Rw4G026380

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000094
Physical Location & Seq
Forward (+)
52597139 .. 52600618
3480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G026380.1

Sequence Viewer

Length: 1881 bp
ATGAGGTGTGAGGCTAGATATCTGGACGGTTCCCGACCTTTGGAGATTGGCGGTCCCAGTCAGGGGCCATCTAAGAGAATTGCCTCCAGTTCGGGTTCTGCCTCGTCATCAGGCAGTAGACCGAGCAGTTCAGATTCTAGCTCTCGTCAGCACTTCAGGGGAGGCTTCAGGAGGCTTGGGCAGACAGGTAGGAGACAGTTCAGGGGTGGCACTGCTAGTTCCAGTGGAGGCTTTGGTAGACAGGCGATTCCGAGGGACTATCCCCAGTGTGCTACTTGTGGTAGGCACCATGTGGGCCCGTGTCAGTCAGGTGTGGGGACTTGTTACCAGTGTGGCCAGTGGGGGATGGATTTCCTTCGGATGCATCATGCCTTAGTGGATTGCTTTTGTAGTACTGTATTATTTCGGAGTCCGGGTAAGCCAGTTGTCACCTTTTATGGTGAACGGGAGGTTCTCCCATCTTACATGATCTCAGCTTTAACTGCTAAGAAGATGTTGAGTGAGGAAGAATTGCCTGGATTGCCCCCGGTGCGAGAGATAGACTTTACCATTGATTTACTTCCAGGTACAACACCCATCTCTCAAGCACCTTATAGAATGGCACCGGCGGAACTAAAGGAAATTGCCGCTCCTCTTACTAAGTTGACGAGAAAGGGTGTCAGATTTGTTTGGTCTGAAAATTGTGAGCGGAGTTTCCAAGAACTTAAGAGTCGGCTGACTAGTGCTCCAATTTTATCCTTGCCTGATGATAGTGGGGAGTATGTAATTTACAGTGATGCCTCTAGACAAGGCTTAGGCTGTGTTCTAATGCAACATGGTAATAGACTCAAGTATGTGTTTACACAACCGAATTTAAATTTAAGACAACGAAGATGGATGGAATTGATTGAAGATTACGATTGTACCATTGAGTATCACCCCGGTAAAGCGAATGTGGTGGCGGATGCACTTAGTAGGAATCCATCCGTGACCTTGTCATATTTAAGGGCCACTCGAGTACCCCTATTGTCAGAGTTGAGGTTTACGGGGGTTGAATTATCGGTTGATGAGGTTGGTACTCTGGTAGCTAGTTTTCATGTGAGACCAGCATTTATTGATAAAATACGGGAAGCCCAGCCTCTTGATCCAAGAATTGAAGGGATTAAAGAAGGTGTTCGTGGTGGTTGGCAACTTGAGTTTTCTATTCGAAGAGATGGGACATTGATGTTTGGGAAGAGACGTTGTGTTCCTAACGTCGAAGCACTTAAACGAGAAATACTTGAAGAAGCGCATAACTCCGCGTATGCCCTGCATCCTGGTGGTACAAAAATGTATCGGACTCTCAAAGAGTACTATTGGTGGCCAAACATGAAAAGAGAAATTGCAGCTTTTGTGAATCGACTCACCAAATCAGCTCATTTTCTAGCAGTTAAGGAAACCTTTAGTTTGGATAAATTGGCAAAGTTGTATGTGGATGAAATTGTAAAGCTTCATGGTGTTCCCGAGTCCATTGTTTCTGATCATGATGCTCGATTCACATCAAAGTTTTGGAGGAAGGTTCACAAATTTATGGGAACAGAATTACAATTTAGCACTGCTTTCCATCCTCAAACTGATGGACAATCTGAGCGGACTATACAGACTTTGGAAGATATGTTGAGGGCTTGTTCTCTACAATTTAAAGGAAGTTGGGATAAGCATTTGGCTTTGATGGAGTTTGCTTATAACAACATTTACCATTCGAGTATCGGTATGGCTCCCTACGAAGTTTTGTATGGGAAACAGTGTAGGACCCCCTTGTGTTGGGATGAAGTGGGAGAAAGACAACTTATTGGTCCTGAAATTATTGAAATCACAACAGACAAAGTTAAAGTGATCAGAGAGAGACTTAAGACGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

626

Amino Acids

70.59

Weight (kDa)

9.09

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 224 - 275 1.1e-13 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 413 - 459 6.5e-14 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1704
