FvH4_4g16179
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Forward (+)
20158798 .. 20160471
1674 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16179.t1

Sequence Viewer

Length: 1674 bp
ATGCGGCAAAGAAGATGGATGGAGCTTATCAAAGACTATGACTTCACTTTGCAATACCACCCCGGGAAAGCAAATGTAGTCGCTGACGCTTTAAGCAGAAAGCCTCGAAGTCACCTCGCCTCAATTATGAGAGAACATTGGAGCATGTTAGATACTCTAATTGATTTCAATCTCACTCCTTCCATGAACATGGATGGAATTTTTATAGGGAACCTAGTCGTACAACCGACAATAATTGGTCAAATCATTCAAGCGCAAGGTGAAGATGAAGAGCTTGTGAAATATATTCAAGGAATGAAAGAGAAGCACCCTGAAGACTGGAGCATACAAGCAGGAGAAGGAATGCGTTTTAGAGGGAGGCTTTGCGTGCCAAATGTTGCATCATTAAAAGAGGATATAATGCAGGAGGCACATCGTTCAAAATTCACAGTCCATCCGGGAGGAATGAAGATGTATAAAGACTTGAGGAAAAACTATTGGTGGAACAACATGAAGAGAGACATTGCCAGCTATGTCTCTAAGTGTCTTACATGCCAACTTGTGAAAGCGGAGCACGTGCGAAAAGGAGGATTATTACAACCTCTCAAGATTCCAAAATGGAAGTGGGAGCACATCACGATGGACTTTGTTACCGGGTTACCAAAGACGCAAAGAGGTAACGATGCCATTTGGGTCATTGTCGATCGCCTTACAAAGTCTGCCCATTTCCTGCCAATAAAAATAACAGACTCCATTGACGTCTTAAGTAAACTATACTTAAGAGAAGTTGTTCGACTTCATGGAGTTCCTGTTTCAATAGTATCTGATCGTGACGCTCGATTCACATCAAGATTTTGGGTCAGCCTACAAACTGCGATGGAGACGAAGTTGGACATGAGCACTGCATTCCACCCTCAGACTGATGGTCAAACAGAGAGAGTCAATCAAGTGATGGAAGATATGCTGAGATCATGCATTTTGGATTTTGGAGGGAATTGGGAGGATCACTTATACTTGATCGAGTTTGCTTACAACAACGGTTACCACTCAAGCACAGGGATGGCACCTTTCGAAGCTCTTTACGGGAGACCTTGTCGTACCCCAATATGTTGGGCTGAAGTAGGCGAAGCCGTTCTTCCCGGACCTGATATAGTTAAGCAATCTGCAGAGGTCGTTACTTCAATTAAGGATCGTTTGAAGACTACACAAAGTCGACAGAAGAGCTATGCAGATCGACATAGGAGAAATGTGGAATTTCAAATCGGTGATCTTGTTTTGCTAAAAGTCTCACCAATGCGAGGAGTTATTCGTTTCGGTAAAAAGATTGCCAAGTTGTCACCACGGTTCATTGGACCTTTCCAAATCATTGAAAAAGTTGGTACTTTAGCATACCGACTAGATCTACCACAACACTTGTCCAACGTGCATAACGTTTTTCACGTGTCTATGTTACGGGATTACAAACCAGACAGTTCCCATGTCATCGACCATAGTACCATAGAACTCTCGGAAGATGTGACGTACGATGAGGCACCTGTTCGCATCTTAGGTCGAGAAGTTAGGAAGCTTCGCACTAAAGAAATCCCAATGGTGAAGATATTATGGAACCGACATGATGAAAACGAGGCTTCATGGGAGTTGGAATCAGAAATGAGAAAGAAACATCCGCATTTGTTCATAGAACAAGGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

558

Amino Acids

64.5

Weight (kDa)

9.01

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Integrase_H2C2 PF17921 128 - 183 1.2e-18 Integrase zinc binding domain
SH3_Tf2-1 PF24626 415 - 480 4.1e-26 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 741
AccB1I GGYRCC 2 cut(s) 1042, 1510
AccI GTMKAC 1 cut(s) 1192
AciI CCGC 3 cut(s) 4, 548, 1646
AclI AACGTT 1 cut(s) 1410
AclWI GGATC 2 cut(s) 990, 1176
AcsI RAATTY 3 cut(s) 198, 422, 1232
AcuI CTGAAG 2 cut(s) 333, 1116
AcvI CACGTG 2 cut(s) 556, 1420
AcyI GRCGYC 1 cut(s) 738
AfaI GTAC 5 cut(s) 222, 1078, 1360, 1474, 1502
AfiI CCNNNNNNNGG 1 cut(s) 1277
AflII CTTAAG 2 cut(s) 742, 757
AflIII ACRYGT 1 cut(s) 1419
