transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVP_2 | PF08284 | 2 - 40 | 4.6e-12 | Retroviral aspartyl protease |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 374 |
| AcuI | CTGAAG | 1 cut(s) | 399 |
| AfaI | GTAC | 2 cut(s) | 279, 376 |
| AjiI | CACGTC | 1 cut(s) | 346 |
| AjnI | CCWGG | 2 cut(s) | 322, 370 |
| AluBI | AGCT | 2 cut(s) | 8, 410 |
| AluI | AGCT | 2 cut(s) | 8, 410 |
| Alw26I | GTCTC | 2 cut(s) | 160, 336 |
| AlwI | GGATC | 1 cut(s) | 374 |
| AsuHPI | GGTGA | 1 cut(s) | 161 |
| AxyI | CCTNAGG | 1 cut(s) | 132 |
| BaeGI | GKGCMC | 1 cut(s) | 56 |
| BbsI | GAAGAC | 1 cut(s) | 107 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 56, 90 |
| BciT130I | CCWGG | 2 cut(s) | 324, 372 |
| BcoDI | GTCTC | 2 cut(s) | 160, 336 |
| Bme1390I | CCNGG | 2 cut(s) | 324, 372 |
| BmgBI | CACGTC | 1 cut(s) | 346 |
| BmrFI | CCNGG | 2 cut(s) | 324, 372 |
| BpiI | GAAGAC | 1 cut(s) | 107 |
| Bse21I | CCTNAGG | 1 cut(s) | 132 |
| BseBI | CCWGG | 2 cut(s) | 324, 372 |
| BseGI | GGATG | 2 cut(s) | 15, 280 |
| BseMII | CTCAG | 1 cut(s) | 123 |
| BseSI | GKGCMC | 1 cut(s) | 56 |
| BsmAI | GTCTC | 2 cut(s) | 160, 336 |
| BsmBI | CGTCTC | 1 cut(s) | 336 |
| Bsp1286I | GDGCHC | 1 cut(s) | 56 |
| Bsp143I | GATC | 1 cut(s) | 379 |
| BspCNI | CTCAG | 1 cut(s) | 124 |
| BspPI | GGATC | 1 cut(s) | 374 |
| BssMI | GATC | 1 cut(s) | 379 |
| Bst2UI | CCWGG | 2 cut(s) | 324, 372 |
| Bst4CI | ACNGT | 2 cut(s) | 106, 266 |
| BstC8I | GCNNGC | 1 cut(s) | 6 |
| BstDEI | CTNAG | 1 cut(s) | 132 |
| BstF5I | GGATG | 2 cut(s) | 15, 280 |
| BstKTI | GATC | 1 cut(s) | 382 |
| BstMAI | GTCTC | 2 cut(s) | 160, 336 |
| BstMBI | GATC | 1 cut(s) | 379 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 191, 416 |
| BstNI | CCWGG | 2 cut(s) | 324, 372 |
| BstSCI | CCNGG | 2 cut(s) | 322, 370 |
| BstSLI | GKGCMC | 1 cut(s) | 56 |
| BstV2I | GAAGAC | 1 cut(s) | 107 |
| BstX2I | RGATCY | 1 cut(s) | 379 |
| BstYI | RGATCY | 1 cut(s) | 379 |
| Bsu36I | CCTNAGG | 1 cut(s) | 132 |
| BtrI | CACGTC | 1 cut(s) | 346 |
| BtsCI | GGATG | 2 cut(s) | 15, 280 |
| BtsIMutI | CAGTG | 1 cut(s) | 271 |
| Cac8I | GCNNGC | 1 cut(s) | 6 |
| Csp6I | GTAC | 2 cut(s) | 278, 375 |
| CviAII | CATG | 1 cut(s) | 170 |
| CviJI | RGCY | 5 cut(s) | 8, 194, 233, 410, 419 |
| CviKI_1 | RGCY | 5 cut(s) | 8, 194, 233, 410, 419 |
| CviQI | GTAC | 2 cut(s) | 278, 375 |
| DdeI | CTNAG | 1 cut(s) | 132 |
| DpnI | GATC | 1 cut(s) | 381 |
| DpnII | GATC | 1 cut(s) | 379 |
