Rw3G009070

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000094
Physical Location & Seq
Forward (+)
8580170 .. 8583109
2940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G009070.1

Sequence Viewer

Length: 2688 bp
ATGCCTCCTAGACGCCGGACTCGTGGGGAGACCCCTCCCATTCCAGGAGATGAGCATACTCCTGCAGGAATAGCGGAAGCGTTGGGACGTATTGTGCAGCAGTTGACTGCAGCGCTTCCAGGCTCCAGAACTGACTTTACCATGGAGCGAGCGAAGAGGCATGGAGCTTATAGCTTCTCTCATGCTCCTGAGGCTATGGATGCCCAGAATTGGCTGAATAAAATGGAGAGAGTCTTCACTCAAATCCATTGCCCAGAGGATCGAAAAGTGAGTTTAGCGGTGGATTTTCTGGATGGTGTGGCTTATGATTGGTGGTCTTATTTGAGCAGGGATTTAGAGGTCGATGGCCCAATCACTTGGGAACAGTTCAAAGAGCACTTTAGTGAGAGATATTTTGGCACAGCCATTCGGGATAGGATGAAATATGAGTTCATGCATCTACAAAAAGGGGACATGACCGTAACAGAGTTTGAGCAGCGGTTCACCCAGCTAGCCCAGTTTGTGCCTGATATGGTTAGCACTGAGAGGGAGCGGATTTATAGGTTTGTGGATGCTTTGGGGGGTAAGTATTCTGACCAGCTGACAGGAGTGCCATTTAGTGATTATACTGAGGTCCACAGGGCTCCAGCTAGGCAGCCAGCCCCGTTTGGGCAATATCAGTCAGTCGGATGCTTTGAGTGTGGACAGCAGGGCCACTTTAGGAGGGATTGCCCTCTATTGACTCAGAGAGCTGCATTTACTCCTTATCAGGCCGCGGGTCAGTCTTCTGCCGGTACGTCTACTAGTGGTACCGTGGCTTCTACTGGCGGTACCCATCATAGTTCAGCAGCTCGTGGCAGCCCGCAGCGGGGTAGGGGTCAGAGAGGACGTCCTACCACTCAGGCTCGGTTGCATGCCATGACACAGCAGGAGGGCCACGACTCACCAGATGTTATCATTGGTACGTTGTCTGTTTTTGGTCAGCCTGCTTATACTTTAATTGATCCTGGTGCTTCGCATTCTTTTATGTCGAGTAGATTTGCATGTTTTGCGAATGTGCCATCATCACTCCTTATTGGTGAATGGAATGTATTATTACCTGCTGGAGCATCACTTAAGATAGAATGGGTTTTTAGAGGTTGTGATGTTTTGATTGAGGGTGTTAATTTGGAGGTTGATTTAATTCCATTAGACCTTGTTGAATTTGATGTGATTTTGGGGATGGAGTTCTTGGCGACTCATCGGGCCAATATTGATTGCTTTCGTAAGATTGTGGTCTTTCAAAGTCCAGGGAAGCCAATGATTACCTTTCAGGGAGAACGTAATGTTCTAGCTTCCTGTATGATTTCCACTTTGACCGCTGAGAAGCTGTTGAATAAGGGAAGTCAGGCTTATTTGGCACATGTGGTGGACACTAACAGGGAAGAGTTGAGTATTAGAGAGATACCAGTGGTTAGGAAATTTCCGGATGTATTTCCTGACGAATTACCTGGTTTACCTCCTGCTAGGGAGATAGATTTCACTATTGATTTACTCCCTGGCACCACACCCATATCTTTGGCACCATACAGAATGGCCCCAGCTGAATTAAGAGAGTTGAAGATTCAGTTGCAAGAACTAGTGGATAAGGGGTTCATCCAATCTAGTGTGTCTCCTTGGGGTGCCCCGGTTTTATTTGTCAAGAAGAAGGATGGTTCTTTACGGTTGTGCATTGATTATAGGAAGTTGAATAGGGTTACTGTGAAGAATAAATACCCTTTGCCTCGTATTGACGACCTCTTTGACCAGTTGAGGGGAGCCAAGGTATTTTCCAAGATCGATTTGAGGTCTGGTTACCATCAGTTGAGGATAAGAGAGTCTGATGTACCCAAGACTGCATTTCGATCACGTTATGGGCACTATGAATTCAGAGTGATGCCGTTTGGATTGACTAATGCCCCTGCAGCTTTTATGGACCTCATGAATAGAGTGTTCCGTCCGTACCTTGATCGATTTGTGATTGTGTTCATTGATGATATCTTGGTGTATTCAAAGGACAATAGTCAACATGCCAAACATCTAAGGATTGTATTGCGGACTTTGAGGGAGGCCCAGTTATTTGCAAAGTTCAATAAATGTGAGTTTTGGCTGAATAGTATTGGATTCTTGGGTCATGTAGTATCTGCAGAAGGAATTAGTGTAGACCCTCAGAAAGTAGTGGCGGTGCTAAATTGGGAAAGACCTACCACAGTGACAGAGATACGTAGTTTCTTGGGATTGGCAGGTTATTACCGGCGATTTGTGCAAGATTTCTCAAAGATTGCAACTCCTCTTACTAAGTTGACTAGAAAGGGTGTGAAGTTTGTTTGGTCAGAAGAGTGTGAGCAAAGTTTTCAAGAACTCAAGAGGCGTTTAACTAGTGCTCCGGTCCTAGTTTTGCCAGATGATAGTGGGGAGTATGTGGTATACAGTGACGCCTCGAGGCAAGGCTTGGGTTGCGTTCTAATGCAACATGGAAATGTGATTGCCTACGCCTCTAGACAATTGAAGCCACATGAGTTGAATTACCCGACACATGACCTTGAATTAGCTGCGGTAGTACTTGCACTTAAACTTTGGAGGCATTATTTATATGGAGCTCGGTGTCAAATCTTTACGGATCATAAGAGTCTTCAATATTTGCTCACACAAAAAGAGATTAATTTGAGGAAAGAAGATGGTTGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

895

Amino Acids

101.41

Weight (kDa)

8.58

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 67 - 186 9.7e-07 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 92 - 186 2.2e-16 Retrotransposon gag protein
RVP_2 PF08284 293 - 421 1e-29 Retroviral aspartyl protease
RVT_1 PF00078 553 - 712 8.6e-38 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 776 - 869 5.6e-31 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 802 - 889 1.1e-27 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 871
AbsI CCTCGAGG 1 cut(s) 2437
Acc36I ACCTGC 2 cut(s) 1087, 2231
Acc65I GGTACC 2 cut(s) 788, 809
AccB1I GGYRCC 5 cut(s) 788, 809, 1520, 1540, 1640
AccBSI CCGCTC 1 cut(s) 532
AccI GTMKAC 3 cut(s) 779, 2160, 2424
AccII CGCG 1 cut(s) 755
AccIII TCCGGA 1 cut(s) 1444
AclWI GGATC 3 cut(s) 267, 977, 2625
AcsI RAATTY 3 cut(s) 1181, 1439, 1883
AcyI GRCGYC 3 cut(s) 13, 868, 2433
AfaI GTAC 7 cut(s) 775, 790, 811, 943, 1845, 1961, 2559
AfeI AGCGCT 1 cut(s) 114
AfiI CCNNNNNNNGG 6 cut(s) 44, 210, 648, 847, 848, 1771
AflII CTTAAG 1 cut(s) 1094
AflIII ACRYGT 1 cut(s) 1381
AhlI ACTAGT 3 cut(s) 782, 1597, 2375
AjnI CCWGG 6 cut(s) 43, 118, 985, 1267, 1468, 1516
AleI CACNNNNGTG 1 cut(s) 381
AloI GAACNNNNNNTCC 2 cut(s) 1595, 1627
Alw21I GWGCWC 3 cut(s) 378, 2383, 2599
Alw26I GTCTC 2 cut(s) 23, 1635
AlwI GGATC 3 cut(s) 267, 977, 2625
Ama87I CYCGRG 1 cut(s) 2437
Aor13HI TCCGGA 1 cut(s) 1444
Aor51HI AGCGCT 1 cut(s) 114
AoxI GGCC 7 cut(s) 346, 691, 750, 913, 1224, 1554, 2067
ApoI RAATTY 3 cut(s) 1181, 1439, 1883
ArsI GACNNNNNNTTYG 2 cut(s) 1742, 1774
AseI ATTAAT 1 cut(s) 2658
