FvH4_3g30771

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000094
Physical Location & Seq
Reverse (-)
24180147 .. 24182579
2433 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30771.t1

Sequence Viewer

Length: 2433 bp
ATGCCTTTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATATCTTGATCGTTTCGTGATCGTATTCATAGATGATATCTTAATTTACTCAAGAAGTGAGAAAGAGCATGCCAAGCATCTAAGAATAATATTGCGGACTTTGGAAAAGTCGCAGTTATTTGGTAAGTTTAGCAAGTGTGAGTTTTGGCTAGATAAAGTGGGGTTCTTGGGTCATGTGATTTCGGCAGAGGGAGTTAGTGTGGATCCCCAAAAAGTGGAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAAATTGCTGCTCCTCTCACAAAGTTGACCAAGAAGGGGGTTAAGTTTGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGTTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAACATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCAGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAAAGAGAGCTTAATATGAGACAGAGAAGATGGATGGAGTTAATCAGTGATTATGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTGTCAGTGGATGAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTACGGGAAGCACAGTATAATGATCCTTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGGGACTCTGTTGTTTAAAAATCGGCTATATGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCATAGCTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATTGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCAAGGCTGAAAGGCAGAAGCCTTCAGGATTGCTTGAGCCGTTGCCCATTCCAGTGTGGAAGTGGGACCATATCACCATGGATTTTGTTTTTAGCTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTGGATAAATTGGCGGAGCTCTATGTGAATGAAATTGTGAGGCTTCACGGTGTTCCTGAATCAATAGTGTCAGATCGGGATCCTCGTTTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGTTCAGAGGTAGTTGGGATAAAAACCTATCTTTGATGGAATTTGCCTATAATAATAGCTATCATTCTAGCATTGGTATGGCGCCCTTTGAGGCTCTTTATGGGAGGCAGTGTCGCACGCCTTTGTGTTGGAATGAAGTAGGGGAAAAAGAGCTTTGCGGCCCAGAGTTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAAGACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTGGGTGTTCCTGAAATTATCTCCTTGGAAAGGAGTTGTGCGTTTCGGTAAGCGTGGGAAGCTTAGTCCGAGGTATATTGGCCCTTATGAGATTGTAGAGCGAGTTGGCTCACTTGCTTATCGATTAGCCTTGCCTCCAGGGTTATCCCGGATACATAATGTGTTTCATGTATCCATGCTTCGCAAGTATATTGCCGATCCTTCTCATGTGCTGCAAGAGCAGCCGATCAGTTTGACGAGAGATTTGACCTATGACGAGGAACTGGTTCAGATTCTCGACCGAAAGGAGCAAGTGCTTAGGAATAAGACAATCCCGCTTGTCAAGGTGCTGTGGAGAAGTCATCAAGTAGAAGAAGCTACTTGGGAATCAGAGGAGCAAATGATGCAGCAGTATCCGTATCTCTTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

811

Amino Acids

93.58

Weight (kDa)

9.08

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 1 - 82 4e-17 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 145 - 239 1.9e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 171 - 269 5.5e-33 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 384 - 441 7e-20 Integrase zinc binding domain
SH3_Tf2-1 PF24626 673 - 737 2.5e-27 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 338
Acc65I GGTACC 1 cut(s) 1634
AccB1I GGYRCC 2 cut(s) 1634, 1816
AccB7I CCANNNNNTGG 1 cut(s) 280
AccBSI CCGCTC 1 cut(s) 1958
AccII CGCG 1 cut(s) 29
AccIII TCCGGA 1 cut(s) 505
AclWI GGATC 7 cut(s) 48, 263, 276, 1028, 1580, 1593, 2213
AcoI YGGCCR 1 cut(s) 1256
AcsI RAATTY 3 cut(s) 1604, 1775, 2006
AcuI CTGAAG 3 cut(s) 1323, 1604, 1633
AcyI GRCGYC 1 cut(s) 1817
AfaI GTAC 3 cut(s) 1014, 1420, 1636
AfiI CCNNNNNNNGG 5 cut(s) 280, 417, 623, 1428, 2051
AgsI TTSAA 9 cut(s) 381, 431, 461, 469, 613, 1162, 1240, 2006, 2012
AjiI CACGTC 1 cut(s) 551
AjnI CCWGG 2 cut(s) 829, 2158
AjuI GAANNNNNNNTTGG 2 cut(s) 1490, 1522
AleI CACNNNNGTG 1 cut(s) 314
Alw21I GWGCWC 3 cut(s) 490, 1527, 1618
Alw26I GTCTC 2 cut(s) 679, 766
AlwI GGATC 7 cut(s) 48, 263, 276, 1028, 1580, 1593, 2213
Aor13HI TCCGGA 1 cut(s) 505
AoxI GGCC 4 cut(s) 992, 1256, 1894, 2101
ApeKI GCWGC 9 cut(s) 389, 656, 1079, 1202, 1280, 1625, 2233, 2242, 2407
ApoI RAATTY 3 cut(s) 1604, 1775, 2006
ArsI GACNNNNNNTTYG 2 cut(s) 2248, 2280
Asp700I GAANNNNTTC 1 cut(s) 2286
Asp718I GGTACC 1 cut(s) 1634
AspLEI GCGC 2 cut(s) 363, 1819
AspS9I GGNCC 3 cut(s) 1381, 1895, 2102
AsuC2I CCSGG 2 cut(s) 1212, 2170
AsuHPI GGTGA 4 cut(s) 1381, 1456, 1459, 2030
AsuII TTCGAA 1 cut(s) 1067
AvaII GGWCC 1 cut(s) 1381
BalI TGGCCA 1 cut(s) 1258
BamHI GGATCC 2 cut(s) 268, 1585
BanI GGYRCC 2 cut(s) 1634, 1816
BanII GRGCYC 2 cut(s) 1527, 1618
BarI GAAGNNNNNNTAC 2 cut(s) 2184, 2216
BbsI GAAGAC 2 cut(s) 310, 728
Bbv12I GWGCWC 3 cut(s) 490, 1527, 1618
BbvI GCAGC 9 cut(s) 376, 668, 1091, 1189, 1292, 1637, 2220, 2254, 2419
BccI CCATC 8 cut(s) 777, 781, 892, 1048, 1100, 1421, 1670, 1765
BceAI ACGGC 1 cut(s) 1339
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BciT130I CCWGG 2 cut(s) 831, 2160
BciVI GTATCC 3 cut(s) 2166, 2203, 2424
BcnI CCSGG 2 cut(s) 1212, 2170
BcoDI GTCTC 2 cut(s) 679, 766
BfaI CTAG 5 cut(s) 215, 546, 557, 603, 1803
BfmI CTRYAG 1 cut(s) 933
BfoI RGCGCY 2 cut(s) 364, 1820
BfuAI ACCTGC 1 cut(s) 338
BfuI GTATCC 3 cut(s) 2166, 2203, 2424
BglII AGATCT 1 cut(s) 1999
Bme1390I CCNGG 4 cut(s) 831, 1212, 2160, 2170
Bme18I GGWCC 1 cut(s) 1381
BmgBI CACGTC 1 cut(s) 551
BmgT120I GGNCC 3 cut(s) 1381, 1895, 2102
BmiI GGNNCC 7 cut(s) 270, 703, 1075, 1382, 1587, 1636, 1818
