transposition, RNA-mediated
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 584 |
| Acc36I | ACCTGC | 1 cut(s) | 543 |
| AccI | GTMKAC | 1 cut(s) | 19 |
| AccII | CGCG | 1 cut(s) | 471 |
| AciI | CCGC | 6 cut(s) | 507, 624, 677, 683, 744, 759 |
| AcsI | RAATTY | 2 cut(s) | 135, 733 |
| AcuI | CTGAAG | 1 cut(s) | 18 |
| AfaI | GTAC | 1 cut(s) | 352 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 14, 315, 316, 353, 541 |
| AgsI | TTSAA | 3 cut(s) | 400, 409, 416 |
| AjiI | CACGTC | 1 cut(s) | 253 |
| AjnI | CCWGG | 4 cut(s) | 97, 298, 346, 538 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 178, 210 |
| AluBI | AGCT | 6 cut(s) | 146, 161, 437, 446, 522, 549 |
| AluI | AGCT | 6 cut(s) | 146, 161, 437, 446, 522, 549 |
| Alw26I | GTCTC | 4 cut(s) | 695, 712, 756, 773 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 704 |
| Ama87I | CYCGRG | 1 cut(s) | 225 |
| AoxI | GGCC | 1 cut(s) | 384 |
| ApoI | RAATTY | 2 cut(s) | 135, 733 |
| AspLEI | GCGC | 4 cut(s) | 471, 634, 693, 754 |
| AspS9I | GGNCC | 2 cut(s) | 356, 385 |
| AsuC2I | CCSGG | 1 cut(s) | 497 |
| AsuHPI | GGTGA | 5 cut(s) | 250, 322, 491, 502, 580 |
| AsuNHI | GCTAGC | 2 cut(s) | 679, 740 |
| AvaI | CYCGRG | 1 cut(s) | 225 |
| AvaII | GGWCC | 1 cut(s) | 356 |
| AxyI | CCTNAGG | 1 cut(s) | 60 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 213, 246 |
| BbsI | GAAGAC | 2 cut(s) | 255, 648 |
| BccI | CCATC | 4 cut(s) | 376, 594, 653, 714 |
| BciT130I | CCWGG | 4 cut(s) | 99, 300, 348, 540 |
| BcnI | CCSGG | 1 cut(s) | 497 |
| BcoDI | GTCTC | 4 cut(s) | 695, 712, 756, 773 |
| BfaI | CTAG | 6 cut(s) | 434, 584, 621, 680, 741, 756 |
| BfmI | CTRYAG | 1 cut(s) | 390 |
| BfuAI | ACCTGC | 1 cut(s) | 543 |
| BlpI | GCTNAGC | 2 cut(s) | 518, 694 |
| Bme1390I | CCNGG | 5 cut(s) | 99, 300, 348, 497, 540 |
| Bme18I | GGWCC | 1 cut(s) | 356 |
| BmeT110I | CYCGRG | 1 cut(s) | 225 |
| BmgBI | CACGTC | 1 cut(s) | 253 |
| BmgT120I | GGNCC | 2 cut(s) | 356, 385 |
| BmiI | GGNNCC | 2 cut(s) | 129, 387 |
| BmrFI | CCNGG | 5 cut(s) | 99, 300, 348, 497, 540 |
| BmsI | GCATC | 1 cut(s) | 442 |
| BmtI | GCTAGC | 2 cut(s) | 683, 744 |
| BpiI | GAAGAC | 2 cut(s) | 255, 648 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 692, 724, 753, 785 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 518, 694 |
| BpuEI | CTTGAG | 1 cut(s) | 351 |
| BpuMI | CCSGG | 1 cut(s) | 497 |
| BsaJI | CCNNGG | 2 cut(s) | 496, 539 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 85, 115, 227, 257 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 14, 315, 316, 353, 541 |
| Bse118I | RCCGGY | 1 cut(s) | 572 |
| Bse21I | CCTNAGG | 1 cut(s) | 60 |
| Bse3DI | GCAATG | 1 cut(s) | 58 |
| BseBI | CCWGG | 4 cut(s) | 99, 300, 348, 540 |