Asp718I GGTACC 2 cut(s) 788, 809
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 9 cut(s) 347, 613, 691, 913, 1224, 1555, 1933, 2068, 2386
AsuC2I CCSGG 1 cut(s) 1646
AsuHPI GGTGA 3 cut(s) 475, 915, 1070
AsuNHI GCTAGC 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 2437
AvaII GGWCC 3 cut(s) 613, 1933, 2386
AxyI CCTNAGG 1 cut(s) 189
BaeGI GKGCMC 2 cut(s) 1645, 1878
BanI GGYRCC 5 cut(s) 788, 809, 1520, 1540, 1640
BanII GRGCYC 2 cut(s) 625, 2599
BarI GAAGNNNNNNTAC 4 cut(s) 781, 813, 1715, 1747
BauI CACGAG 2 cut(s) 21, 831
BbsI GAAGAC 3 cut(s) 226, 756, 2621
Bbv12I GWGCWC 3 cut(s) 378, 2383, 2599
BccI CCATC 8 cut(s) 287, 338, 822, 1048, 1195, 1664, 1824, 2669
BceAI ACGGC 1 cut(s) 1882
BciT130I CCWGG 6 cut(s) 45, 120, 987, 1269, 1470, 1518
BcnI CCSGG 1 cut(s) 1646
BcoDI GTCTC 2 cut(s) 23, 1635
BcuI ACTAGT 3 cut(s) 782, 1597, 2375
BfmI CTRYAG 4 cut(s) 63, 108, 1920, 2142
BfoI RGCGCY 1 cut(s) 116
BfrI CTTAAG 1 cut(s) 1094
BfuAI ACCTGC 2 cut(s) 1087, 2231
BmcAI AGTACT 1 cut(s) 2559
Bme1390I CCNGG 7 cut(s) 45, 120, 987, 1269, 1470, 1518, 1646
Bme18I GGWCC 3 cut(s) 613, 1933, 2386
BmeT110I CYCGRG 1 cut(s) 2437
BmgT120I GGNCC 9 cut(s) 347, 613, 691, 913, 1224, 1555, 1933, 2068, 2386
BmiI GGNNCC 9 cut(s) 124, 624, 790, 811, 1522, 1542, 1557, 1642, 1777
BmrFI CCNGG 7 cut(s) 45, 120, 987, 1269, 1470, 1518, 1646
BmrI ACTGGG 2 cut(s) 490, 2065
BmsI GCATC 6 cut(s) 190, 445, 541, 659, 1097, 1884
BmtI GCTAGC 1 cut(s) 494
BmuI ACTGGG 2 cut(s) 490, 2065
BoxI GACNNNNGTC 1 cut(s) 2019
BpiI GAAGAC 3 cut(s) 226, 756, 2621
BpmI CTGGAG 3 cut(s) 109, 609, 1104
BpuEI CTTGAG 1 cut(s) 2345
BpuMI CCSGG 1 cut(s) 1646
Bsa29I ATCGAT 2 cut(s) 1797, 1969
BsaAI YACGTR 1 cut(s) 2222
BsaHI GRCGYC 3 cut(s) 13, 868, 2433
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 8 cut(s) 141, 753, 792, 1268, 1516, 1634, 1644, 1779
BsaWI WCCGGW 2 cut(s) 1444, 2383
BsaXI ACNNNNNCTCC 6 cut(s) 1767, 1797, 2057, 2087, 2365, 2395
Bsc4I CCNNNNNNNGG 6 cut(s) 44, 210, 648, 847, 848, 1771
Bse118I RCCGGY 2 cut(s) 770, 2250
Bse1I ACTGG 5 cut(s) 496, 808, 1427, 1765, 2071
Bse21I CCTNAGG 1 cut(s) 189
Bse3DI GCAATG 1 cut(s) 247
BseAI TCCGGA 1 cut(s) 1444
BseBI CCWGG 6 cut(s) 45, 120, 987, 1269, 1470, 1518
BseCI ATCGAT 2 cut(s) 1797, 1969