BmrFI CCNGG 4 cut(s) 831, 1212, 2160, 2170
BmsI GCATC 5 cut(s) 151, 529, 561, 844, 2394
BpiI GAAGAC 2 cut(s) 310, 728
BplI GAGNNNNNCTC 2 cut(s) 1932, 1964
BpmI CTGGAG 2 cut(s) 668, 2142
Bpu10I CCTNAGC 1 cut(s) 2318
Bpu14I TTCGAA 1 cut(s) 1067
BpuEI CTTGAG 4 cut(s) 100, 659, 1370, 1934
BpuMI CCSGG 2 cut(s) 1212, 2170
Bsa29I ATCGAT 1 cut(s) 2143
BsaBI GATNNNNATC 1 cut(s) 1584
BsaHI GRCGYC 1 cut(s) 1817
BsaJI CCNNGG 5 cut(s) 27, 1392, 2045, 2090, 2159
BsaWI WCCGGW 1 cut(s) 505
Bsc4I CCNNNNNNNGG 5 cut(s) 280, 417, 623, 1428, 2051
Bse1I ACTGG 5 cut(s) 978, 995, 1367, 1487, 2289
Bse8I GATNNNNATC 1 cut(s) 1584
BseAI TCCGGA 1 cut(s) 505
BseBI CCWGG 2 cut(s) 831, 2160
BseCI ATCGAT 1 cut(s) 2143
BseDI CCNNGG 5 cut(s) 27, 1392, 2045, 2090, 2159
BseGI GGATG 6 cut(s) 514, 792, 826, 961, 1207, 1663
BseJI GATNNNNATC 1 cut(s) 1584
BseLI CCNNNNNNNGG 5 cut(s) 280, 417, 623, 1428, 2051
BseMII CTCAG 2 cut(s) 1682, 1973
BseNI ACTGG 5 cut(s) 978, 995, 1367, 1487, 2289
BseRI GAGGAG 2 cut(s) 384, 2408
BseXI GCAGC 9 cut(s) 376, 668, 1091, 1189, 1292, 1637, 2220, 2254, 2419
BsgI GTGCAG 1 cut(s) 1458
Bsh1236I CGCG 1 cut(s) 29
Bsh1285I CGRYCG 1 cut(s) 2302
BshFI GGCC 4 cut(s) 994, 1258, 1896, 2103
BshNI GGYRCC 2 cut(s) 1634, 1816
BshVI ATCGAT 1 cut(s) 2143
BsiEI CGRYCG 1 cut(s) 2302
BsiHKAI GWGCWC 3 cut(s) 490, 1527, 1618
BsiSI CCGG 3 cut(s) 506, 1211, 2170
BslFI GGGAC 2 cut(s) 1123, 1394
BslI CCNNNNNNNGG 5 cut(s) 280, 417, 623, 1428, 2051
BsmAI GTCTC 2 cut(s) 679, 766
BsmFI GGGAC 2 cut(s) 1123, 1394
BsnI GGCC 4 cut(s) 994, 1258, 1896, 2103
Bsp119I TTCGAA 1 cut(s) 1067
Bsp1286I GDGCHC 3 cut(s) 490, 1527, 1618
Bsp13I TCCGGA 1 cut(s) 505
Bsp19I CCATGG 1 cut(s) 1392
BspANI GGCC 4 cut(s) 994, 1258, 1896, 2103
BspCNI CTCAG 2 cut(s) 1681, 1972
BspDI ATCGAT 1 cut(s) 2143
BspEI TCCGGA 1 cut(s) 505
BspFNI CGCG 1 cut(s) 29
BspHI TCATGA 2 cut(s) 45, 640
BspLI GGNNCC 7 cut(s) 270, 703, 1075, 1382, 1587, 1636, 1818
BspMI ACCTGC 1 cut(s) 338
BspPI GGATC 7 cut(s) 48, 263, 276, 1028, 1580, 1593, 2213
BspQI GCTCTTC 1 cut(s) 1623
BspT104I TTCGAA 1 cut(s) 1067
BspT107I GGYRCC 2 cut(s) 1634, 1816
BsrBI CCGCTC 1 cut(s) 1958
BsrI ACTGG 5 cut(s) 978, 995, 1367, 1487, 2289
BssECI CCNNGG 5 cut(s) 27, 1392, 2045, 2090, 2159
BssNI GRCGYC 1 cut(s) 1817
BssT1I CCWWGG 2 cut(s) 1392, 2045
Bst2UI CCWGG 2 cut(s) 831, 2160
Bst4CI ACNGT 4 cut(s) 316, 1026, 1439, 1556
Bst6I CTCTTC 8 cut(s) 1096, 1149, 1157, 1262, 1623, 1652, 1967, 2429
BstACI GRCGYC 1 cut(s) 1817