AgsI TTSAA 9 cut(s) 169, 251, 290, 420, 795, 1161, 1177, 1238, 1349
AhdI GACNNNNNGTC 1 cut(s) 903
AluBI AGCT 6 cut(s) 25, 274, 510, 1055, 1203, 1546
AluI AGCT 6 cut(s) 25, 274, 510, 1055, 1203, 1546
Alw21I GWGCWC 3 cut(s) 555, 612, 881
Alw26I GTCTC 5 cut(s) 492, 520, 854, 1060, 1270
AlwI GGATC 2 cut(s) 990, 1176
Ama87I CYCGRG 1 cut(s) 62
ApoI RAATTY 3 cut(s) 198, 422, 1232
Asp700I GAANNNNTTC 2 cut(s) 768, 1110
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 2 cut(s) 1121, 1331
AsuC2I CCSGG 5 cut(s) 63, 64, 438, 634, 1119
AsuHPI GGTGA 6 cut(s) 104, 272, 1256, 1260, 1308, 1582
AsuII TTCGAA 1 cut(s) 1050
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 2 cut(s) 1121, 1331
BaeI ACNNNNGTAYC 2 cut(s) 1456, 1489
BanI GGYRCC 2 cut(s) 1042, 1510
BbrPI CACGTG 2 cut(s) 556, 1420
BbsI GAAGAC 2 cut(s) 321, 1184
Bbv12I GWGCWC 3 cut(s) 555, 612, 881
BccI CCATC 9 cut(s) 9, 13, 188, 441, 613, 850, 896, 925, 1033
BceAI ACGGC 1 cut(s) 1094
BcnI CCSGG 5 cut(s) 63, 64, 438, 634, 1119
BcoDI GTCTC 5 cut(s) 492, 520, 854, 1060, 1270
BfaI CTAG 2 cut(s) 215, 1376
BfmI CTRYAG 1 cut(s) 1143
BfrI CTTAAG 2 cut(s) 742, 757
BglII AGATCT 1 cut(s) 1378
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 5 cut(s) 63, 64, 438, 634, 1119
Bme18I GGWCC 2 cut(s) 1121, 1331
BmeRI GACNNNNNGTC 1 cut(s) 903
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 2 cut(s) 1121, 1331
BmiI GGNNCC 4 cut(s) 212, 1044, 1512, 1586
BmrFI CCNGG 5 cut(s) 63, 64, 438, 634, 1119
BmsI GCATC 3 cut(s) 389, 652, 1530
BpiI GAAGAC 2 cut(s) 321, 1184
BpmI CTGGAG 1 cut(s) 340
Bpu14I TTCGAA 1 cut(s) 1050
BpuEI CTTGAG 3 cut(s) 484, 569, 1012
BpuMI CCSGG 5 cut(s) 63, 64, 438, 634, 1119
BsaAI YACGTR 2 cut(s) 556, 1420
BsaBI GATNNNNATC 2 cut(s) 168, 823
BsaHI GRCGYC 1 cut(s) 738
BsaI GGTCTC 1 cut(s) 1060
BsaJI CCNNGG 3 cut(s) 61, 62, 1319
BsaXI ACNNNNNCTCC 6 cut(s) 774, 804, 851, 881, 1057, 1087
Bsc4I CCNNNNNNNGG 1 cut(s) 1277
Bse1I ACTGG 1 cut(s) 323
Bse3DI GCAATG 1 cut(s) 501
Bse8I GATNNNNATC 2 cut(s) 168, 823
BseDI CCNNGG 3 cut(s) 61, 62, 1319
BseGI GGATG 5 cut(s) 24, 199, 433, 1044, 1642
BseJI GATNNNNATC 2 cut(s) 168, 823
BseLI CCNNNNNNNGG 1 cut(s) 1277
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 2 cut(s) 908, 935
BseNI ACTGG 1 cut(s) 323
BseRI GAGGAG 1 cut(s) 1293
Bsh1285I CGRYCG 1 cut(s) 685
BshNI GGYRCC 2 cut(s) 1042, 1510
BsiEI CGRYCG 1 cut(s) 685
BsiHKAI GWGCWC 3 cut(s) 555, 612, 881
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 4 cut(s) 63, 437, 633, 1119
BsiWI CGTACG 1 cut(s) 1500
BslI CCNNNNNNNGG 1 cut(s) 1277
BsmAI GTCTC 5 cut(s) 492, 520, 854, 1060, 1270
BsmBI CGTCTC 1 cut(s) 854
BsmI GAATGC 2 cut(s) 348, 884
