FvH4_6g30091

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000094
Physical Location & Seq
Forward (+)
23239733 .. 23243611
3879 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g30091.t1

Sequence Viewer

Length: 3264 bp
ATGCCTCCTAGGCGCCCACGGCAACCCCGTGTGGCTACTTCGACCAATGCCGATGAGGGCAATGAGGTCAGGGGACTGGTTGATGATATTGGAAATATGCTGAGGGATGTTATAGATCGAGCTCCACACCCTCATGCAGTGAAGAGGAGAGAAGTTTATGAGGCTGGAGCAAGAGAGTTCAAGGGTGCCAAGGGACCCCTTGATGCTTATACTTGGGTGGACAAAATGGAAAAGGCTTTTGCGAGCACAGATTTGCCAGAAGAAAGGAAGGTGAAGATGGCAGTGACTTTCCTGGATGATTCAGCACATCATTGGTGGTCGCTCGCTAGCAGGAATGTTGAGGATGCTCTGAATATGTCGTGGGAGCAGTTTAAGACGCTTTTCTTGGGGCAGTATTTCAGTCCTGCCCACCGCAGCAGAATTCAGTCAGATTTCCTGAATATGAAGAAGAGGGATGATGAGGGTGTTATAGAGTTCCAAGAGAGATTCACTTCCCTGAGCTACCATGTGTCATATCTGGTTCCTGATGAGAGGACCAGGATGGAGATGTTCATTGGGGCACTTGGTGGAGTGTTTGCAGATAAGATGACGGGTGTTTATTACCCGACTTTCCCTGATGCTGTTCATGCAGCCATGGCCATTGAGTCTATGGGGATTTATAGTGCTCGGCCACGAGATTTCGGTGGCCCCAGTCAGGGTCCATCCAAGAAAGCTGCTTCATCATCCGCTTCTAGGTCTTCTGCTGGTAGTGGCAGTAGTGGTAGATCTAGCTCTGGTGTTCGAAGCAAGTCTAAGGGACGTTTCAGAAGTTCTTCTCGGAGTCATTTGGGTAGGCAGCAGTCTGGGCAGTATGGTTTTGGTGGTAGTTTCCATGGTGGGTCATCCGGTAGCCAGACTTTTTCTTATGGGCAGCAGCAGTTTTCTGGGTGCTTTGAGTGTGGTGGTCAAGACCACTTCAGGACAGATTGCCCATTGTTGGCTCAGAGGACCACCACCACCCCTACTCAGCCAGTTGGTCAGTCTTCAGCTAGGGGCTCTAGTAGTGGTGCCCAAGGCAGTGCTTCAGTTAGAGGTGGCTCTCAGAGAGGTGGTGGTCAGCGTGGACGTCCCATGACTCGCGCTAGACTGCATGCTATGACCCAGCAGGAGGGTCGTACTTCTCCAAATGTCATCATTGGTACGTTAATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTAGATTTTCCCTCCATGCCAATGTGTCATCATCGTCTCTTCTAGGCGAGTGGCATGTGTCTCTACCCTTCGGTGAGGCATTTTTAGCTCATGTGGTGGATACAAGTATGGGAGTTGTGGGATTAGAAGATATTCCAATAGTAAGGGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGAGATAGACTTCTCTATAGAATTACTTCCTGGAACTATGCCTATTTCTCAGGCACCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAATTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCCAGTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGAAAGTTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCTAAGATTGATTTGAGATCGGAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACAGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCAATGCTTTGTGAAAGATTTTTCAAAGATTGCTGCTCCTCTCATAAGATTGACCAGGAAGGGGGTTAAGTTTGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTATTTTGGCACTTCCGGAAGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGTATGAGGGGAATTATCCTACTCATGATCTAGAGCTTGCAGCGGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAAAGAGAGCTTAATATGAGACAGAGAAGATGGATGGAGTTAATCAATGATTACGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTATCAGTAGATGAGGTTGGTGCTTTAATAGCCAGTTTTCATGTGAGGCCAGTTTTGATTGATAGAGTGCGAGAAGCGCAGTATAATGATCCTTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGGGACTCTATTGTTTAACAACCGACTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGGTCATAGCTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTCTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGGTTTGTCAGCAAGTAAAAGCTGAAAGGCAGAAGCCTTCTGGATTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGTTTACCTCGTACCCGTGAAGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTGGATAGATTGGCGAAGCTTTATGTGAATGAAATTGTGAGGCTTCATGGTGTTCCTGAATCAATAGTGTCAGATCGGGATCCTCGATTTGCTTCTAAATTCTGGGGAGCTCTACAAGTAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGATTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGTTCAGAGGGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

1088

Amino Acids

121.77

Weight (kDa)

9.17

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 92 - 187 9.8e-15 Retrotransposon gag protein
RVP_2 PF08284 371 - 448 3.7e-10 Retroviral aspartyl protease
RT_RNaseH_2 PF17919 649 - 743 3e-31 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 677 - 773 3.9e-32 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 888 - 945 4.7e-19 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1108
Acc36I ACCTGC 1 cut(s) 1850
Acc65I GGTACC 1 cut(s) 3146
AccB1I GGYRCC 7 cut(s) 12, 185, 1046, 1495, 1628, 1730, 3146
AccB7I CCANNNNNTGG 1 cut(s) 1792
AccII CGCG 1 cut(s) 1119
AccIII TCCGGA 2 cut(s) 1399, 2017
AciI CCGC 6 cut(s) 412, 726, 1517, 2171, 2423, 2589
AclWI GGATC 7 cut(s) 1211, 1709, 1775, 1788, 2540, 3092, 3105
AcoI YGGCCR 3 cut(s) 636, 668, 2768
AcsI RAATTY 2 cut(s) 420, 3116
AcuI CTGAAG 5 cut(s) 940, 1008, 1047, 2771, 3145
AcyI GRCGYC 2 cut(s) 13, 1105
AdeI CACNNNGTG 1 cut(s) 566
AfaI GTAC 4 cut(s) 1156, 1180, 2932, 3148
AfiI CCNNNNNNNGG 9 cut(s) 694, 695, 732, 976, 1147, 1792, 1929, 2135, 2940
AjiI CACGTC 1 cut(s) 2063
AjnI CCWGG 6 cut(s) 291, 536, 1423, 1471, 1922, 2341
AjuI GAANNNNNNNTTGG 2 cut(s) 3002, 3034
AleI CACNNNNGTG 1 cut(s) 1826
Alw21I GWGCWC 6 cut(s) 124, 248, 667, 1600, 2002, 3130
Alw26I GTCTC 6 cut(s) 1287, 1311, 1590, 1630, 2191, 2278
AlwI GGATC 7 cut(s) 1211, 1709, 1775, 1788, 2540, 3092, 3105
Aor13HI TCCGGA 2 cut(s) 1399, 2017
AoxI GGCC 6 cut(s) 636, 668, 685, 1574, 2504, 2768
ApoI RAATTY 2 cut(s) 420, 3116