AccB1I GGYRCC 2 cut(s) 285, 601
AccBSI CCGCTC 3 cut(s) 629, 688, 1609
AccI GTMKAC 2 cut(s) 118, 238
AccII CGCG 1 cut(s) 1280
AciI CCGC 7 cut(s) 51, 608, 627, 688, 941, 1278, 1609
AclWI GGATC 1 cut(s) 1118
AcoI YGGCCR 2 cut(s) 334, 1340
AcsI RAATTY 3 cut(s) 850, 856, 1544
AcuI CTGAAG 2 cut(s) 139, 151
AdeI CACNNNGTG 1 cut(s) 292
AfaI GTAC 7 cut(s) 394, 568, 904, 999, 1057, 1303, 1331
AfiI CCNNNNNNNGG 4 cut(s) 40, 62, 63, 1782
AflII CTTAAG 2 cut(s) 704, 1868
AgsI TTSAA 5 cut(s) 890, 1034, 1136, 1262, 1829
AhlI ACTAGT 1 cut(s) 719
AjnI CCWGG 3 cut(s) 514, 562, 1294
AluBI AGCT 6 cut(s) 141, 476, 1067, 1367, 1394, 1468
AluI AGCT 6 cut(s) 141, 476, 1067, 1367, 1394, 1468
Alw21I GWGCWC 1 cut(s) 727
Alw26I GTCTC 4 cut(s) 187, 1075, 1210, 1858
AlwI GGATC 1 cut(s) 1118
Ama87I CYCGRG 2 cut(s) 993, 1481
AoxI GGCC 6 cut(s) 65, 295, 334, 987, 1340, 1875
ApaI GGGCCC 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 1364
ApoI RAATTY 3 cut(s) 850, 856, 1544
Asp700I GAANNNNTTC 1 cut(s) 1152
AspLEI GCGC 1 cut(s) 1270
AspS9I GGNCC 7 cut(s) 53, 65, 295, 296, 987, 1770, 1814
AsuC2I CCSGG 3 cut(s) 414, 527, 921
AsuHPI GGTGA 4 cut(s) 421, 452, 908, 1375
AsuII TTCGAA 1 cut(s) 1186
AvaI CYCGRG 2 cut(s) 993, 1481
AvaII GGWCC 3 cut(s) 53, 1770, 1814
BaeGI GKGCMC 1 cut(s) 299
BaeI ACNNNNGTAYC 6 cut(s) 886, 919, 981, 1014, 1047, 1080
BalI TGGCCA 2 cut(s) 336, 1342
BanI GGYRCC 2 cut(s) 285, 601
BanII GRGCYC 1 cut(s) 299
Bbv12I GWGCWC 1 cut(s) 727
BbvI GCAGC 1 cut(s) 1376
BciT130I CCWGG 3 cut(s) 516, 564, 1296
BclI TGATCA 2 cut(s) 1498, 1854
BcnI CCSGG 3 cut(s) 414, 527, 921
BcoDI GTCTC 4 cut(s) 187, 1075, 1210, 1858
BcuI ACTAGT 1 cut(s) 719
BfaI CTAG 7 cut(s) 15, 138, 216, 720, 783, 1068, 1403
BfrI CTTAAG 2 cut(s) 704, 1868
BisI GCNGC 2 cut(s) 627, 1365
BlsI GCNGC 2 cut(s) 628, 1366
BmcAI AGTACT 2 cut(s) 394, 1331
Bme1390I CCNGG 6 cut(s) 414, 516, 527, 564, 921, 1296
Bme18I GGWCC 3 cut(s) 53, 1770, 1814
BmeT110I CYCGRG 2 cut(s) 993, 1481
BmgT120I GGNCC 7 cut(s) 53, 65, 295, 296, 987, 1770, 1814
BmiI GGNNCC 8 cut(s) 31, 55, 66, 287, 297, 603, 1737, 1772
BmrFI CCNGG 6 cut(s) 414, 516, 527, 564, 921, 1296
BmrI ACTGGG 2 cut(s) 51, 259
BmsI GCATC 6 cut(s) 351, 373, 766, 934, 1300, 1495
BmuI ACTGGG 2 cut(s) 51, 259
BpmI CTGGAG 1 cut(s) 70
Bpu10I CCTNAGC 1 cut(s) 793
Bpu14I TTCGAA 1 cut(s) 1186
BpuEI CTTGAG 3 cut(s) 567, 812, 1193