BseDI CCNNGG 8 cut(s) 141, 753, 792, 1268, 1516, 1634, 1644, 1779
BseGI GGATG 9 cut(s) 205, 298, 423, 556, 674, 1206, 1453, 1614, 1675
BseLI CCNNNNNNNGG 6 cut(s) 44, 210, 648, 847, 848, 1771
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 7 cut(s) 180, 513, 600, 737, 893, 1332, 2180
BseNI ACTGG 5 cut(s) 496, 808, 1427, 1765, 2071
BseRI GAGGAG 1 cut(s) 2277
BseSI GKGCMC 2 cut(s) 1645, 1878
BseYI CCCAGC 2 cut(s) 486, 1558
BsgI GTGCAG 1 cut(s) 116
Bsh1236I CGCG 1 cut(s) 755
BshFI GGCC 7 cut(s) 348, 693, 752, 915, 1226, 1556, 2069
BshNI GGYRCC 5 cut(s) 788, 809, 1520, 1540, 1640
BshVI ATCGAT 2 cut(s) 1797, 1969
BsiHKAI GWGCWC 3 cut(s) 378, 2383, 2599
BsiHKCI CYCGRG 1 cut(s) 2437
BsiSI CCGG 6 cut(s) 16, 771, 1445, 1646, 2251, 2384
BslFI GGGAC 2 cut(s) 99, 464
BslI CCNNNNNNNGG 6 cut(s) 44, 210, 648, 847, 848, 1771
BsmAI GTCTC 2 cut(s) 23, 1635
BsmFI GGGAC 2 cut(s) 99, 464
BsmI GAATGC 1 cut(s) 997
BsnI GGCC 7 cut(s) 348, 693, 752, 915, 1226, 1556, 2069
Bso31I GGTCTC 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 2437
Bsp1286I GDGCHC 6 cut(s) 378, 625, 1645, 1878, 2383, 2599
Bsp13I TCCGGA 1 cut(s) 1444
Bsp143I GATC 6 cut(s) 259, 982, 1794, 1862, 1966, 2617
Bsp19I CCATGG 1 cut(s) 141
BspANI GGCC 7 cut(s) 348, 693, 752, 915, 1226, 1556, 2069
BspCNI CTCAG 7 cut(s) 181, 514, 601, 736, 892, 1333, 2179
BspDI ATCGAT 2 cut(s) 1797, 1969
BspEI TCCGGA 1 cut(s) 1444
BspFNI CGCG 1 cut(s) 755
BspHI TCATGA 1 cut(s) 1938
BspLI GGNNCC 9 cut(s) 124, 624, 790, 811, 1522, 1542, 1557, 1642, 1777
BspMAI CTGCAG 4 cut(s) 67, 112, 1924, 2146
BspMI ACCTGC 2 cut(s) 1087, 2231
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 3 cut(s) 267, 977, 2625
BspT107I GGYRCC 5 cut(s) 788, 809, 1520, 1540, 1640
BspTI CTTAAG 1 cut(s) 1094
BspTNI GGTCTC 1 cut(s) 23
BsrBI CCGCTC 1 cut(s) 532
BsrDI GCAATG 1 cut(s) 247
BsrFI RCCGGY 2 cut(s) 770, 2250
BsrI ACTGG 5 cut(s) 496, 808, 1427, 1765, 2071
BssAI RCCGGY 2 cut(s) 770, 2250
BssECI CCNNGG 8 cut(s) 141, 753, 792, 1268, 1516, 1634, 1644, 1779
BssMI GATC 6 cut(s) 259, 982, 1794, 1862, 1966, 2617
BssNAI GTATAC 1 cut(s) 2425
BssNI GRCGYC 3 cut(s) 13, 868, 2433
BssSI CACGAG 2 cut(s) 21, 831
BssT1I CCWWGG 3 cut(s) 141, 1634, 1779
Bst1107I GTATAC 1 cut(s) 2425
Bst2BI CACGAG 2 cut(s) 21, 831
Bst2UI CCWGG 6 cut(s) 45, 120, 987, 1269, 1470, 1518
