Rw4G011970

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000094
Physical Location & Seq
Forward (+)
28186025 .. 28188492
2468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G011970.1

Sequence Viewer

Length: 2385 bp
ATGCCTCCTAGATGCCGGACTCGTGAGGAAACCCCTCCCATTCCAGGAGATGAGCATACTCCTGGAGGAATAGCGGAAGCGTTGGGACGTATTGTGCAGCAGTTGACTGCAGCGCTTCCAGGCTCCAGAACTGACTTTACCATGGAGCGAGCGAAGAGGCATGGAGCTTATAGCTTCTCTCATGCTCCTGAGGCTATGGATGCCCAGAATTGGTTGAATAAAATGGAGAGAGTCTTCACTCAAATCCATTGCCCAGAGGATCGAAAAGTGAGTTTAGCGGTGGATTTTCTGGATGGTGTGGCTTATGATTGGTGGTCCTATATGAGCAGGGATTTGGAGATCGATGGCCCAATCACTTGGGAACAGTTCAAAGAGCACTTTAGTGAGAGATATTTTGGCACAGCCATTCGGGATAGGATGAAGTATGAGTTCATGCATCTACAGAAAGGGGACATGACCGTAACAGAGTTTGAGCAGCGGTTCACCCAGCTAGCCCAGTTTGTGCCTGATATGGTTAGCACTGAGAGGGAGCGGATTTATAGGTTTGTTGATGCTTTGCCTGCATTTACTCCTTATCAGACAGCGGGTCAGTCTTCTGCCGGTACGTCTACTAGTGGTACCGTGGCTTCTACTAGCGGTACCCATCATAGTTCAGCAGCTCGTGGCAGCCAGCAGCGGGGTAGGGGTCAGAGAGGACGTCCTACCACTCAGGCTCGGTTGCATGCCATGACACAGCAGGAGGGCCATGACTCGCCAGATGTTATCATTGGTACGTTGTCTGTTTTTGGTCAGCCTGCTTATACTTTAATTGATCCTGGTGCTTCGCATTCTTTTATGTCGAGTAGATTTGCATGTTTCGCGAATGTACCATCATCGCTCCTTATGGCATCACTTAAGATAGAATGGGTTTTTAGAGGTTGTGATGTTTTGATTGAGGGTGTTAGTTTGGAGGTTGATTTAATTCCATTAGACCTTGTTGAATTTGATGTAATCTTGGGGATGGAATTTTTGGCGACTCATCGGGCCAATATTGATTGTTTTCGTAAGATTGTGGTCTTTCGAAGTCCAGGAAAGCCAATTATTACCTTTCAGGGAGAACGTAATGTTCTAGCTTCCTGTATGATTTCCGCTTTGACCGCTGAGAAGCTGTTGAATAAGGGAAGTCAGGCTTATTTGGCACATGTGGTGGACACTAACAGGGAAGAGTTGAGTATTAGAGAGATACCAGTGGTTAGGAAATTTCAGGATGTATTTCCTGACGAATTACCTGGTTTACCTCCTGCTAGGGAGATAGATTTCACTATTGATTTACTCCCTGGCACCACACCCATATCTTTGGCACCATACAGAATGGCCCCAGCTGAATTAAGAGAGTTGAAGATTCAGTTGCAAGAACTAGTGGATAAGGGGTTCATCCAATCTAGTGTGTCTCCTTGGGGTGCCCCGGTTTTATTTGTTAAGAAGAAGGATGGTTCTTTACGGTTGTGCATTGATTATCGAAAGTTGAATAGGGTTACTGTGAAGAATAAATACCCTTTGCCTCGTATTGACGACCTCTTTGACCAGTTGAGGGGAGCCAAGGTCTTTTCCAAGATCGATTTGAGGTCTGGTTACCATCAGTTGAGGATAAGAGAGTCTGATGTACCCAAGACTGCATTTCGATCACGTTATGGGCACTATGAATTCAGAGTGATGCCGTTTGGATTGACTAATGCCCCTGCAGCTTTTATGGACCTCATGAATAGAGTGTTCCGTCCGTACCTTGATCGATTTGTAATTGTGTTCATTGATGATATCTTGGTGTATTCAAAGGACAATAGTCAACATGCCAAACATCTAAGGATTGTATTGCGGACTTTGAGGGAGGCCCAGTTATTTGCAAAGTTCAATAAATGTGAGTTTTGGCTGAATAGTATTGGATTCTTGGGTCATGTAGTATCTGCAGAAGGAATTAGTGTAGACCCTCAGAAAGTAGTGGCGGTGCTAAATTGGGAAAGACCTACCACAGTGACAGAGATACGTAGTTTCTTGGGATTGGCAGGTTATTATCGGCGATTTGTGCAAGATTTCTCAAAGATTGCAACTCCTCTTACTAGGTTGACTAGAAAGGGTGTGAAGTTTGTTTGGTCAGAAGAGTGTGAGCAAAGTTTTCAAGAACTCAAGAGGCGTTTAACTAGTGCTCCGGTCCTAGTTTTGCCAGATGATAGTGGGGAGTATGTGGTATACAGTGACGCCTCGAGGCAAGGCTTGGGTTGTGTTCTGATGCAACATGGAAATGTGATTGCCTACGCCTCTAGACAATTGAAGCCGCATGAGTTGAATTATCCGACACATGACCTTGAATTAGCTGCGGTAGTACTTGCACTTAAACTTTGGAGGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