Asp700I GAANNNNTTC 3 cut(s) 811, 1377, 1467
Asp718I GGTACC 1 cut(s) 3146
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 3 cut(s) 15, 1121, 2536
AspS9I GGNCC 6 cut(s) 194, 534, 686, 698, 987, 2893
AsuC2I CCSGG 2 cut(s) 1221, 2724
AsuHPI GGTGA 5 cut(s) 283, 1331, 2893, 2968, 2971
AsuII TTCGAA 2 cut(s) 781, 2579
AsuNHI GCTAGC 1 cut(s) 326
AvaII GGWCC 5 cut(s) 194, 534, 698, 987, 2893
AvrII CCTAGG 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 1413
BaeGI GKGCMC 2 cut(s) 562, 1051
BalI TGGCCA 2 cut(s) 638, 2770
BamHI GGATCC 2 cut(s) 1780, 3097
BanI GGYRCC 7 cut(s) 12, 185, 1046, 1495, 1628, 1730, 3146
BanII GRGCYC 3 cut(s) 124, 1037, 3130
BauI CACGAG 1 cut(s) 672
BbsI GAAGAC 5 cut(s) 729, 1014, 1541, 1822, 2240
Bbv12I GWGCWC 6 cut(s) 124, 248, 667, 1600, 2002, 3130
BbvCI CCTCAGC 1 cut(s) 101
BceAI ACGGC 3 cut(s) 35, 2113, 2851
BcgI CGANNNNNNTGC 4 cut(s) 1133, 1167, 2075, 2109
BciT130I CCWGG 6 cut(s) 293, 538, 1425, 1473, 1924, 2343
BciVI GTATCC 1 cut(s) 1339
BclI TGATCA 1 cut(s) 1717
BcnI CCSGG 2 cut(s) 1221, 2724
BcoDI GTCTC 6 cut(s) 1287, 1311, 1590, 1630, 2191, 2278
BfmI CTRYAG 2 cut(s) 1458, 2445
BfoI RGCGCY 1 cut(s) 16
BfuAI ACCTGC 1 cut(s) 1850
BfuI GTATCC 1 cut(s) 1339
BglI GCCNNNNNGGC 1 cut(s) 10
BglII AGATCT 1 cut(s) 764
BlnI CCTAGG 1 cut(s) 8
Bme1390I CCNGG 8 cut(s) 293, 538, 1221, 1425, 1473, 1924, 2343, 2724
Bme18I GGWCC 5 cut(s) 194, 534, 698, 987, 2893
BmgBI CACGTC 1 cut(s) 2063
BmgT120I GGNCC 6 cut(s) 194, 534, 686, 698, 987, 2893
BmrFI CCNGG 8 cut(s) 293, 538, 1221, 1425, 1473, 1924, 2343, 2724
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 6 cut(s) 193, 334, 607, 2041, 2073, 2356
BmtI GCTAGC 1 cut(s) 330
BmuI ACTGGG 1 cut(s) 684
BpiI GAAGAC 5 cut(s) 729, 1014, 1541, 1822, 2240
BpmI CTGGAG 3 cut(s) 186, 1497, 1584
Bpu10I CCTNAGC 2 cut(s) 101, 497
Bpu14I TTCGAA 2 cut(s) 781, 2579
BpuEI CTTGAG 2 cut(s) 2171, 2882
BpuMI CCSGG 2 cut(s) 1221, 2724
Bsa29I ATCGAT 1 cut(s) 1704
BsaBI GATNNNNATC 1 cut(s) 3096
BsaHI GRCGYC 2 cut(s) 13, 1105
BsaJI CCNNGG 9 cut(s) 8, 17, 189, 633, 871, 1051, 1589, 1697, 2904
BsaWI WCCGGW 3 cut(s) 884, 1399, 2017
BsaXI ACNNNNNCTCC 8 cut(s) 1761, 1791, 1984, 2014, 2022, 2052, 3212, 3242
Bsc4I CCNNNNNNNGG 9 cut(s) 694, 695, 732, 976, 1147, 1792, 1929, 2135, 2940
Bse1I ACTGG 8 cut(s) 81, 690, 1010, 1601, 2490, 2507, 2879, 2999
Bse21I CCTNAGG 1 cut(s) 1413
Bse3DI GCAATG 1 cut(s) 67
Bse8I GATNNNNATC 1 cut(s) 3096