Bst4CI ACNGT 7 cut(s) 366, 460, 793, 1683, 1720, 2209, 2429
Bst6I CTCTTC 3 cut(s) 149, 1398, 2328
BstACI GRCGYC 3 cut(s) 13, 868, 2433
BstAFI CTTAAG 1 cut(s) 1094
BstAPI GCANNNNNTGC 1 cut(s) 1028
BstBAI YACGTR 1 cut(s) 2222
BstC8I GCNNGC 6 cut(s) 150, 492, 639, 842, 894, 966
BstDEI CTNAG 9 cut(s) 189, 522, 609, 723, 879, 1341, 2039, 2166, 2295
BstDSI CCRYGG 3 cut(s) 141, 753, 792
BstEII GGTNACC 1 cut(s) 1811
BstF5I GGATG 9 cut(s) 205, 298, 423, 556, 674, 1206, 1453, 1614, 1675
BstFNI CGCG 1 cut(s) 755
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 6 cut(s) 262, 985, 1797, 1865, 1969, 2620
BstMAI GTCTC 2 cut(s) 23, 1635
BstMBI GATC 6 cut(s) 259, 982, 1794, 1862, 1966, 2617
BstMWI GCNNNNNNNGC 8 cut(s) 71, 191, 200, 1028, 1376, 1922, 2260, 2454
BstNI CCWGG 6 cut(s) 45, 120, 987, 1269, 1470, 1518
BstNSI RCATGY 4 cut(s) 896, 1026, 1385, 2030
BstPAI GACNNNNGTC 1 cut(s) 2019
BstPI GGTNACC 1 cut(s) 1811
BstSCI CCNGG 7 cut(s) 43, 118, 985, 1267, 1468, 1516, 1644
BstSFI CTRYAG 4 cut(s) 63, 108, 1920, 2142
BstSLI GKGCMC 2 cut(s) 1645, 1878
BstSNI TACGTA 1 cut(s) 2222
BstUI CGCG 1 cut(s) 755
BstV2I GAAGAC 3 cut(s) 226, 756, 2621
BstXI CCANNNNNNTGG 2 cut(s) 357, 1537
BstZ17I GTATAC 1 cut(s) 2425
Bsu15I ATCGAT 2 cut(s) 1797, 1969
Bsu36I CCTNAGG 1 cut(s) 189
BsuRI GGCC 7 cut(s) 348, 693, 752, 915, 1226, 1556, 2069
BsuTUI ATCGAT 2 cut(s) 1797, 1969
BtgI CCRYGG 3 cut(s) 141, 753, 792
BtsCI GGATG 9 cut(s) 205, 298, 423, 556, 674, 1206, 1453, 1614, 1675
BtsIMutI CAGTG 4 cut(s) 519, 1434, 2214, 2434
BveI ACCTGC 2 cut(s) 1087, 2231
Cac8I GCNNGC 6 cut(s) 150, 492, 639, 842, 894, 966
CciI TCATGA 1 cut(s) 1938
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 2 cut(s) 770, 2250
Cfr13I GGNCC 9 cut(s) 347, 613, 691, 913, 1224, 1555, 1933, 2068, 2386
Cfr42I CCGCGG 1 cut(s) 756
ClaI ATCGAT 2 cut(s) 1797, 1969
CseI GACGC 2 cut(s) 21, 2441
CsiI ACCWGGT 1 cut(s) 1468
Csp6I GTAC 7 cut(s) 774, 789, 810, 942, 1844, 1960, 2558
CspCI CAANNNNNGTGG 2 cut(s) 2499, 2534
CviQI GTAC 7 cut(s) 774, 789, 810, 942, 1844, 1960, 2558
DdeI CTNAG 9 cut(s) 189, 522, 609, 723, 879, 1341, 2039, 2166, 2295
DpnI GATC 6 cut(s) 261, 984, 1796, 1864, 1968, 2619
DpnII GATC 6 cut(s) 259, 982, 1794, 1862, 1966, 2617
Eam1104I CTCTTC 3 cut(s) 149, 1398, 2328