BpuMI CCSGG 3 cut(s) 414, 527, 921
BsaBI GATNNNNATC 1 cut(s) 1516
BsaI GGTCTC 1 cut(s) 1075
BsaJI CCNNGG 3 cut(s) 251, 525, 919
BsaXI ACNNNNNCTCC 4 cut(s) 400, 430, 709, 739
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 62, 63, 1782
Bse118I RCCGGY 1 cut(s) 604
Bse1I ACTGG 7 cut(s) 57, 87, 222, 265, 328, 337, 422
Bse8I GATNNNNATC 1 cut(s) 1516
BseBI CCWGG 3 cut(s) 516, 564, 1296
BseDI CCNNGG 3 cut(s) 251, 525, 919
BseGI GGATG 9 cut(s) 351, 366, 882, 949, 962, 1291, 1459, 1582, 1792
BseJI GATNNNNATC 1 cut(s) 1516
BseLI CCNNNNNNNGG 4 cut(s) 40, 62, 63, 1782
BseMII CTCAG 2 cut(s) 486, 1596
BseNI ACTGG 7 cut(s) 57, 87, 222, 265, 328, 337, 422
BseRI GAGGAG 1 cut(s) 621
BseSI GKGCMC 1 cut(s) 299
BseXI GCAGC 1 cut(s) 1376
BseYI CCCAGC 1 cut(s) 1113
Bsh1236I CGCG 1 cut(s) 1280
BshFI GGCC 6 cut(s) 67, 297, 336, 989, 1342, 1877
BshNI GGYRCC 2 cut(s) 285, 601
BsiHKAI GWGCWC 1 cut(s) 727
BsiHKCI CYCGRG 2 cut(s) 993, 1481
BsiSI CCGG 4 cut(s) 413, 527, 605, 921
BslFI GGGAC 4 cut(s) 39, 269, 331, 1210
BslI CCNNNNNNNGG 4 cut(s) 40, 62, 63, 1782
BsmAI GTCTC 4 cut(s) 187, 1075, 1210, 1858
BsmBI CGTCTC 1 cut(s) 1210
BsmFI GGGAC 4 cut(s) 39, 269, 331, 1210
BsnI GGCC 6 cut(s) 67, 297, 336, 989, 1342, 1877
Bso31I GGTCTC 1 cut(s) 1075
BsoBI CYCGRG 2 cut(s) 993, 1481
Bsp119I TTCGAA 1 cut(s) 1186
Bsp120I GGGCCC 1 cut(s) 295
Bsp1286I GDGCHC 2 cut(s) 299, 727
Bsp143I GATC 4 cut(s) 468, 1123, 1498, 1854
BspACI CCGC 7 cut(s) 51, 608, 627, 688, 941, 1278, 1609
BspANI GGCC 6 cut(s) 67, 297, 336, 989, 1342, 1877
BspCNI CTCAG 2 cut(s) 485, 1597
BspFNI CGCG 1 cut(s) 1280
BspHI TCATGA 1 cut(s) 1501
BspLI GGNNCC 8 cut(s) 31, 55, 66, 287, 297, 603, 1737, 1772
BspPI GGATC 1 cut(s) 1118
BspT104I TTCGAA 1 cut(s) 1186
BspT107I GGYRCC 2 cut(s) 285, 601
BspTI CTTAAG 2 cut(s) 704, 1868
BspTNI GGTCTC 1 cut(s) 1075
BsrBI CCGCTC 3 cut(s) 629, 688, 1609
BsrFI RCCGGY 1 cut(s) 604
BsrI ACTGG 7 cut(s) 57, 87, 222, 265, 328, 337, 422
BssAI RCCGGY 1 cut(s) 604
BssECI CCNNGG 3 cut(s) 251, 525, 919
BssMI GATC 4 cut(s) 468, 1123, 1498, 1854
Bst2UI CCWGG 3 cut(s) 516, 564, 1296
Bst4CI ACNGT 5 cut(s) 29, 198, 397, 773, 1764
Bst6I CTCTTC 2 cut(s) 1183, 1208
BstAFI CTTAAG 2 cut(s) 704, 1868
BstBI TTCGAA 1 cut(s) 1186
BstDEI CTNAG 8 cut(s) 72, 373, 472, 486, 639, 793, 950, 1605
BstF5I GGATG 9 cut(s) 351, 366, 882, 949, 962, 1291, 1459, 1582, 1792
BstFNI CGCG 1 cut(s) 1280
BstHHI GCGC 1 cut(s) 1270