794

Amino Acids

90.09

Weight (kDa)

8.49

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 67 - 186 1.3e-06 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 92 - 186 3.1e-16 Retrotransposon gag protein
RVP_2 PF08284 236 - 354 7.7e-26 Retroviral aspartyl protease
RVT_1 PF00078 486 - 645 7.1e-38 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 709 - 794 1.6e-27 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 735 - 794 1.5e-15 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 700
AbsI CCTCGAGG 1 cut(s) 2236
Acc36I ACCTGC 1 cut(s) 2030
Acc65I GGTACC 2 cut(s) 617, 638
AccB1I GGYRCC 5 cut(s) 617, 638, 1319, 1339, 1439
AccBSI CCGCTC 1 cut(s) 532
AccI GTMKAC 3 cut(s) 608, 1959, 2223
AccII CGCG 1 cut(s) 860
AclWI GGATC 2 cut(s) 267, 806
AcsI RAATTY 4 cut(s) 980, 1004, 1238, 1682
AcyI GRCGYC 2 cut(s) 697, 2232
AfaI GTAC 8 cut(s) 604, 619, 640, 772, 867, 1644, 1760, 2358
AfeI AGCGCT 1 cut(s) 114
AfiI CCNNNNNNNGG 4 cut(s) 44, 210, 676, 1570
AflII CTTAAG 1 cut(s) 893
AflIII ACRYGT 1 cut(s) 1180
AhdI GACNNNNNGTC 1 cut(s) 585
AhlI ACTAGT 3 cut(s) 611, 1396, 2174
AjnI CCWGG 7 cut(s) 43, 61, 118, 814, 1066, 1267, 1315
AleI CACNNNNGTG 1 cut(s) 381
AloI GAACNNNNNNTCC 2 cut(s) 1394, 1426
AluBI AGCT 9 cut(s) 167, 174, 490, 659, 1112, 1147, 1361, 1724, 2348
AluI AGCT 9 cut(s) 167, 174, 490, 659, 1112, 1147, 1361, 1724, 2348
Alw21I GWGCWC 2 cut(s) 378, 2182
Alw26I GTCTC 1 cut(s) 1434
AlwI GGATC 2 cut(s) 267, 806
Ama87I CYCGRG 1 cut(s) 2236
Aor51HI AGCGCT 1 cut(s) 114
AoxI GGCC 5 cut(s) 346, 742, 1023, 1353, 1866
ApeKI GCWGC 8 cut(s) 97, 110, 475, 656, 666, 673, 1721, 2348
ApoI RAATTY 4 cut(s) 980, 1004, 1238, 1682
ArsI GACNNNNNNTTYG 2 cut(s) 1541, 1573
Asp718I GGTACC 2 cut(s) 617, 638
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 8 cut(s) 315, 347, 742, 1023, 1354, 1732, 1867, 2185
AsuC2I CCSGG 1 cut(s) 1445
AsuHPI GGTGA 1 cut(s) 475
AsuII TTCGAA 1 cut(s) 1060
AsuNHI GCTAGC 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 2236
AvaII GGWCC 3 cut(s) 315, 1732, 2185
AxyI CCTNAGG 1 cut(s) 189
BaeGI GKGCMC 2 cut(s) 1444, 1677
BanI GGYRCC 5 cut(s) 617, 638, 1319, 1339, 1439
BarI GAAGNNNNNNTAC 4 cut(s) 610, 642, 1514, 1546
BauI CACGAG 2 cut(s) 21, 660
BbsI GAAGAC 2 cut(s) 226, 585