EarI CTCTTC 3 cut(s) 149, 1398, 2328
Ecl136II GAGCTC 1 cut(s) 2597
Eco105I TACGTA 1 cut(s) 2222
Eco130I CCWWGG 3 cut(s) 141, 1634, 1779
Eco24I GRGCYC 2 cut(s) 625, 2599
Eco31I GGTCTC 1 cut(s) 23
Eco32I GATATC 1 cut(s) 1996
Eco47I GGWCC 3 cut(s) 613, 1933, 2386
Eco47III AGCGCT 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 2597
Eco81I CCTNAGG 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 2437
Eco91I GGTNACC 1 cut(s) 1811
EcoICRI GAGCTC 1 cut(s) 2597
EcoO65I GGTNACC 1 cut(s) 1811
EcoRI GAATTC 1 cut(s) 1883
EcoRII CCWGG 6 cut(s) 43, 118, 985, 1267, 1468, 1516
EcoRV GATATC 1 cut(s) 1996
EcoT14I CCWWGG 3 cut(s) 141, 1634, 1779
EcoT22I ATGCAT 1 cut(s) 438
EcoT38I GRGCYC 2 cut(s) 625, 2599
ErhI CCWWGG 3 cut(s) 141, 1634, 1779
FalI AAGNNNNNCTT 2 cut(s) 1354, 1386
FaqI GGGAC 2 cut(s) 99, 464
FauI CCCGC 3 cut(s) 748, 840, 849
FblI GTMKAC 3 cut(s) 779, 2160, 2424
FokI GGATG 9 cut(s) 212, 305, 430, 563, 681, 1213, 1460, 1601, 1682
FriOI GRGCYC 2 cut(s) 625, 2599
GlaI GCGC 1 cut(s) 114
GsaI CCCAGC 2 cut(s) 490, 1562
GsuI CTGGAG 3 cut(s) 109, 609, 1104
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 7 cut(s) 348, 693, 752, 915, 1226, 1556, 2069
HapII CCGG 6 cut(s) 16, 771, 1445, 1646, 2251, 2384
HgaI GACGC 2 cut(s) 21, 2441
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 3 cut(s) 13, 868, 2433
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 3 cut(s) 105, 2024, 2301
HindII GTYRAC 3 cut(s) 105, 2024, 2301
HinfI GANTC 9 cut(s) 19, 231, 721, 920, 1216, 1582, 1835, 2121, 2626
HpaII CCGG 6 cut(s) 16, 771, 1445, 1646, 2251, 2384
HphI GGTGA 3 cut(s) 475, 915, 1070
Hpy188I TCNGA 8 cut(s) 574, 668, 726, 861, 1840, 1889, 2169, 2332
HpyAV CCTTC 2 cut(s) 1660, 2141
HpyCH4III ACNGT 7 cut(s) 366, 460, 793, 1683, 1720, 2209, 2429
HpyCH4IV ACGT 7 cut(s) 88, 776, 868, 944, 1300, 1867, 2221
HpyF10VI GCNNNNNNNGC 8 cut(s) 71, 191, 200, 1028, 1376, 1922, 2260, 2454
HpyF3I CTNAG 9 cut(s) 189, 522, 609, 723, 879, 1341, 2039, 2166, 2295
HpySE526I ACGT 7 cut(s) 88, 776, 868, 944, 1300, 1867, 2221
Hsp92I GRCGYC 3 cut(s) 13, 868, 2433
HspAI GCGC 1 cut(s) 113
Kpn2I TCCGGA 1 cut(s) 1444
KpnI GGTACC 2 cut(s) 792, 813
KspI CCGCGG 1 cut(s) 756
Kzo9I GATC 6 cut(s) 259, 982, 1794, 1862, 1966, 2617
LweI GCATC 6 cut(s) 190, 445, 541, 659, 1097, 1884