BseAI TCCGGA 2 cut(s) 1399, 2017
BseBI CCWGG 6 cut(s) 293, 538, 1425, 1473, 1924, 2343
BseCI ATCGAT 1 cut(s) 1704
BseDI CCNNGG 9 cut(s) 8, 17, 189, 633, 871, 1051, 1589, 1697, 2904
BseJI GATNNNNATC 1 cut(s) 3096
BseLI CCNNNNNNNGG 9 cut(s) 694, 695, 732, 976, 1147, 1792, 1929, 2135, 2940
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 8 cut(s) 92, 488, 995, 1019, 1094, 1404, 1505, 3194
BseNI ACTGG 8 cut(s) 81, 690, 1010, 1601, 2490, 2507, 2879, 2999
BseRI GAGGAG 3 cut(s) 160, 1430, 1896
BseSI GKGCMC 2 cut(s) 562, 1051
BseYI CCCAGC 1 cut(s) 1140
BsgI GTGCAG 1 cut(s) 2970
Bsh1236I CGCG 1 cut(s) 1119
BshFI GGCC 6 cut(s) 638, 670, 687, 1576, 2506, 2770
BshNI GGYRCC 7 cut(s) 12, 185, 1046, 1495, 1628, 1730, 3146
BshVI ATCGAT 1 cut(s) 1704
BsiHKAI GWGCWC 6 cut(s) 124, 248, 667, 1600, 2002, 3130
BsiSI CCGG 5 cut(s) 885, 1221, 1400, 2018, 2723
BslFI GGGAC 6 cut(s) 87, 207, 810, 1092, 2635, 2906
BslI CCNNNNNNNGG 9 cut(s) 694, 695, 732, 976, 1147, 1792, 1929, 2135, 2940
BsmAI GTCTC 6 cut(s) 1287, 1311, 1590, 1630, 2191, 2278
BsmBI CGTCTC 1 cut(s) 1287
BsmFI GGGAC 6 cut(s) 87, 207, 810, 1092, 2635, 2906
BsmI GAATGC 1 cut(s) 1231
BsnI GGCC 6 cut(s) 638, 670, 687, 1576, 2506, 2770
Bsp119I TTCGAA 2 cut(s) 781, 2579
Bsp1286I GDGCHC 9 cut(s) 124, 248, 562, 667, 1037, 1051, 1600, 2002, 3130
Bsp13I TCCGGA 2 cut(s) 1399, 2017
Bsp19I CCATGG 4 cut(s) 633, 871, 1589, 2904
BspACI CCGC 6 cut(s) 412, 726, 1517, 2171, 2423, 2589
BspANI GGCC 6 cut(s) 638, 670, 687, 1576, 2506, 2770
BspCNI CTCAG 8 cut(s) 93, 489, 994, 1018, 1093, 1405, 1504, 3193
BspDI ATCGAT 1 cut(s) 1704
BspEI TCCGGA 2 cut(s) 1399, 2017
BspFNI CGCG 1 cut(s) 1119
BspHI TCATGA 1 cut(s) 2152
BspMI ACCTGC 1 cut(s) 1850
BspOI GCTAGC 1 cut(s) 330
BspPI GGATC 7 cut(s) 1211, 1709, 1775, 1788, 2540, 3092, 3105
BspT104I TTCGAA 2 cut(s) 781, 2579
BspT107I GGYRCC 7 cut(s) 12, 185, 1046, 1495, 1628, 1730, 3146
BsrDI GCAATG 1 cut(s) 67
BsrI ACTGG 8 cut(s) 81, 690, 1010, 1601, 2490, 2507, 2879, 2999
BssECI CCNNGG 9 cut(s) 8, 17, 189, 633, 871, 1051, 1589, 1697, 2904
BssNI GRCGYC 2 cut(s) 13, 1105
BssSI CACGAG 1 cut(s) 672
BssT1I CCWWGG 7 cut(s) 8, 189, 633, 871, 1051, 1589, 2904
Bst2BI CACGAG 1 cut(s) 672
Bst2UI CCWGG 6 cut(s) 293, 538, 1425, 1473, 1924, 2343
Bst4CI ACNGT 3 cut(s) 1675, 1828, 2951
Bst6I CTCTTC 8 cut(s) 137, 443, 1290, 2608, 2661, 2669, 2774, 3164
BstACI GRCGYC 2 cut(s) 13, 1105
BstAPI GCANNNNNTGC 1 cut(s) 2714
