyD4I CCNGG 1 cut(s) 853
StyI CCWWGG 1 cut(s) 233
TaaI ACNGT 5 cut(s) 1323, 1388, 1774, 1930, 2098
TaiI ACGT 4 cut(s) 945, 1159, 1236, 2107
TaqI TCGA 6 cut(s) 331, 486, 746, 803, 954, 1605
TaqII GACCGA 1 cut(s) 504
TauI GCSGC 9 cut(s) 709, 773, 792, 904, 907, 922, 929, 934, 937
TfiI GAWTC 3 cut(s) 481, 575, 1362
Tru1I TTAA 5 cut(s) 92, 117, 1172, 1275, 1584
Tru9I TTAA 5 cut(s) 92, 117, 1172, 1275, 1584
TscAI CASTG 4 cut(s) 38, 1393, 2057, 2103
TseFI GTSAC 3 cut(s) 1152, 1263, 1281
TseI GCWGC 5 cut(s) 421, 430, 595, 907, 2089
Tsp45I GTSAC 3 cut(s) 1152, 1263, 1281
TspGWI ACGGA 4 cut(s) 167, 594, 710, 1282
TspRI CASTG 4 cut(s) 38, 1393, 2057, 2103
Tth111I GACNNNGTC 1 cut(s) 1621
Van91I CCANNNNNTGG 1 cut(s) 1640
Vha464I CTTAAG 1 cut(s) 1274
VpaK11BI GGWCC 2 cut(s) 733, 738
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 7 cut(s) 194, 1050, 1520, 1667, 1846, 2072, 2124
XbaI TCTAGA 1 cut(s) 1753
XhoI CTCGAG 1 cut(s) 953
XmnI GAANNNNTTC 3 cut(s) 474, 834, 1961
XspI CTAG 4 cut(s) 357, 765, 1374, 1754
Zsp2I ATGCAT 1 cut(s) 1396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.