MabI ACCWGGT 1 cut(s) 1468
MaeII ACGT 7 cut(s) 88, 776, 868, 944, 1300, 1867, 2221
MaeIII GTNAC 5 cut(s) 460, 1714, 1811, 2209, 2429
MalI GATC 6 cut(s) 261, 984, 1796, 1864, 1968, 2619
MbiI CCGCTC 1 cut(s) 532
MboI GATC 6 cut(s) 259, 982, 1794, 1862, 1966, 2617
MfeI CAATTG 1 cut(s) 2501
MhlI GDGCHC 6 cut(s) 378, 625, 1645, 1878, 2383, 2599
MlyI GAGTC 7 cut(s) 13, 240, 715, 914, 1210, 1844, 2635
MmeI TCCRAC 2 cut(s) 646, 2660
Mph1103I ATGCAT 1 cut(s) 438
MroI TCCGGA 1 cut(s) 1444
MseI TTAA 8 cut(s) 977, 1095, 1143, 1160, 1568, 2372, 2568, 2658
MslI CAYNNNNRTG 2 cut(s) 381, 2475
MspA1I CMGCKG 6 cut(s) 478, 580, 755, 847, 1340, 1562
MspCI CTTAAG 1 cut(s) 1094
MspI CCGG 6 cut(s) 16, 771, 1445, 1646, 2251, 2384
MspR9I CCNGG 7 cut(s) 45, 120, 987, 1269, 1470, 1518, 1646
MunI CAATTG 1 cut(s) 2501
Mva1269I GAATGC 1 cut(s) 997
MvaI CCWGG 6 cut(s) 45, 120, 987, 1269, 1470, 1518
MvnI CGCG 1 cut(s) 755
MwoI GCNNNNNNNGC 8 cut(s) 71, 191, 200, 1028, 1376, 1922, 2260, 2454
NciI CCSGG 1 cut(s) 1646
NcoI CCATGG 1 cut(s) 141
NdeII GATC 6 cut(s) 259, 982, 1794, 1862, 1966, 2617
NheI GCTAGC 1 cut(s) 490
NlaIV GGNNCC 9 cut(s) 124, 624, 790, 811, 1522, 1542, 1557, 1642, 1777
NmuCI GTSAC 2 cut(s) 2209, 2429
NsiI ATGCAT 1 cut(s) 438
NspI RCATGY 4 cut(s) 896, 1026, 1385, 2030
OliI CACNNNNGTG 1 cut(s) 381
PaeI GCATGC 1 cut(s) 896
PaeR7I CTCGAG 1 cut(s) 2437
PagI TCATGA 1 cut(s) 1938
PciI ACATGT 1 cut(s) 1381
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PctI GAATGC 1 cut(s) 997
PfeI GAWTC 2 cut(s) 1582, 2121
PfoI TCCNGGA 1 cut(s) 43
PleI GAGTC 7 cut(s) 13, 239, 715, 914, 1210, 1843, 2634
PpsI GAGTC 7 cut(s) 13, 239, 715, 914, 1210, 1843, 2634
Ppu21I YACGTR 1 cut(s) 2222
PscI ACATGT 1 cut(s) 1381
PshAI GACNNNNGTC 1 cut(s) 2019
PshBI ATTAAT 1 cut(s) 2658
Psp124BI GAGCTC 1 cut(s) 2599
Psp6I CCWGG 6 cut(s) 43, 118, 985, 1267, 1468, 1516
PspEI GGTNACC 1 cut(s) 1811
PspFI CCCAGC 2 cut(s) 486, 1558
PspGI CCWGG 6 cut(s) 43, 118, 985, 1267, 1468, 1516
PspN4I GGNNCC 9 cut(s) 124, 624, 790, 811, 1522, 1542, 1557, 1642, 1777
PspPI GGNCC 9 cut(s) 347, 613, 691, 913, 1224, 1555, 1933, 2068, 2386
PspXI VCTCGAGB 1 cut(s) 2437
PsrI GAACNNNNNNTAC 2 cut(s) 121, 153
PstI CTGCAG 4 cut(s) 67, 112, 1924, 2146
PvuII CAGCTG 2 cut(s) 580, 1562