BstBI TTCGAA 2 cut(s) 781, 2579
BstC8I GCNNGC 8 cut(s) 244, 324, 328, 1131, 1200, 1961, 2166, 2442
BstDSI CCRYGG 5 cut(s) 17, 633, 871, 1589, 2904
BstFNI CGCG 1 cut(s) 1119
BstH2I RGCGCY 1 cut(s) 16
BstHHI GCGC 3 cut(s) 15, 1121, 2536
BstMAI GTCTC 6 cut(s) 1287, 1311, 1590, 1630, 2191, 2278
BstNI CCWGG 6 cut(s) 293, 538, 1425, 1473, 1924, 2343
BstNSI RCATGY 3 cut(s) 1133, 1304, 1585
BstSCI CCNGG 8 cut(s) 291, 536, 1219, 1423, 1471, 1922, 2341, 2722
BstSFI CTRYAG 2 cut(s) 1458, 2445
BstSLI GKGCMC 2 cut(s) 562, 1051
BstUI CGCG 1 cut(s) 1119
BstV2I GAAGAC 5 cut(s) 729, 1014, 1541, 1822, 2240
BstX2I RGATCY 3 cut(s) 764, 1780, 3097
BstYI RGATCY 3 cut(s) 764, 1780, 3097
Bsu15I ATCGAT 1 cut(s) 1704
Bsu36I CCTNAGG 1 cut(s) 1413
BsuI GTATCC 1 cut(s) 1339
BsuRI GGCC 6 cut(s) 638, 670, 687, 1576, 2506, 2770
BsuTUI ATCGAT 1 cut(s) 1704
BtgI CCRYGG 5 cut(s) 17, 633, 871, 1589, 2904
BtrI CACGTC 1 cut(s) 2063
BtsI GCAGTG 5 cut(s) 144, 288, 1063, 1806, 3165
BveI ACCTGC 1 cut(s) 1850
Cac8I GCNNGC 8 cut(s) 244, 324, 328, 1131, 1200, 1961, 2166, 2442
CciI TCATGA 1 cut(s) 2152
CfoI GCGC 3 cut(s) 15, 1121, 2536
Cfr13I GGNCC 6 cut(s) 194, 534, 686, 698, 987, 2893
ClaI ATCGAT 1 cut(s) 1704
CseI GACGC 1 cut(s) 385
Csp6I GTAC 4 cut(s) 1155, 1179, 2931, 3147
CviQI GTAC 4 cut(s) 1155, 1179, 2931, 3147
DinI GGCGCC 1 cut(s) 14
DraIII CACNNNGTG 1 cut(s) 566
EaeI YGGCCR 3 cut(s) 636, 668, 2768
Eam1104I CTCTTC 8 cut(s) 137, 443, 1290, 2608, 2661, 2669, 2774, 3164
EarI CTCTTC 8 cut(s) 137, 443, 1290, 2608, 2661, 2669, 2774, 3164
Ecl136II GAGCTC 2 cut(s) 122, 3128
Eco130I CCWWGG 7 cut(s) 8, 189, 633, 871, 1051, 1589, 2904
Eco24I GRGCYC 3 cut(s) 124, 1037, 3130
Eco47I GGWCC 5 cut(s) 194, 534, 698, 987, 2893
Eco53kI GAGCTC 2 cut(s) 122, 3128
Eco57I CTGAAG 5 cut(s) 940, 1008, 1047, 2771, 3145
Eco81I CCTNAGG 1 cut(s) 1413
EcoICRI GAGCTC 2 cut(s) 122, 3128
EcoO109I RGGNCCY 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 6 cut(s) 291, 536, 1423, 1471, 1922, 2341
EcoT14I CCWWGG 7 cut(s) 8, 189, 633, 871, 1051, 1589, 2904
EcoT22I ATGCAT 1 cut(s) 1646
EcoT38I GRGCYC 3 cut(s) 124, 1037, 3130
EgeI GGCGCC 1 cut(s) 14
EheI GGCGCC 1 cut(s) 14
ErhI CCWWGG 7 cut(s) 8, 189, 633, 871, 1051, 1589, 2904
Esp3I CGTCTC 1 cut(s) 1287
FalI AAGNNNNNCTT 2 cut(s) 1973, 2005
FaqI GGGAC 6 cut(s) 87, 207, 810, 1092, 2635, 2906
FauNDI CATATG 1 cut(s) 2710
FbaI TGATCA 1 cut(s) 1717
FriOI GRGCYC 3 cut(s) 124, 1037, 3130