| Eco57I | CTGAAG | 1 cut(s) | 399 |
| Eco81I | CCTNAGG | 1 cut(s) | 132 |
| EcoRII | CCWGG | 2 cut(s) | 322, 370 |
| Esp3I | CGTCTC | 1 cut(s) | 336 |
| FaeI | CATG | 1 cut(s) | 173 |
| FaiI | YATR | 6 cut(s) | 86, 96, 171, 188, 237, 386 |
| FatI | CATG | 1 cut(s) | 169 |
| FokI | GGATG | 2 cut(s) | 2, 287 |
| Hin1II | CATG | 1 cut(s) | 173 |
| HincII | GTYRAC | 1 cut(s) | 207 |
| HindII | GTYRAC | 1 cut(s) | 207 |
| HpaI | GTTAAC | 1 cut(s) | 207 |
| HphI | GGTGA | 1 cut(s) | 161 |
| Hpy166II | GTNNAC | 2 cut(s) | 207, 354 |
| Hpy188III | TCNNGA | 1 cut(s) | 298 |
| Hpy8I | GTNNAC | 2 cut(s) | 207, 354 |
| HpyAV | CCTTC | 2 cut(s) | 265, 423 |
| HpyCH4III | ACNGT | 2 cut(s) | 106, 266 |
| HpyCH4IV | ACGT | 2 cut(s) | 140, 345 |
| HpyCH4V | TGCA | 1 cut(s) | 67 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 191, 416 |
| HpyF3I | CTNAG | 1 cut(s) | 132 |
| HpySE526I | ACGT | 2 cut(s) | 140, 345 |
| Hsp92II | CATG | 1 cut(s) | 173 |
| KspAI | GTTAAC | 1 cut(s) | 207 |
| Kzo9I | GATC | 1 cut(s) | 379 |
| LmnI | GCTCC | 1 cut(s) | 415 |
| LpnPI | CCDG | 8 cut(s) | 18, 144, 309, 311, 323, 336, 357, 384 |
| MaeII | ACGT | 2 cut(s) | 140, 345 |
| MaeIII | GTNAC | 3 cut(s) | 106, 136, 391 |
| MalI | GATC | 1 cut(s) | 381 |
| MboI | GATC | 1 cut(s) | 379 |
| MboII | GAAGA | 1 cut(s) | 112 |
| MflI | RGATCY | 1 cut(s) | 379 |
| MhlI | GDGCHC | 1 cut(s) | 56 |
| MnlI | CCTC | 3 cut(s) | 23, 127, 183 |
| MseI | TTAA | 1 cut(s) | 206 |
| MspA1I | CMGCKG | 1 cut(s) | 8 |
| MspR9I | CCNGG | 2 cut(s) | 324, 372 |
| MvaI | CCWGG | 2 cut(s) | 324, 372 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 191, 416 |
| NdeII | GATC | 1 cut(s) | 379 |
| NlaIII | CATG | 1 cut(s) | 173 |
| NmuCI | GTSAC | 1 cut(s) | 106 |
| Psp6I | CCWGG | 2 cut(s) | 322, 370 |
| PspGI | CCWGG | 2 cut(s) | 322, 370 |
| PsuI | RGATCY | 1 cut(s) | 379 |
| PvuII | CAGCTG | 1 cut(s) | 8 |
| RsaI | GTAC | 2 cut(s) | 279, 376 |
| RsaNI | GTAC | 2 cut(s) | 278, 375 |
| SaqAI | TTAA | 1 cut(s) | 206 |
| Sau3AI | GATC | 1 cut(s) | 379 |
| ScrFI | CCNGG | 2 cut(s) | 324, 372 |
| SduI | GDGCHC | 1 cut(s) | 56 |
| StyD4I | CCNGG | 2 cut(s) | 322, 370 |
| TaaI | ACNGT | 2 cut(s) | 106, 266 |
| TaiI | ACGT | 2 cut(s) | 143, 348 |
| Tru1I | TTAA | 1 cut(s) | 206 |
| Tru9I | TTAA | 1 cut(s) | 206 |
| TscAI | CASTG | 1 cut(s) | 271 |
| TseFI | GTSAC | 1 cut(s) | 106 |
| Tsp45I | GTSAC | 1 cut(s) | 106 |
| TspDTI | ATGAA | 1 cut(s) | 104 |
| TspRI | CASTG | 1 cut(s) | 271 |