| BseDI | CCNNGG | 2 cut(s) | 496, 539 |
| BseGI | GGATG | 3 cut(s) | 70, 197, 387 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 14, 315, 316, 353, 541 |
| BseMI | GCAATG | 1 cut(s) | 58 |
| BseMII | CTCAG | 2 cut(s) | 51, 303 |
| Bsh1236I | CGCG | 1 cut(s) | 471 |
| BshFI | GGCC | 1 cut(s) | 386 |
| BsiHKCI | CYCGRG | 1 cut(s) | 225 |
| BsiSI | CCGG | 2 cut(s) | 496, 573 |
| BslFI | GGGAC | 1 cut(s) | 281 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 14, 315, 316, 353, 541 |
| BsmAI | GTCTC | 4 cut(s) | 695, 712, 756, 773 |
| BsmFI | GGGAC | 1 cut(s) | 281 |
| BsnI | GGCC | 1 cut(s) | 386 |
| BsoBI | CYCGRG | 1 cut(s) | 225 |
| Bsp143I | GATC | 1 cut(s) | 481 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 518, 694 |
| BspACI | CCGC | 6 cut(s) | 507, 624, 677, 683, 744, 759 |
| BspANI | GGCC | 1 cut(s) | 386 |
| BspCNI | CTCAG | 2 cut(s) | 52, 304 |
| BspFNI | CGCG | 1 cut(s) | 471 |
| BspLI | GGNNCC | 2 cut(s) | 129, 387 |
| BspMI | ACCTGC | 1 cut(s) | 543 |
| BspOI | GCTAGC | 2 cut(s) | 683, 744 |
| BsrDI | GCAATG | 1 cut(s) | 58 |
| BsrFI | RCCGGY | 1 cut(s) | 572 |
| BssAI | RCCGGY | 1 cut(s) | 572 |
| BssECI | CCNNGG | 2 cut(s) | 496, 539 |
| BssMI | GATC | 1 cut(s) | 481 |
| Bst2UI | CCWGG | 4 cut(s) | 99, 300, 348, 540 |
| Bst4CI | ACNGT | 4 cut(s) | 581, 647, 706, 767 |
| BstC8I | GCNNGC | 8 cut(s) | 49, 148, 515, 594, 653, 681, 714, 742 |
| BstDEI | CTNAG | 6 cut(s) | 60, 312, 518, 635, 694, 774 |
| BstEII | GGTNACC | 1 cut(s) | 568 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 351 |
| BstF5I | GGATG | 3 cut(s) | 70, 197, 387 |
| BstFNI | CGCG | 1 cut(s) | 471 |
| BstHHI | GCGC | 4 cut(s) | 471, 634, 693, 754 |
| BstKTI | GATC | 1 cut(s) | 484 |
| BstMAI | GTCTC | 4 cut(s) | 695, 712, 756, 773 |
| BstMBI | GATC | 1 cut(s) | 481 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 167, 206, 443, 452, 461, 519 |
| BstNI | CCWGG | 4 cut(s) | 99, 300, 348, 540 |
| BstPI | GGTNACC | 1 cut(s) | 568 |
| BstSCI | CCNGG | 5 cut(s) | 97, 298, 346, 495, 538 |
| BstSFI | CTRYAG | 1 cut(s) | 390 |
| BstUI | CGCG | 1 cut(s) | 471 |
| BstV2I | GAAGAC | 2 cut(s) | 255, 648 |
| Bsu36I | CCTNAGG | 1 cut(s) | 60 |
| BsuRI | GGCC | 1 cut(s) | 386 |
| BtrI | CACGTC | 1 cut(s) | 253 |
| BtsCI | GGATG | 3 cut(s) | 70, 197, 387 |
| BtsIMutI | CAGTG | 1 cut(s) | 783 |
| BveI | ACCTGC | 1 cut(s) | 543 |
| Cac8I | GCNNGC | 8 cut(s) | 49, 148, 515, 594, 653, 681, 714, 742 |
| CaiI | CAGNNNCTG | 1 cut(s) | 704 |
| CfoI | GCGC | 4 cut(s) | 471, 634, 693, 754 |
| Cfr10I | RCCGGY | 1 cut(s) | 572 |
| Cfr13I | GGNCC | 2 cut(s) | 356, 385 |
| CseI | GACGC | 1 cut(s) | 460 |
| Csp6I | GTAC | 1 cut(s) | 351 |
| CviAII | CATG | 1 cut(s) | 151 |