GlaI GCGC 3 cut(s) 14, 1120, 2535
GsaI CCCAGC 1 cut(s) 1144
GsuI CTGGAG 3 cut(s) 186, 1497, 1584
HaeII RGCGCY 1 cut(s) 16
HaeIII GGCC 6 cut(s) 638, 670, 687, 1576, 2506, 2770
HapII CCGG 5 cut(s) 885, 1221, 1400, 2018, 2723
HgaI GACGC 1 cut(s) 385
HhaI GCGC 3 cut(s) 15, 1121, 2536
Hin1I GRCGYC 2 cut(s) 13, 1105
Hin6I GCGC 3 cut(s) 13, 1119, 2534
HinP1I GCGC 3 cut(s) 13, 1119, 2534
HindIII AAGCTT 1 cut(s) 3035
HpaII CCGG 5 cut(s) 885, 1221, 1400, 2018, 2723
HphI GGTGA 5 cut(s) 283, 1331, 2893, 2968, 2971
Hpy166II GTNNAC 4 cut(s) 220, 1103, 2262, 2924
Hpy8I GTNNAC 4 cut(s) 220, 1103, 2262, 2924
HpyAV CCTTC 9 cut(s) 262, 1324, 1760, 1921, 2559, 2687, 2746, 2859, 2933
HpyCH4III ACNGT 3 cut(s) 1675, 1828, 2951
HpyCH4IV ACGT 4 cut(s) 799, 1105, 1181, 2062
HpySE526I ACGT 4 cut(s) 799, 1105, 1181, 2062
Hsp92I GRCGYC 2 cut(s) 13, 1105
HspAI GCGC 3 cut(s) 13, 1119, 2534
KasI GGCGCC 1 cut(s) 12
KflI GGGWCCC 1 cut(s) 194
Kpn2I TCCGGA 2 cut(s) 1399, 2017
KpnI GGTACC 1 cut(s) 3150
Ksp22I TGATCA 1 cut(s) 1717
LweI GCATC 6 cut(s) 193, 334, 607, 2041, 2073, 2356
MaeII ACGT 4 cut(s) 799, 1105, 1181, 2062
MaeIII GTNAC 3 cut(s) 283, 1669, 1828
MfeI CAATTG 2 cut(s) 1541, 2120
MflI RGATCY 3 cut(s) 764, 1780, 3097
MhlI GDGCHC 9 cut(s) 124, 248, 562, 667, 1037, 1051, 1600, 2002, 3130
MlsI TGGCCA 2 cut(s) 638, 2770
MluNI TGGCCA 2 cut(s) 638, 2770
Mly113I GGCGCC 1 cut(s) 13
MlyI GAGTC 7 cut(s) 653, 829, 1108, 1531, 2254, 2617, 2967
Mox20I TGGCCA 2 cut(s) 638, 2770
Mph1103I ATGCAT 1 cut(s) 1646
MroI TCCGGA 2 cut(s) 1399, 2017
MroXI GAANNNNTTC 3 cut(s) 811, 1377, 1467
MscI TGGCCA 2 cut(s) 638, 2770
MslI CAYNNNNRTG 5 cut(s) 132, 1266, 1826, 2735, 2903
Msp20I TGGCCA 2 cut(s) 638, 2770
MspA1I CMGCKG 2 cut(s) 1517, 2171
MspI CCGG 5 cut(s) 885, 1221, 1400, 2018, 2723
MspR9I CCNGG 8 cut(s) 293, 538, 1221, 1425, 1473, 1924, 2343, 2724
MunI CAATTG 2 cut(s) 1541, 2120
Mva1269I GAATGC 1 cut(s) 1231
MvaI CCWGG 6 cut(s) 293, 538, 1425, 1473, 1924, 2343
MvnI CGCG 1 cut(s) 1119
NarI GGCGCC 1 cut(s) 13
NciI CCSGG 2 cut(s) 1221, 2724
NcoI CCATGG 4 cut(s) 633, 871, 1589, 2904
NdeI CATATG 1 cut(s) 2710
NheI GCTAGC 1 cut(s) 326
NmeAIII GCCGAG 1 cut(s) 646
NmuCI GTSAC 3 cut(s) 283, 1669, 1828
NsiI ATGCAT 1 cut(s) 1646
NspI RCATGY 3 cut(s) 1133, 1304, 1585
NspV TTCGAA 2 cut(s) 781, 2579
OliI CACNNNNGTG 1 cut(s) 1826
PaeI GCATGC 1 cut(s) 1133
PagI TCATGA 1 cut(s) 2152
PcsI WCGNNNNNNNCGW 2 cut(s) 25, 3100