BstKTI GATC 4 cut(s) 471, 1126, 1501, 1857
BstMAI GTCTC 4 cut(s) 187, 1075, 1210, 1858
BstMBI GATC 4 cut(s) 468, 1123, 1498, 1854
BstMWI GCNNNNNNNGC 3 cut(s) 482, 520, 529
BstNI CCWGG 3 cut(s) 516, 564, 1296
BstSCI CCNGG 6 cut(s) 412, 514, 525, 562, 919, 1294
BstSLI GKGCMC 1 cut(s) 299
BstUI CGCG 1 cut(s) 1280
BstV1I GCAGC 1 cut(s) 1376
BsuRI GGCC 6 cut(s) 67, 297, 336, 989, 1342, 1877
BtsCI GGATG 9 cut(s) 351, 366, 882, 949, 962, 1291, 1459, 1582, 1792
BtsI GCAGTG 2 cut(s) 210, 1572
BtsIMutI CAGTG 8 cut(s) 210, 229, 272, 335, 344, 778, 1572, 1769
CciI TCATGA 1 cut(s) 1501
CfoI GCGC 1 cut(s) 1270
Cfr10I RCCGGY 1 cut(s) 604
Cfr13I GGNCC 7 cut(s) 53, 65, 295, 296, 987, 1770, 1814
Csp6I GTAC 7 cut(s) 393, 567, 903, 998, 1056, 1302, 1330
CviAII CATG 8 cut(s) 290, 368, 466, 815, 1076, 1348, 1472, 1502
CviQI GTAC 7 cut(s) 393, 567, 903, 998, 1056, 1302, 1330
DdeI CTNAG 8 cut(s) 72, 373, 472, 486, 639, 793, 950, 1605
DpnI GATC 4 cut(s) 470, 1125, 1500, 1856
DpnII GATC 4 cut(s) 468, 1123, 1498, 1854
DraI TTTAAA 2 cut(s) 855, 1660
DraIII CACNNNGTG 1 cut(s) 292
EaeI YGGCCR 2 cut(s) 334, 1340
Eam1104I CTCTTC 2 cut(s) 1183, 1208
EarI CTCTTC 2 cut(s) 1183, 1208
EciI GGCGGA 2 cut(s) 623, 956
Eco24I GRGCYC 1 cut(s) 299
Eco31I GGTCTC 1 cut(s) 1075
Eco32I GATATC 1 cut(s) 20
Eco47I GGWCC 3 cut(s) 53, 1770, 1814
Eco57I CTGAAG 2 cut(s) 139, 151
Eco88I CYCGRG 2 cut(s) 993, 1481
EcoO109I RGGNCCY 1 cut(s) 1770
EcoRII CCWGG 3 cut(s) 514, 562, 1294
EcoRV GATATC 1 cut(s) 20
EcoT22I ATGCAT 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 299
Esp3I CGTCTC 1 cut(s) 1210
FaeI CATG 8 cut(s) 293, 371, 469, 818, 1079, 1351, 1475, 1505
FalI AAGNNNNNCTT 2 cut(s) 1403, 1435
FaqI GGGAC 4 cut(s) 39, 269, 331, 1210
FatI CATG 8 cut(s) 289, 367, 465, 814, 1075, 1347, 1471, 1501
FbaI TGATCA 2 cut(s) 1498, 1854
FblI GTMKAC 2 cut(s) 118, 238
Fnu4HI GCNGC 2 cut(s) 627, 1365
FokI GGATG 9 cut(s) 358, 373, 889, 949, 956, 1278, 1466, 1569, 1799
FriOI GRGCYC 1 cut(s) 299
Fsp4HI GCNGC 2 cut(s) 627, 1365
FspBI CTAG 7 cut(s) 15, 138, 216, 720, 783, 1068, 1403
GlaI GCGC 1 cut(s) 1269
GluI GCNGC 2 cut(s) 627, 1365
GsaI CCCAGC 1 cut(s) 1117
GsuI CTGGAG 1 cut(s) 70
HaeIII GGCC 6 cut(s) 67, 297, 336, 989, 1342, 1877
HapII CCGG 4 cut(s) 413, 527, 605, 921
HhaI GCGC 1 cut(s) 1270
Hin1II CATG 8 cut(s) 293, 371, 469, 818, 1079, 1351, 1475, 1505
Hin6I GCGC 1 cut(s) 1268
HinP1I GCGC 1 cut(s) 1268