RsaI GTAC 7 cut(s) 775, 790, 811, 943, 1845, 1961, 2559
RsaNI GTAC 7 cut(s) 774, 789, 810, 942, 1844, 1960, 2558
RseI CAYNNNNRTG 2 cut(s) 381, 2475
SacI GAGCTC 1 cut(s) 2599
SacII CCGCGG 1 cut(s) 756
SaqAI TTAA 8 cut(s) 977, 1095, 1143, 1160, 1568, 2372, 2568, 2658
Sau3AI GATC 6 cut(s) 259, 982, 1794, 1862, 1966, 2617
Sau96I GGNCC 9 cut(s) 347, 613, 691, 913, 1224, 1555, 1933, 2068, 2386
SbfI CCTGCAGG 1 cut(s) 67
ScaI AGTACT 1 cut(s) 2559
SchI GAGTC 7 cut(s) 13, 240, 715, 914, 1210, 1844, 2635
ScrFI CCNGG 7 cut(s) 45, 120, 987, 1269, 1470, 1518, 1646
SdaI CCTGCAGG 1 cut(s) 67
SduI GDGCHC 6 cut(s) 378, 625, 1645, 1878, 2383, 2599
SexAI ACCWGGT 1 cut(s) 1468
SfaNI GCATC 6 cut(s) 190, 445, 541, 659, 1097, 1884
SfcI CTRYAG 4 cut(s) 63, 108, 1920, 2142
Sfr274I CTCGAG 1 cut(s) 2437
Sfr303I CCGCGG 1 cut(s) 756
SgrBI CCGCGG 1 cut(s) 756
SinI GGWCC 3 cut(s) 613, 1933, 2386
SlaI CTCGAG 1 cut(s) 2437
SmiMI CAYNNNNRTG 2 cut(s) 381, 2475
SmlI CTYRAG 3 cut(s) 1094, 2360, 2437
SmoI CTYRAG 3 cut(s) 1094, 2360, 2437
SnaBI TACGTA 1 cut(s) 2222
SpeI ACTAGT 3 cut(s) 782, 1597, 2375
SphI GCATGC 1 cut(s) 896
Sse8387I CCTGCAGG 1 cut(s) 67
SspI AATATT 2 cut(s) 1231, 2636
SstI GAGCTC 1 cut(s) 2599
StyD4I CCNGG 7 cut(s) 43, 118, 985, 1267, 1468, 1516, 1644
StyI CCWWGG 3 cut(s) 141, 1634, 1779
TaaI ACNGT 7 cut(s) 366, 460, 793, 1683, 1720, 2209, 2429
TaiI ACGT 7 cut(s) 91, 779, 871, 947, 1303, 1870, 2224
TaqI TCGA 7 cut(s) 262, 342, 1010, 1797, 1861, 1969, 2438
TatI WGTACW 1 cut(s) 2557
TauI GCSGC 1 cut(s) 755
TfiI GAWTC 2 cut(s) 1582, 2121
Tru1I TTAA 8 cut(s) 977, 1095, 1143, 1160, 1568, 2372, 2568, 2658
Tru9I TTAA 8 cut(s) 977, 1095, 1143, 1160, 1568, 2372, 2568, 2658
TscAI CASTG 4 cut(s) 526, 1434, 2214, 2434
TseFI GTSAC 2 cut(s) 2209, 2429
Tsp45I GTSAC 2 cut(s) 2209, 2429
TspDTI ATGAA 6 cut(s) 421, 434, 1603, 1896, 1955, 1975
TspGWI ACGGA 3 cut(s) 1943, 1947, 2630
TspRI CASTG 4 cut(s) 526, 1434, 2214, 2434
Vha464I CTTAAG 1 cut(s) 1094
VpaK11BI GGWCC 3 cut(s) 613, 1933, 2386
VspI ATTAAT 1 cut(s) 2658
XapI RAATTY 3 cut(s) 1181, 1439, 1883
XbaI TCTAGA 1 cut(s) 2495
XceI RCATGY 4 cut(s) 896, 1026, 1385, 2030
XhoI CTCGAG 1 cut(s) 2437
XmiI GTMKAC 3 cut(s) 779, 2160, 2424
ZraI GACGTC 1 cut(s) 869
ZrmI AGTACT 1 cut(s) 2559
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.