BstAPI GCANNNNNTGC 2 cut(s) 1202, 2404
BstBI TTCGAA 1 cut(s) 1067
BstC8I GCNNGC 5 cut(s) 135, 449, 654, 930, 1853
BstDEI CTNAG 6 cut(s) 146, 860, 1668, 1959, 2084, 2318
BstDSI CCRYGG 2 cut(s) 27, 1392
BstENI CCTNNNNNAGG 1 cut(s) 2049
BstF5I GGATG 6 cut(s) 514, 792, 826, 961, 1207, 1663
BstFNI CGCG 1 cut(s) 29
BstH2I RGCGCY 2 cut(s) 364, 1820
BstHHI GCGC 2 cut(s) 363, 1819
BstMAI GTCTC 2 cut(s) 679, 766
BstMCI CGRYCG 1 cut(s) 2302
BstNI CCWGG 2 cut(s) 831, 2160
BstNSI RCATGY 1 cut(s) 137
BstSCI CCNGG 4 cut(s) 829, 1210, 2158, 2168
BstSFI CTRYAG 1 cut(s) 933
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 9 cut(s) 376, 668, 1091, 1189, 1292, 1637, 2220, 2254, 2419
BstV2I GAAGAC 2 cut(s) 310, 728
BstX2I RGATCY 4 cut(s) 40, 268, 1585, 1999
BstYI RGATCY 4 cut(s) 40, 268, 1585, 1999
Bsu15I ATCGAT 1 cut(s) 2143
BsuI GTATCC 3 cut(s) 2166, 2203, 2424
BsuRI GGCC 4 cut(s) 994, 1258, 1896, 2103
BsuTUI ATCGAT 1 cut(s) 2143
BtgI CCRYGG 2 cut(s) 27, 1392
BtrI CACGTC 1 cut(s) 551
BtsCI GGATG 6 cut(s) 514, 792, 826, 961, 1207, 1663
BtsI GCAGTG 3 cut(s) 294, 1653, 1850
BtsIMutI CAGTG 9 cut(s) 294, 312, 449, 805, 957, 1374, 1494, 1653, 1850
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 5 cut(s) 135, 449, 654, 930, 1853
CciI TCATGA 2 cut(s) 45, 640
CfoI GCGC 2 cut(s) 363, 1819
Cfr13I GGNCC 3 cut(s) 1381, 1895, 2102
Cfr42I CCGCGG 1 cut(s) 30
ClaI ATCGAT 1 cut(s) 2143
Csp6I GTAC 3 cut(s) 1013, 1419, 1635
CviQI GTAC 3 cut(s) 1013, 1419, 1635
DdeI CTNAG 6 cut(s) 146, 860, 1668, 1959, 2084, 2318
DinI GGCGCC 1 cut(s) 1818
DraI TTTAAA 1 cut(s) 1123
EaeI YGGCCR 1 cut(s) 1256
Eam1104I CTCTTC 8 cut(s) 1096, 1149, 1157, 1262, 1623, 1652, 1967, 2429
EarI CTCTTC 8 cut(s) 1096, 1149, 1157, 1262, 1623, 1652, 1967, 2429
EciI GGCGGA 1 cut(s) 1535
Ecl136II GAGCTC 2 cut(s) 1525, 1616
Eco130I CCWWGG 2 cut(s) 1392, 2045
Eco24I GRGCYC 2 cut(s) 1527, 1618
Eco32I GATATC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 1381
Eco53kI GAGCTC 2 cut(s) 1525, 1616
Eco57I CTGAAG 3 cut(s) 1323, 1604, 1633
EcoICRI GAGCTC 2 cut(s) 1525, 1616
EcoNI CCTNNNNNAGG 1 cut(s) 2049
EcoRII CCWGG 2 cut(s) 829, 2158
EcoRV GATATC 1 cut(s) 103
EcoT14I CCWWGG 2 cut(s) 1392, 2045
EcoT38I GRGCYC 2 cut(s) 1527, 1618
EgeI GGCGCC 1 cut(s) 1818
EheI GGCGCC 1 cut(s) 1818
ErhI CCWWGG 2 cut(s) 1392, 2045
FaqI GGGAC 2 cut(s) 1123, 1394
FauI CCCGC 2 cut(s) 34, 2343
FauNDI CATATG 1 cut(s) 1198
FokI GGATG 6 cut(s) 521, 799, 813, 968, 1194, 1650
FriOI GRGCYC 2 cut(s) 1527, 1618
FspBI CTAG 5 cut(s) 215, 546, 557, 603, 1803