Bso31I GGTCTC 1 cut(s) 1060
BsoBI CYCGRG 1 cut(s) 62
Bsp119I TTCGAA 1 cut(s) 1050
Bsp1286I GDGCHC 3 cut(s) 555, 612, 881
Bsp143I GATC 9 cut(s) 682, 805, 947, 982, 996, 1168, 1210, 1246, 1378
BspACI CCGC 3 cut(s) 4, 548, 1646
BspCNI CTCAG 2 cut(s) 907, 936
BspLI GGNNCC 4 cut(s) 212, 1044, 1512, 1586
BspMAI CTGCAG 1 cut(s) 1147
BspPI GGATC 2 cut(s) 990, 1176
BspQI GCTCTTC 2 cut(s) 264, 1193
BspT104I TTCGAA 1 cut(s) 1050
BspT107I GGYRCC 2 cut(s) 1042, 1510
BspTI CTTAAG 2 cut(s) 742, 757
BspTNI GGTCTC 1 cut(s) 1060
BsrDI GCAATG 1 cut(s) 501
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 3 cut(s) 61, 62, 1319
BssMI GATC 9 cut(s) 682, 805, 947, 982, 996, 1168, 1210, 1246, 1378
BssNI GRCGYC 1 cut(s) 738
Bst4CI ACNGT 4 cut(s) 430, 1019, 1323, 1451
Bst6I CTCTTC 3 cut(s) 264, 488, 1193
BstACI GRCGYC 1 cut(s) 738
BstAFI CTTAAG 2 cut(s) 742, 757
BstBAI YACGTR 2 cut(s) 556, 1420
BstBI TTCGAA 1 cut(s) 1050
BstC8I GCNNGC 2 cut(s) 368, 508
BstDEI CTNAG 4 cut(s) 519, 894, 944, 1525
BstDSI CCRYGG 1 cut(s) 1319
BstEII GGTNACC 2 cut(s) 636, 1019
BstF5I GGATG 5 cut(s) 24, 199, 433, 1044, 1642
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 9 cut(s) 685, 808, 950, 985, 999, 1171, 1213, 1249, 1381
BstMAI GTCTC 5 cut(s) 492, 520, 854, 1060, 1270
BstMBI GATC 9 cut(s) 682, 805, 947, 982, 996, 1168, 1210, 1246, 1378
BstMCI CGRYCG 1 cut(s) 685
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstNSI RCATGY 2 cut(s) 148, 534
BstPI GGTNACC 2 cut(s) 636, 1019
BstSCI CCNGG 5 cut(s) 61, 62, 436, 632, 1117
BstSFI CTRYAG 1 cut(s) 1143
BstV2I GAAGAC 2 cut(s) 321, 1184
BstX2I RGATCY 1 cut(s) 1378
BstXI CCANNNNNNTGG 2 cut(s) 190, 1089
BstYI RGATCY 1 cut(s) 1378
BtgI CCRYGG 1 cut(s) 1319
BtgZI GCGATG 1 cut(s) 869
BtsCI GGATG 5 cut(s) 24, 199, 433, 1044, 1642
BtsI GCAGTG 1 cut(s) 879
BtsIMutI CAGTG 1 cut(s) 879
Cac8I GCNNGC 2 cut(s) 368, 508
CfoI GCGC 1 cut(s) 256
Cfr13I GGNCC 2 cut(s) 1121, 1331
Cfr9I CCCGGG 1 cut(s) 62
CseI GACGC 3 cut(s) 95, 655, 821
Csp6I GTAC 5 cut(s) 221, 1077, 1359, 1473, 1501
CspCI CAANNNNNGTGG 2 cut(s) 1374, 1409
CviQI GTAC 5 cut(s) 221, 1077, 1359, 1473, 1501
DdeI CTNAG 4 cut(s) 519, 894, 944, 1525
DpnI GATC 9 cut(s) 684, 807, 949, 984, 998, 1170, 1212, 1248, 1380
DpnII GATC 9 cut(s) 682, 805, 947, 982, 996, 1168, 1210, 1246, 1378
DriI GACNNNNNGTC 1 cut(s) 903
Eam1104I CTCTTC 3 cut(s) 264, 488, 1193
Eam1105I GACNNNNNGTC 1 cut(s) 903
EarI CTCTTC 3 cut(s) 264, 488, 1193
Eco31I GGTCTC 1 cut(s) 1060
Eco47I GGWCC 2 cut(s) 1121, 1331
Eco57I CTGAAG 2 cut(s) 333, 1116
Eco72I CACGTG 2 cut(s) 556, 1420
Eco88I CYCGRG 1 cut(s) 62
Eco91I GGTNACC 2 cut(s) 636, 1019