| CviQI | GTAC | 1 cut(s) | 351 |
| DdeI | CTNAG | 6 cut(s) | 60, 312, 518, 635, 694, 774 |
| DpnI | GATC | 1 cut(s) | 483 |
| DpnII | GATC | 1 cut(s) | 481 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 584 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 584 |
| Eco32I | GATATC | 1 cut(s) | 156 |
| Eco47I | GGWCC | 1 cut(s) | 356 |
| Eco57I | CTGAAG | 1 cut(s) | 18 |
| Eco81I | CCTNAGG | 1 cut(s) | 60 |
| Eco88I | CYCGRG | 1 cut(s) | 225 |
| Eco91I | GGTNACC | 1 cut(s) | 568 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 351 |
| EcoO109I | RGGNCCY | 1 cut(s) | 356 |
| EcoO65I | GGTNACC | 1 cut(s) | 568 |
| EcoRI | GAATTC | 1 cut(s) | 135 |
| EcoRII | CCWGG | 4 cut(s) | 97, 298, 346, 538 |
| EcoRV | GATATC | 1 cut(s) | 156 |
| FaeI | CATG | 1 cut(s) | 154 |
| FaiI | YATR | 8 cut(s) | 152, 164, 202, 213, 362, 376, 378, 558 |
| FaqI | GGGAC | 1 cut(s) | 281 |
| FatI | CATG | 1 cut(s) | 150 |
| FblI | GTMKAC | 1 cut(s) | 19 |
| FokI | GGATG | 3 cut(s) | 77, 204, 394 |
| FspBI | CTAG | 6 cut(s) | 434, 584, 621, 680, 741, 756 |
| GlaI | GCGC | 4 cut(s) | 470, 633, 692, 753 |
| HaeIII | GGCC | 1 cut(s) | 386 |
| HapII | CCGG | 2 cut(s) | 496, 573 |
| HgaI | GACGC | 1 cut(s) | 460 |
| HhaI | GCGC | 4 cut(s) | 471, 634, 693, 754 |
| Hin1II | CATG | 1 cut(s) | 154 |
| Hin6I | GCGC | 4 cut(s) | 469, 632, 691, 752 |
| HinP1I | GCGC | 4 cut(s) | 469, 632, 691, 752 |
| HincII | GTYRAC | 1 cut(s) | 20 |
| HindII | GTYRAC | 1 cut(s) | 20 |
| HinfI | GANTC | 2 cut(s) | 94, 412 |
| HpaII | CCGG | 2 cut(s) | 496, 573 |
| HphI | GGTGA | 5 cut(s) | 250, 322, 491, 502, 580 |
| Hpy166II | GTNNAC | 2 cut(s) | 20, 104 |
| Hpy188I | TCNGA | 2 cut(s) | 451, 476 |
| Hpy188III | TCNNGA | 2 cut(s) | 91, 233 |
| Hpy8I | GTNNAC | 2 cut(s) | 20, 104 |
| HpyAV | CCTTC | 3 cut(s) | 250, 394, 598 |
| HpyCH4III | ACNGT | 4 cut(s) | 581, 647, 706, 767 |
| HpyCH4IV | ACGT | 1 cut(s) | 252 |
| HpyCH4V | TGCA | 6 cut(s) | 150, 200, 421, 596, 655, 716 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 167, 206, 443, 452, 461, 519 |
| HpyF3I | CTNAG | 6 cut(s) | 60, 312, 518, 635, 694, 774 |
| HpySE526I | ACGT | 1 cut(s) | 252 |
| Hsp92II | CATG | 1 cut(s) | 154 |
| HspAI | GCGC | 4 cut(s) | 469, 632, 691, 752 |
| Kzo9I | GATC | 1 cut(s) | 481 |
| LmnI | GCTCC | 2 cut(s) | 127, 443 |
| LweI | GCATC | 1 cut(s) | 442 |
| MaeI | CTAG | 6 cut(s) | 434, 584, 621, 680, 741, 756 |
| MaeII | ACGT | 1 cut(s) | 252 |
| MaeIII | GTNAC | 3 cut(s) | 294, 339, 568 |
| MalI | GATC | 1 cut(s) | 483 |
| MboI | GATC | 1 cut(s) | 481 |
| MboII | GAAGA | 4 cut(s) | 131, 260, 421, 653 |
| MfeI | CAATTG | 2 cut(s) | 176, 416 |
| MluCI | AATT | 5 cut(s) | 135, 176, 416, 425, 733 |