GlaI GCGC 2 cut(s) 362, 1818
GsuI CTGGAG 2 cut(s) 668, 2142
HaeII RGCGCY 2 cut(s) 364, 1820
HaeIII GGCC 4 cut(s) 994, 1258, 1896, 2103
HapII CCGG 3 cut(s) 506, 1211, 2170
HhaI GCGC 2 cut(s) 363, 1819
Hin1I GRCGYC 1 cut(s) 1817
Hin6I GCGC 2 cut(s) 361, 1817
HinP1I GCGC 2 cut(s) 361, 1817
HincII GTYRAC 1 cut(s) 408
HindII GTYRAC 1 cut(s) 408
HindIII AAGCTT 1 cut(s) 2081
HinfI GANTC 8 cut(s) 325, 733, 1111, 1461, 1565, 1947, 2293, 2387
HpaII CCGG 3 cut(s) 506, 1211, 2170
HphI GGTGA 4 cut(s) 1381, 1456, 1459, 2030
Hpy166II GTNNAC 2 cut(s) 408, 750
Hpy8I GTNNAC 2 cut(s) 408, 750
HpyAV CCTTC 5 cut(s) 409, 1047, 1234, 1347, 2232
HpyCH4III ACNGT 4 cut(s) 316, 1026, 1439, 1556
HpyCH4IV ACGT 1 cut(s) 550
HpyF3I CTNAG 6 cut(s) 146, 860, 1668, 1959, 2084, 2318
HpySE526I ACGT 1 cut(s) 550
Hsp92I GRCGYC 1 cut(s) 1817
HspAI GCGC 2 cut(s) 361, 1817
KasI GGCGCC 1 cut(s) 1816
Kpn2I TCCGGA 1 cut(s) 505
KpnI GGTACC 1 cut(s) 1638
KspI CCGCGG 1 cut(s) 30
LguI GCTCTTC 1 cut(s) 1623
LmnI GCTCC 9 cut(s) 397, 493, 649, 701, 1073, 1522, 1613, 2308, 2395
Lsp1109I GCAGC 9 cut(s) 376, 668, 1091, 1189, 1292, 1637, 2220, 2254, 2419
LweI GCATC 5 cut(s) 151, 529, 561, 844, 2394
MaeI CTAG 5 cut(s) 215, 546, 557, 603, 1803
MaeII ACGT 1 cut(s) 550
MaeIII GTNAC 2 cut(s) 316, 1912
MbiI CCGCTC 1 cut(s) 1958
MfeI CAATTG 1 cut(s) 608
MflI RGATCY 4 cut(s) 40, 268, 1585, 1999
MhlI GDGCHC 3 cut(s) 490, 1527, 1618
MlsI TGGCCA 1 cut(s) 1258
MluNI TGGCCA 1 cut(s) 1258
Mly113I GGCGCC 1 cut(s) 1817
MlyI GAGTC 4 cut(s) 742, 1105, 1455, 1941
MmeI TCCRAC 1 cut(s) 1844
Mox20I TGGCCA 1 cut(s) 1258
MroI TCCGGA 1 cut(s) 505
MroXI GAANNNNTTC 1 cut(s) 2286
MscI TGGCCA 1 cut(s) 1258
MseI TTAA 7 cut(s) 107, 423, 765, 794, 1122, 1904, 1929
MslI CAYNNNNRTG 4 cut(s) 314, 1223, 1367, 1811
Msp20I TGGCCA 1 cut(s) 1258
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 3 cut(s) 506, 1211, 2170
MspR9I CCNGG 4 cut(s) 831, 1212, 2160, 2170
MunI CAATTG 1 cut(s) 608
MvaI CCWGG 2 cut(s) 831, 2160
MvnI CGCG 1 cut(s) 29
NarI GGCGCC 1 cut(s) 1817
NciI CCSGG 2 cut(s) 1212, 2170
NcoI CCATGG 1 cut(s) 1392
NdeI CATATG 1 cut(s) 1198
NlaIV GGNNCC 7 cut(s) 270, 703, 1075, 1382, 1587, 1636, 1818
NmuCI GTSAC 1 cut(s) 316
NspI RCATGY 1 cut(s) 137
NspV TTCGAA 1 cut(s) 1067
OliI CACNNNNGTG 1 cut(s) 314
PaeI GCATGC 1 cut(s) 137
PagI TCATGA 2 cut(s) 45, 640
PciSI GCTCTTC 1 cut(s) 1623
PcsI WCGNNNNNNNCGW 1 cut(s) 1588
PdmI GAANNNNTTC 1 cut(s) 2286
PfeI GAWTC 4 cut(s) 325, 1565, 2293, 2387
PflFI GACNNNGTC 1 cut(s) 552