Bbv12I GWGCWC 2 cut(s) 378, 2182
BbvI GCAGC 8 cut(s) 109, 122, 487, 668, 678, 685, 1733, 2335
BccI CCATC 7 cut(s) 287, 338, 651, 877, 994, 1463, 1623
BceAI ACGGC 1 cut(s) 1681
BciT130I CCWGG 7 cut(s) 45, 63, 120, 816, 1068, 1269, 1317
BcnI CCSGG 1 cut(s) 1445
BcoDI GTCTC 1 cut(s) 1434
BcuI ACTAGT 3 cut(s) 611, 1396, 2174
BfmI CTRYAG 4 cut(s) 108, 440, 1719, 1941
BfoI RGCGCY 1 cut(s) 116
BfrI CTTAAG 1 cut(s) 893
BfuAI ACCTGC 1 cut(s) 2030
BisI GCNGC 9 cut(s) 98, 111, 476, 657, 667, 674, 1722, 2309, 2349
BlsI GCNGC 9 cut(s) 99, 112, 477, 658, 668, 675, 1723, 2310, 2350
BmcAI AGTACT 1 cut(s) 2358
Bme1390I CCNGG 8 cut(s) 45, 63, 120, 816, 1068, 1269, 1317, 1445
Bme18I GGWCC 3 cut(s) 315, 1732, 2185
BmeRI GACNNNNNGTC 1 cut(s) 585
BmeT110I CYCGRG 1 cut(s) 2236
BmgT120I GGNCC 8 cut(s) 315, 347, 742, 1023, 1354, 1732, 1867, 2185
BmiI GGNNCC 8 cut(s) 124, 619, 640, 1321, 1341, 1356, 1441, 1576
BmrFI CCNGG 8 cut(s) 45, 63, 120, 816, 1068, 1269, 1317, 1445
BmrI ACTGGG 2 cut(s) 490, 1864
BmsI GCATC 7 cut(s) 2, 190, 445, 541, 896, 1683, 2253
BmtI GCTAGC 1 cut(s) 494
BmuI ACTGGG 2 cut(s) 490, 1864
BoxI GACNNNNGTC 1 cut(s) 1818
BpiI GAAGAC 2 cut(s) 226, 585
BpmI CTGGAG 2 cut(s) 84, 109
Bpu14I TTCGAA 1 cut(s) 1060
BpuEI CTTGAG 1 cut(s) 2144
BpuMI CCSGG 1 cut(s) 1445
Bsa29I ATCGAT 3 cut(s) 342, 1596, 1768
BsaAI YACGTR 1 cut(s) 2021
BsaHI GRCGYC 2 cut(s) 697, 2232
BsaJI CCNNGG 6 cut(s) 141, 621, 1315, 1433, 1443, 1578
BsaWI WCCGGW 1 cut(s) 2182
BsaXI ACNNNNNCTCC 6 cut(s) 1566, 1596, 1856, 1886, 2164, 2194
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 210, 676, 1570
Bse118I RCCGGY 1 cut(s) 599
Bse1I ACTGG 4 cut(s) 496, 1226, 1564, 1870
Bse21I CCTNAGG 1 cut(s) 189
Bse3DI GCAATG 1 cut(s) 247
BseBI CCWGG 7 cut(s) 45, 63, 120, 816, 1068, 1269, 1317
BseCI ATCGAT 3 cut(s) 342, 1596, 1768
BseDI CCNNGG 6 cut(s) 141, 621, 1315, 1433, 1443, 1578
BseGI GGATG 7 cut(s) 205, 298, 423, 1005, 1252, 1413, 1474
BseLI CCNNNNNNNGG 4 cut(s) 44, 210, 676, 1570
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 5 cut(s) 180, 513, 722, 1131, 1979
BseNI ACTGG 4 cut(s) 496, 1226, 1564, 1870
BseRI GAGGAG 1 cut(s) 2076
BseSI GKGCMC 2 cut(s) 1444, 1677
BseXI GCAGC 8 cut(s) 109, 122, 487, 668, 678, 685, 1733, 2335