| MlyI | GAGTC | 1 cut(s) | 103 |
| MnlI | CCTC | 8 cut(s) | 15, 18, 33, 55, 229, 258, 309, 470 |
| MseI | TTAA | 1 cut(s) | 273 |
| MspI | CCGG | 2 cut(s) | 496, 573 |
| MspR9I | CCNGG | 5 cut(s) | 99, 300, 348, 497, 540 |
| MunI | CAATTG | 2 cut(s) | 176, 416 |
| MvaI | CCWGG | 4 cut(s) | 99, 300, 348, 540 |
| MvnI | CGCG | 1 cut(s) | 471 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 167, 206, 443, 452, 461, 519 |
| NciI | CCSGG | 1 cut(s) | 497 |
| NdeII | GATC | 1 cut(s) | 481 |
| NheI | GCTAGC | 2 cut(s) | 679, 740 |
| NlaIII | CATG | 1 cut(s) | 154 |
| NlaIV | GGNNCC | 2 cut(s) | 129, 387 |
| NmeAIII | GCCGAG | 2 cut(s) | 156, 445 |
| NmuCI | GTSAC | 1 cut(s) | 568 |
| PaeR7I | CTCGAG | 1 cut(s) | 225 |
| PfeI | GAWTC | 1 cut(s) | 412 |
| PleI | GAGTC | 1 cut(s) | 102 |
| PpsI | GAGTC | 1 cut(s) | 102 |
| PpuMI | RGGWCCY | 1 cut(s) | 356 |
| Psp5II | RGGWCCY | 1 cut(s) | 356 |
| Psp6I | CCWGG | 4 cut(s) | 97, 298, 346, 538 |
| PspEI | GGTNACC | 1 cut(s) | 568 |
| PspGI | CCWGG | 4 cut(s) | 97, 298, 346, 538 |
| PspN4I | GGNNCC | 2 cut(s) | 129, 387 |
| PspPI | GGNCC | 2 cut(s) | 356, 385 |
| PspPPI | RGGWCCY | 1 cut(s) | 356 |
| PspXI | VCTCGAGB | 1 cut(s) | 225 |
| PstNI | CAGNNNCTG | 1 cut(s) | 704 |
| RsaI | GTAC | 1 cut(s) | 352 |
| RsaNI | GTAC | 1 cut(s) | 351 |
| SalI | GTCGAC | 1 cut(s) | 18 |
| SaqAI | TTAA | 1 cut(s) | 273 |
| Sau3AI | GATC | 1 cut(s) | 481 |
| Sau96I | GGNCC | 2 cut(s) | 356, 385 |
| SchI | GAGTC | 1 cut(s) | 103 |
| ScrFI | CCNGG | 5 cut(s) | 99, 300, 348, 497, 540 |
| SfaNI | GCATC | 1 cut(s) | 442 |
| SfcI | CTRYAG | 1 cut(s) | 390 |
| Sfr274I | CTCGAG | 1 cut(s) | 225 |
| SinI | GGWCC | 1 cut(s) | 356 |
| SlaI | CTCGAG | 1 cut(s) | 225 |
| SmlI | CTYRAG | 2 cut(s) | 225, 366 |
| SmoI | CTYRAG | 2 cut(s) | 225, 366 |
| Sse9I | AATT | 5 cut(s) | 135, 176, 416, 425, 733 |
| SsiI | CCGC | 6 cut(s) | 507, 624, 677, 683, 744, 759 |
| SspMI | CTAG | 6 cut(s) | 434, 584, 621, 680, 741, 756 |
| StyD4I | CCNGG | 5 cut(s) | 97, 298, 346, 495, 538 |
| TaaI | ACNGT | 4 cut(s) | 581, 647, 706, 767 |
| TaiI | ACGT | 1 cut(s) | 255 |
| TaqI | TCGA | 3 cut(s) | 19, 226, 531 |
| TasI | AATT | 5 cut(s) | 135, 176, 416, 425, 733 |
| TfiI | GAWTC | 1 cut(s) | 412 |
| Tru1I | TTAA | 1 cut(s) | 273 |
| Tru9I | TTAA | 1 cut(s) | 273 |
| TscAI | CASTG | 1 cut(s) | 790 |
| TseFI | GTSAC | 1 cut(s) | 568 |
| Tsp45I | GTSAC | 1 cut(s) | 568 |
| TspRI | CASTG | 1 cut(s) | 790 |
| VpaK11BI | GGWCC | 1 cut(s) | 356 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 351 |
| XapI | RAATTY | 2 cut(s) | 135, 733 |
| XhoI | CTCGAG | 1 cut(s) | 225 |
| XmiI | GTMKAC | 1 cut(s) | 19 |
| XspI | CTAG | 6 cut(s) | 434, 584, 621, 680, 741, 756 |