PflMI CCANNNNNTGG 1 cut(s) 280
PfoI TCCNGGA 2 cut(s) 829, 2168
PleI GAGTC 4 cut(s) 741, 1105, 1455, 1941
PluTI GGCGCC 1 cut(s) 1820
PpsI GAGTC 4 cut(s) 741, 1105, 1455, 1941
Psp124BI GAGCTC 2 cut(s) 1527, 1618
Psp6I CCWGG 2 cut(s) 829, 2158
PspGI CCWGG 2 cut(s) 829, 2158
PspN4I GGNNCC 7 cut(s) 270, 703, 1075, 1382, 1587, 1636, 1818
PspPI GGNCC 3 cut(s) 1381, 1895, 2102
PsuI RGATCY 4 cut(s) 40, 268, 1585, 1999
PsyI GACNNNGTC 1 cut(s) 552
RsaI GTAC 3 cut(s) 1014, 1420, 1636
RsaNI GTAC 3 cut(s) 1013, 1419, 1635
RseI CAYNNNNRTG 4 cut(s) 314, 1223, 1367, 1811
SacI GAGCTC 2 cut(s) 1527, 1618
SacII CCGCGG 1 cut(s) 30
SapI GCTCTTC 1 cut(s) 1623
SaqAI TTAA 7 cut(s) 107, 423, 765, 794, 1122, 1904, 1929
Sau96I GGNCC 3 cut(s) 1381, 1895, 2102
SchI GAGTC 4 cut(s) 742, 1105, 1455, 1941
ScrFI CCNGG 4 cut(s) 831, 1212, 2160, 2170
SduI GDGCHC 3 cut(s) 490, 1527, 1618
SfaNI GCATC 5 cut(s) 151, 529, 561, 844, 2394
SfcI CTRYAG 1 cut(s) 933
SfoI GGCGCC 1 cut(s) 1818
Sfr303I CCGCGG 1 cut(s) 30
SfuI TTCGAA 1 cut(s) 1067
SgrBI CCGCGG 1 cut(s) 30
SinI GGWCC 1 cut(s) 1381
SmiMI CAYNNNNRTG 4 cut(s) 314, 1223, 1367, 1811
SmlI CTYRAG 4 cut(s) 115, 674, 1349, 1949
SmoI CTYRAG 4 cut(s) 115, 674, 1349, 1949
SphI GCATGC 1 cut(s) 137
SspDI GGCGCC 1 cut(s) 1816
SspI AATATT 1 cut(s) 156
SspMI CTAG 5 cut(s) 215, 546, 557, 603, 1803
SstI GAGCTC 2 cut(s) 1527, 1618
StyD4I CCNGG 4 cut(s) 829, 1210, 2158, 2168
StyI CCWWGG 2 cut(s) 1392, 2045
TaaI ACNGT 4 cut(s) 316, 1026, 1439, 1556
TaiI ACGT 1 cut(s) 553
TaqI TCGA 7 cut(s) 293, 583, 865, 1048, 1067, 2143, 2298
TaqII GACCGA 1 cut(s) 2316
TauI GCSGC 4 cut(s) 32, 619, 1079, 1896
TfiI GAWTC 4 cut(s) 325, 1565, 2293, 2387
Tru1I TTAA 7 cut(s) 107, 423, 765, 794, 1122, 1904, 1929
Tru9I TTAA 7 cut(s) 107, 423, 765, 794, 1122, 1904, 1929
TscAI CASTG 9 cut(s) 294, 319, 449, 805, 957, 1374, 1494, 1660, 1850
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 9 cut(s) 389, 656, 1079, 1202, 1280, 1625, 2233, 2242, 2407
Tsp45I GTSAC 1 cut(s) 316
TspGWI ACGGA 3 cut(s) 335, 1979, 2406
TspRI CASTG 9 cut(s) 294, 319, 449, 805, 957, 1374, 1494, 1660, 1850
Tth111I GACNNNGTC 1 cut(s) 552
Van91I CCANNNNNTGG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 1381
XagI CCTNNNNNAGG 1 cut(s) 2049
XapI RAATTY 3 cut(s) 1604, 1775, 2006
XbaI TCTAGA 1 cut(s) 545
XceI RCATGY 1 cut(s) 137
XcmI CCANNNNNNNNNTGG 1 cut(s) 1374
XmnI GAANNNNTTC 1 cut(s) 2286
XspI CTAG 5 cut(s) 215, 546, 557, 603, 1803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.