BseYI CCCAGC 2 cut(s) 486, 1357
BsgI GTGCAG 1 cut(s) 116
Bsh1236I CGCG 1 cut(s) 860
BshFI GGCC 5 cut(s) 348, 744, 1025, 1355, 1868
BshNI GGYRCC 5 cut(s) 617, 638, 1319, 1339, 1439
BshVI ATCGAT 3 cut(s) 342, 1596, 1768
BsiHKAI GWGCWC 2 cut(s) 378, 2182
BsiHKCI CYCGRG 1 cut(s) 2236
BsiSI CCGG 4 cut(s) 16, 600, 1445, 2183
BslFI GGGAC 2 cut(s) 99, 464
BslI CCNNNNNNNGG 4 cut(s) 44, 210, 676, 1570
BsmAI GTCTC 1 cut(s) 1434
BsmFI GGGAC 2 cut(s) 99, 464
BsmI GAATGC 1 cut(s) 826
BsnI GGCC 5 cut(s) 348, 744, 1025, 1355, 1868
BsoBI CYCGRG 1 cut(s) 2236
Bsp119I TTCGAA 1 cut(s) 1060
Bsp1286I GDGCHC 4 cut(s) 378, 1444, 1677, 2182
Bsp143I GATC 6 cut(s) 259, 339, 811, 1593, 1661, 1765
Bsp19I CCATGG 1 cut(s) 141
Bsp68I TCGCGA 1 cut(s) 860
BspANI GGCC 5 cut(s) 348, 744, 1025, 1355, 1868
BspCNI CTCAG 5 cut(s) 181, 514, 721, 1132, 1978
BspDI ATCGAT 3 cut(s) 342, 1596, 1768
BspFNI CGCG 1 cut(s) 860
BspHI TCATGA 1 cut(s) 1737
BspLI GGNNCC 8 cut(s) 124, 619, 640, 1321, 1341, 1356, 1441, 1576
BspMAI CTGCAG 3 cut(s) 112, 1723, 1945
BspMI ACCTGC 1 cut(s) 2030
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 2 cut(s) 267, 806
BspT104I TTCGAA 1 cut(s) 1060
BspT107I GGYRCC 5 cut(s) 617, 638, 1319, 1339, 1439
BspTI CTTAAG 1 cut(s) 893
BsrBI CCGCTC 1 cut(s) 532
BsrDI GCAATG 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 599
BsrI ACTGG 4 cut(s) 496, 1226, 1564, 1870
BssAI RCCGGY 1 cut(s) 599
BssECI CCNNGG 6 cut(s) 141, 621, 1315, 1433, 1443, 1578
BssMI GATC 6 cut(s) 259, 339, 811, 1593, 1661, 1765
BssNAI GTATAC 1 cut(s) 2224
BssNI GRCGYC 2 cut(s) 697, 2232
BssSI CACGAG 2 cut(s) 21, 660
BssT1I CCWWGG 3 cut(s) 141, 1433, 1578
Bst1107I GTATAC 1 cut(s) 2224
Bst2BI CACGAG 2 cut(s) 21, 660
Bst2UI CCWGG 7 cut(s) 45, 63, 120, 816, 1068, 1269, 1317
Bst4CI ACNGT 7 cut(s) 366, 460, 622, 1482, 1519, 2008, 2228
Bst6I CTCTTC 3 cut(s) 149, 1197, 2127
BstACI GRCGYC 2 cut(s) 697, 2232
BstAFI CTTAAG 1 cut(s) 893
BstBAI YACGTR 1 cut(s) 2021
BstBI TTCGAA 1 cut(s) 1060
BstC8I GCNNGC 6 cut(s) 150, 492, 561, 671, 723, 795
BstDEI CTNAG 6 cut(s) 189, 522, 708, 1140, 1838, 1965
BstDSI CCRYGG 2 cut(s) 141, 621
BstEII GGTNACC 1 cut(s) 1610
BstF5I GGATG 7 cut(s) 205, 298, 423, 1005, 1252, 1413, 1474
BstFNI CGCG 1 cut(s) 860