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HindIII AAGCTT 1 cut(s) 1466
HpaII CCGG 4 cut(s) 413, 527, 605, 921
HphI GGTGA 4 cut(s) 421, 452, 908, 1375
Hpy166II GTNNAC 7 cut(s) 119, 239, 443, 645, 840, 1023, 1540
Hpy188III TCNNGA 8 cut(s) 23, 33, 169, 783, 1121, 1481, 1502, 1817
Hpy8I GTNNAC 7 cut(s) 119, 239, 443, 645, 840, 1023, 1540
Hpy99I CGWCG 1 cut(s) 1238
HpyAV CCTTC 4 cut(s) 365, 1130, 1142, 1528
HpyCH4III ACNGT 5 cut(s) 29, 198, 397, 773, 1764
HpyCH4IV ACGT 2 cut(s) 1219, 1233
HpyCH4V TGCA 5 cut(s) 364, 811, 947, 1291, 1364
HpyF10VI GCNNNNNNNGC 3 cut(s) 482, 520, 529
HpyF3I CTNAG 8 cut(s) 72, 373, 472, 486, 639, 793, 950, 1605
HpySE526I ACGT 2 cut(s) 1219, 1233
Hsp92II CATG 8 cut(s) 293, 371, 469, 818, 1079, 1351, 1475, 1505
HspAI GCGC 1 cut(s) 1268
Ksp22I TGATCA 2 cut(s) 1498, 1854
Kzo9I GATC 4 cut(s) 468, 1123, 1498, 1854
LmnI GCTCC 3 cut(s) 634, 730, 1741
Lsp1109I GCAGC 1 cut(s) 1376
LweI GCATC 6 cut(s) 351, 373, 766, 934, 1300, 1495
MaeI CTAG 7 cut(s) 15, 138, 216, 720, 783, 1068, 1403
MaeII ACGT 2 cut(s) 1219, 1233
MaeIII GTNAC 3 cut(s) 323, 427, 967
MalI GATC 4 cut(s) 470, 1125, 1500, 1856
MbiI CCGCTC 3 cut(s) 629, 688, 1609
MboI GATC 4 cut(s) 468, 1123, 1498, 1854
MboII GAAGA 8 cut(s) 502, 518, 882, 902, 1200, 1225, 1274, 1640
MhlI GDGCHC 2 cut(s) 299, 727
MlsI TGGCCA 2 cut(s) 336, 1342
MluNI TGGCCA 2 cut(s) 336, 1342
MlyI GAGTC 6 cut(s) 418, 718, 819, 1312, 1374, 1493
Mox20I TGGCCA 2 cut(s) 336, 1342
Mph1103I ATGCAT 1 cut(s) 366
MroXI GAANNNNTTC 1 cut(s) 1152
MscI TGGCCA 2 cut(s) 336, 1342
MslI CAYNNNNRTG 1 cut(s) 1296
Msp20I TGGCCA 2 cut(s) 336, 1342
MspCI CTTAAG 2 cut(s) 704, 1868
MspI CCGG 4 cut(s) 413, 527, 605, 921
MspR9I CCNGG 6 cut(s) 414, 516, 527, 564, 921, 1296
MvaI CCWGG 3 cut(s) 516, 564, 1296
MvnI CGCG 1 cut(s) 1280
MwoI GCNNNNNNNGC 3 cut(s) 482, 520, 529
NciI CCSGG 3 cut(s) 414, 527, 921
NdeII GATC 4 cut(s) 468, 1123, 1498, 1854
NlaIII CATG 8 cut(s) 293, 371, 469, 818, 1079, 1351, 1475, 1505
NlaIV GGNNCC 8 cut(s) 31, 55, 66, 287, 297, 603, 1737, 1772
NmuCI GTSAC 2 cut(s) 427, 967
NsiI ATGCAT 1 cut(s) 366
NspV TTCGAA 1 cut(s) 1186
PaeR7I CTCGAG 1 cut(s) 993
PagI TCATGA 1 cut(s) 1501
PdmI GAANNNNTTC 1 cut(s) 1152
PfeI GAWTC 5 cut(s) 134, 247, 958, 1375, 1512
PflFI GACNNNGTC 1 cut(s) 973
PkrI GCNGC 2 cut(s) 628, 1366
PleI GAGTC 6 cut(s) 417, 717, 819, 1312, 1374, 1492
PpsI GAGTC 6 cut(s) 417, 717, 819, 1312, 1374, 1492