EcoO65I GGTNACC 2 cut(s) 636, 1019
EcoT22I ATGCAT 1 cut(s) 956
Esp3I CGTCTC 1 cut(s) 854
FalI AAGNNNNNCTT 2 cut(s) 1098, 1130
FblI GTMKAC 1 cut(s) 1192
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 5 cut(s) 31, 206, 420, 1051, 1629
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 2 cut(s) 215, 1376
GlaI GCGC 1 cut(s) 255
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 1 cut(s) 340
HapII CCGG 4 cut(s) 63, 437, 633, 1119
HgaI GACGC 3 cut(s) 95, 655, 821
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 738
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HincII GTYRAC 1 cut(s) 1193
HindII GTYRAC 1 cut(s) 1193
HindIII AAGCTT 1 cut(s) 1544
HinfI GANTC 5 cut(s) 589, 728, 819, 918, 1622
HpaII CCGG 4 cut(s) 63, 437, 633, 1119
HphI GGTGA 6 cut(s) 104, 272, 1256, 1260, 1308, 1582
Hpy166II GTNNAC 2 cut(s) 749, 1193
Hpy188I TCNGA 4 cut(s) 805, 897, 1489, 1627
Hpy188III TCNNGA 5 cut(s) 586, 616, 809, 828, 1532
Hpy8I GTNNAC 2 cut(s) 749, 1193
HpyAV CCTTC 2 cut(s) 189, 332
HpyCH4III ACNGT 4 cut(s) 430, 1019, 1323, 1451
HpyCH4IV ACGT 6 cut(s) 555, 738, 1401, 1410, 1419, 1499
HpyCH4V TGCA 8 cut(s) 52, 380, 403, 884, 954, 1145, 1208, 1405
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpyF3I CTNAG 4 cut(s) 519, 894, 944, 1525
HpySE526I ACGT 6 cut(s) 555, 738, 1401, 1410, 1419, 1499
Hsp92I GRCGYC 1 cut(s) 738
HspAI GCGC 1 cut(s) 254
Kzo9I GATC 9 cut(s) 682, 805, 947, 982, 996, 1168, 1210, 1246, 1378
LguI GCTCTTC 2 cut(s) 264, 1193
LmnI GCTCC 5 cut(s) 22, 141, 321, 550, 607
LweI GCATC 3 cut(s) 389, 652, 1530
MaeI CTAG 2 cut(s) 215, 1376
MaeII ACGT 6 cut(s) 555, 738, 1401, 1410, 1419, 1499
MalI GATC 9 cut(s) 684, 807, 949, 984, 998, 1170, 1212, 1248, 1380
MboI GATC 9 cut(s) 682, 805, 947, 982, 996, 1168, 1210, 1246, 1378
MflI RGATCY 1 cut(s) 1378
MhlI GDGCHC 3 cut(s) 555, 612, 881
MluCI AATT 8 cut(s) 123, 159, 198, 234, 422, 973, 1161, 1232
MlyI GAGTC 2 cut(s) 722, 927
MmeI TCCRAC 3 cut(s) 849, 1422, 1599
Mph1103I ATGCAT 1 cut(s) 956
MroXI GAANNNNTTC 2 cut(s) 768, 1110
MseI TTAA 6 cut(s) 92, 386, 743, 758, 1134, 1164
MslI CAYNNNNRTG 3 cut(s) 188, 617, 1037
MspCI CTTAAG 2 cut(s) 742, 757
MspI CCGG 4 cut(s) 63, 437, 633, 1119
MspR9I CCNGG 5 cut(s) 63, 64, 438, 634, 1119
Mva1269I GAATGC 2 cut(s) 348, 884
MwoI GCNNNNNNNGC 1 cut(s) 367
NciI CCSGG 5 cut(s) 63, 64, 438, 634, 1119
NdeII GATC 9 cut(s) 682, 805, 947, 982, 996, 1168, 1210, 1246, 1378
NlaIV GGNNCC 4 cut(s) 212, 1044, 1512, 1586
NmuCI GTSAC 4 cut(s) 110, 809, 1314, 1495
NsiI ATGCAT 1 cut(s) 956
NspI RCATGY 2 cut(s) 148, 534
NspV TTCGAA 1 cut(s) 1050
PciSI GCTCTTC 2 cut(s) 264, 1193