PctI GAATGC 1 cut(s) 1231
PdmI GAANNNNTTC 3 cut(s) 811, 1377, 1467
PfeI GAWTC 6 cut(s) 299, 486, 1663, 1837, 2746, 3077
PflFI GACNNNGTC 1 cut(s) 2064
PflMI CCANNNNNTGG 1 cut(s) 1792
PfoI TCCNGGA 4 cut(s) 291, 1219, 1471, 2341
PleI GAGTC 7 cut(s) 652, 828, 1108, 1531, 2253, 2617, 2967
PluTI GGCGCC 1 cut(s) 16
PpsI GAGTC 7 cut(s) 652, 828, 1108, 1531, 2253, 2617, 2967
PpuMI RGGWCCY 1 cut(s) 194
Psp124BI GAGCTC 2 cut(s) 124, 3130
Psp5II RGGWCCY 1 cut(s) 194
Psp6I CCWGG 6 cut(s) 291, 536, 1423, 1471, 1922, 2341
PspFI CCCAGC 1 cut(s) 1140
PspGI CCWGG 6 cut(s) 291, 536, 1423, 1471, 1922, 2341
PspPI GGNCC 6 cut(s) 194, 534, 686, 698, 987, 2893
PspPPI RGGWCCY 1 cut(s) 194
PsuI RGATCY 3 cut(s) 764, 1780, 3097
PsyI GACNNNGTC 1 cut(s) 2064
RsaI GTAC 4 cut(s) 1156, 1180, 2932, 3148
RsaNI GTAC 4 cut(s) 1155, 1179, 2931, 3147
RseI CAYNNNNRTG 5 cut(s) 132, 1266, 1826, 2735, 2903
SacI GAGCTC 2 cut(s) 124, 3130
Sau96I GGNCC 6 cut(s) 194, 534, 686, 698, 987, 2893
SchI GAGTC 7 cut(s) 653, 829, 1108, 1531, 2254, 2617, 2967
ScrFI CCNGG 8 cut(s) 293, 538, 1221, 1425, 1473, 1924, 2343, 2724
SduI GDGCHC 9 cut(s) 124, 248, 562, 667, 1037, 1051, 1600, 2002, 3130
SfaNI GCATC 6 cut(s) 193, 334, 607, 2041, 2073, 2356
SfcI CTRYAG 2 cut(s) 1458, 2445
SfoI GGCGCC 1 cut(s) 14
SfuI TTCGAA 2 cut(s) 781, 2579
SinI GGWCC 5 cut(s) 194, 534, 698, 987, 2893
SmiMI CAYNNNNRTG 5 cut(s) 132, 1266, 1826, 2735, 2903
SmlI CTYRAG 2 cut(s) 2186, 2861
SmoI CTYRAG 2 cut(s) 2186, 2861
SphI GCATGC 1 cut(s) 1133
SsiI CCGC 6 cut(s) 412, 726, 1517, 2171, 2423, 2589
SspDI GGCGCC 1 cut(s) 12
SstI GAGCTC 2 cut(s) 124, 3130
StyD4I CCNGG 8 cut(s) 291, 536, 1219, 1423, 1471, 1922, 2341, 2722
StyI CCWWGG 7 cut(s) 8, 189, 633, 871, 1051, 1589, 2904
TaaI ACNGT 3 cut(s) 1675, 1828, 2951
TaiI ACGT 4 cut(s) 802, 1108, 1184, 2065
TauI GCSGC 1 cut(s) 2591
TfiI GAWTC 6 cut(s) 299, 486, 1663, 1837, 2746, 3077
TseFI GTSAC 3 cut(s) 283, 1669, 1828
Tsp45I GTSAC 3 cut(s) 283, 1669, 1828
TspGWI ACGGA 1 cut(s) 1680
Tth111I GACNNNGTC 1 cut(s) 2064
Van91I CCANNNNNTGG 1 cut(s) 1792
VpaK11BI GGWCC 5 cut(s) 194, 534, 698, 987, 2893
XapI RAATTY 2 cut(s) 420, 3116
XbaI TCTAGA 2 cut(s) 2057, 2158
XceI RCATGY 3 cut(s) 1133, 1304, 1585
XcmI CCANNNNNNNNNTGG 2 cut(s) 646, 2886
XmaJI CCTAGG 1 cut(s) 8
XmnI GAANNNNTTC 3 cut(s) 811, 1377, 1467
ZraI GACGTC 1 cut(s) 1106
Zsp2I ATGCAT 1 cut(s) 1646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.