PpuMI RGGWCCY 1 cut(s) 1770
PsiI TTATAA 1 cut(s) 1704
Psp5II RGGWCCY 1 cut(s) 1770
Psp6I CCWGG 3 cut(s) 514, 562, 1294
PspFI CCCAGC 1 cut(s) 1113
PspGI CCWGG 3 cut(s) 514, 562, 1294
PspN4I GGNNCC 8 cut(s) 31, 55, 66, 287, 297, 603, 1737, 1772
PspOMI GGGCCC 1 cut(s) 295
PspPI GGNCC 7 cut(s) 53, 65, 295, 296, 987, 1770, 1814
PspPPI RGGWCCY 1 cut(s) 1770
PspXI VCTCGAGB 1 cut(s) 993
PsyI GACNNNGTC 1 cut(s) 973
RsaI GTAC 7 cut(s) 394, 568, 904, 999, 1057, 1303, 1331
RsaNI GTAC 7 cut(s) 393, 567, 903, 998, 1056, 1302, 1330
RseI CAYNNNNRTG 1 cut(s) 1296
SatI GCNGC 2 cut(s) 627, 1365
Sau3AI GATC 4 cut(s) 468, 1123, 1498, 1854
Sau96I GGNCC 7 cut(s) 53, 65, 295, 296, 987, 1770, 1814
ScaI AGTACT 2 cut(s) 394, 1331
SchI GAGTC 6 cut(s) 418, 718, 819, 1312, 1374, 1493
ScrFI CCNGG 6 cut(s) 414, 516, 527, 564, 921, 1296
SduI GDGCHC 2 cut(s) 299, 727
SfaNI GCATC 6 cut(s) 351, 373, 766, 934, 1300, 1495
Sfr274I CTCGAG 1 cut(s) 993
SfuI TTCGAA 1 cut(s) 1186
SgrAI CRCCGGYG 1 cut(s) 604
SinI GGWCC 3 cut(s) 53, 1770, 1814
SlaI CTCGAG 1 cut(s) 993
SmiI ATTTAAAT 1 cut(s) 855
SmiMI CAYNNNNRTG 1 cut(s) 1296
SmlI CTYRAG 6 cut(s) 582, 704, 827, 993, 1172, 1868
SmoI CTYRAG 6 cut(s) 582, 704, 827, 993, 1172, 1868
SpeI ACTAGT 1 cut(s) 719
SsiI CCGC 7 cut(s) 51, 608, 627, 688, 941, 1278, 1609
SspMI CTAG 7 cut(s) 15, 138, 216, 720, 783, 1068, 1403
StyD4I CCNGG 6 cut(s) 412, 514, 525, 562, 919, 1294
SwaI ATTTAAAT 1 cut(s) 855
TaaI ACNGT 5 cut(s) 29, 198, 397, 773, 1764
TaiI ACGT 2 cut(s) 1222, 1236
TaqI TCGA 6 cut(s) 994, 1186, 1236, 1378, 1510, 1721
TaqII GACCGA 1 cut(s) 136
TatI WGTACW 2 cut(s) 392, 1329
TauI GCSGC 1 cut(s) 629
TfiI GAWTC 5 cut(s) 134, 247, 958, 1375, 1512
TscAI CASTG 8 cut(s) 217, 229, 272, 335, 344, 778, 1579, 1769
TseFI GTSAC 2 cut(s) 427, 967
TseI GCWGC 1 cut(s) 1364
Tsp45I GTSAC 2 cut(s) 427, 967
TspDTI ATGAA 5 cut(s) 1064, 1364, 1460, 1470, 1803
TspGWI ACGGA 1 cut(s) 955
TspRI CASTG 8 cut(s) 217, 229, 272, 335, 344, 778, 1579, 1769
Tth111I GACNNNGTC 1 cut(s) 973
Vha464I CTTAAG 2 cut(s) 704, 1868
VpaK11BI GGWCC 3 cut(s) 53, 1770, 1814
XapI RAATTY 3 cut(s) 850, 856, 1544
XbaI TCTAGA 1 cut(s) 782
XhoI CTCGAG 1 cut(s) 993
XmiI GTMKAC 2 cut(s) 118, 238
XmnI GAANNNNTTC 1 cut(s) 1152
XspI CTAG 7 cut(s) 15, 138, 216, 720, 783, 1068, 1403
ZrmI AGTACT 2 cut(s) 394, 1331
Zsp2I ATGCAT 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.