PcsI WCGNNNNNNNCGW 3 cut(s) 814, 1407, 1416
PctI GAATGC 2 cut(s) 348, 884
PdmI GAANNNNTTC 2 cut(s) 768, 1110
PfeI GAWTC 3 cut(s) 589, 819, 1622
Pfl23II CGTACG 1 cut(s) 1500
PflFI GACNNNGTC 1 cut(s) 1071
PfoI TCCNGGA 2 cut(s) 436, 1117
PkrI GCNGC 1 cut(s) 6
Ple19I CGATCG 1 cut(s) 685
PleI GAGTC 2 cut(s) 722, 926
PmaCI CACGTG 2 cut(s) 556, 1420
PmlI CACGTG 2 cut(s) 556, 1420
PpsI GAGTC 2 cut(s) 722, 926
Ppu21I YACGTR 2 cut(s) 556, 1420
Psp1406I AACGTT 1 cut(s) 1410
PspCI CACGTG 2 cut(s) 556, 1420
PspEI GGTNACC 2 cut(s) 636, 1019
PspLI CGTACG 1 cut(s) 1500
PspN4I GGNNCC 4 cut(s) 212, 1044, 1512, 1586
PspPI GGNCC 2 cut(s) 1121, 1331
PstI CTGCAG 1 cut(s) 1147
PsuI RGATCY 1 cut(s) 1378
PsyI GACNNNGTC 1 cut(s) 1071
PvuI CGATCG 1 cut(s) 685
RsaI GTAC 5 cut(s) 222, 1078, 1360, 1474, 1502
RsaNI GTAC 5 cut(s) 221, 1077, 1359, 1473, 1501
RseI CAYNNNNRTG 3 cut(s) 188, 617, 1037
SalI GTCGAC 1 cut(s) 1191
SapI GCTCTTC 2 cut(s) 264, 1193
SaqAI TTAA 6 cut(s) 92, 386, 743, 758, 1134, 1164
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 9 cut(s) 682, 805, 947, 982, 996, 1168, 1210, 1246, 1378
Sau96I GGNCC 2 cut(s) 1121, 1331
SchI GAGTC 2 cut(s) 722, 927
ScrFI CCNGG 5 cut(s) 63, 64, 438, 634, 1119
SduI GDGCHC 3 cut(s) 555, 612, 881
SfaNI GCATC 3 cut(s) 389, 652, 1530
SfcI CTRYAG 1 cut(s) 1143
SfuI TTCGAA 1 cut(s) 1050
SinI GGWCC 2 cut(s) 1121, 1331
SmaI CCCGGG 1 cut(s) 64
SmiMI CAYNNNNRTG 3 cut(s) 188, 617, 1037
SmlI CTYRAG 5 cut(s) 463, 584, 742, 757, 1027
SmoI CTYRAG 5 cut(s) 463, 584, 742, 757, 1027
Sse9I AATT 8 cut(s) 123, 159, 198, 234, 422, 973, 1161, 1232
SsiI CCGC 3 cut(s) 4, 548, 1646
SspMI CTAG 2 cut(s) 215, 1376
StyD4I CCNGG 5 cut(s) 61, 62, 436, 632, 1117
TaaI ACNGT 4 cut(s) 430, 1019, 1323, 1451
TaiI ACGT 6 cut(s) 558, 741, 1404, 1413, 1422, 1502
TasI AATT 8 cut(s) 123, 159, 198, 234, 422, 973, 1161, 1232
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 3 cut(s) 589, 819, 1622
Tru1I TTAA 6 cut(s) 92, 386, 743, 758, 1134, 1164
Tru9I TTAA 6 cut(s) 92, 386, 743, 758, 1134, 1164
TscAI CASTG 1 cut(s) 886
TseFI GTSAC 4 cut(s) 110, 809, 1314, 1495
Tsp45I GTSAC 4 cut(s) 110, 809, 1314, 1495
TspMI CCCGGG 1 cut(s) 62
TspRI CASTG 1 cut(s) 886
Tth111I GACNNNGTC 1 cut(s) 1071
Vha464I CTTAAG 2 cut(s) 742, 757
VpaK11BI GGWCC 2 cut(s) 1121, 1331
XapI RAATTY 3 cut(s) 198, 422, 1232
XceI RCATGY 2 cut(s) 148, 534
XcmI CCANNNNNNNNNTGG 1 cut(s) 600
XmaI CCCGGG 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 1192
XmnI GAANNNNTTC 2 cut(s) 768, 1110
XspI CTAG 2 cut(s) 215, 1376
ZraI GACGTC 1 cut(s) 739
Zsp2I ATGCAT 1 cut(s) 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.