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 6 cut(s) 262, 342, 814, 1596, 1664, 1768
BstMAI GTCTC 1 cut(s) 1434
BstMBI GATC 6 cut(s) 259, 339, 811, 1593, 1661, 1765
BstMWI GCNNNNNNNGC 8 cut(s) 191, 200, 560, 857, 1136, 1175, 1721, 2059
BstNI CCWGG 7 cut(s) 45, 63, 120, 816, 1068, 1269, 1317
BstNSI RCATGY 4 cut(s) 725, 855, 1184, 1829
BstPAI GACNNNNGTC 1 cut(s) 1818
BstPI GGTNACC 1 cut(s) 1610
BstSCI CCNGG 8 cut(s) 43, 61, 118, 814, 1066, 1267, 1315, 1443
BstSFI CTRYAG 4 cut(s) 108, 440, 1719, 1941
BstSLI GKGCMC 2 cut(s) 1444, 1677
BstSNI TACGTA 1 cut(s) 2021
BstUI CGCG 1 cut(s) 860
BstV1I GCAGC 8 cut(s) 109, 122, 487, 668, 678, 685, 1733, 2335
BstV2I GAAGAC 2 cut(s) 226, 585
BstXI CCANNNNNNTGG 2 cut(s) 357, 1336
BstZ17I GTATAC 1 cut(s) 2224
Bsu15I ATCGAT 3 cut(s) 342, 1596, 1768
Bsu36I CCTNAGG 1 cut(s) 189
BsuRI GGCC 5 cut(s) 348, 744, 1025, 1355, 1868
BsuTUI ATCGAT 3 cut(s) 342, 1596, 1768
BtgI CCRYGG 2 cut(s) 141, 621
BtgZI GCGATG 1 cut(s) 858
BtsCI GGATG 7 cut(s) 205, 298, 423, 1005, 1252, 1413, 1474
BtsIMutI CAGTG 4 cut(s) 519, 1233, 2013, 2233
BtuMI TCGCGA 1 cut(s) 860
BveI ACCTGC 1 cut(s) 2030
Cac8I GCNNGC 6 cut(s) 150, 492, 561, 671, 723, 795
CciI TCATGA 1 cut(s) 1737
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 599
Cfr13I GGNCC 8 cut(s) 315, 347, 742, 1023, 1354, 1732, 1867, 2185
ClaI ATCGAT 3 cut(s) 342, 1596, 1768
CseI GACGC 1 cut(s) 2240
CsiI ACCWGGT 1 cut(s) 1267
Csp6I GTAC 8 cut(s) 603, 618, 639, 771, 866, 1643, 1759, 2357
CviQI GTAC 8 cut(s) 603, 618, 639, 771, 866, 1643, 1759, 2357
DdeI CTNAG 6 cut(s) 189, 522, 708, 1140, 1838, 1965
DpnI GATC 6 cut(s) 261, 341, 813, 1595, 1663, 1767
DpnII GATC 6 cut(s) 259, 339, 811, 1593, 1661, 1765
DriI GACNNNNNGTC 1 cut(s) 585
Eam1104I CTCTTC 3 cut(s) 149, 1197, 2127
Eam1105I GACNNNNNGTC 1 cut(s) 585
EarI CTCTTC 3 cut(s) 149, 1197, 2127
Eco105I TACGTA 1 cut(s) 2021
Eco130I CCWWGG 3 cut(s) 141, 1433, 1578
Eco32I GATATC 1 cut(s) 1795
Eco47I GGWCC 3 cut(s) 315, 1732, 2185
Eco47III AGCGCT 1 cut(s) 114
Eco81I CCTNAGG 1 cut(s) 189
Eco88I CYCGRG 1 cut(s) 2236
Eco91I GGTNACC 1 cut(s) 1610
EcoO65I GGTNACC 1 cut(s) 1610
EcoRI GAATTC 1 cut(s) 1682
EcoRII CCWGG 7 cut(s) 43, 61, 118, 814, 1066, 1267, 1315
EcoRV GATATC 1 cut(s) 1795
EcoT14I CCWWGG 3 cut(s) 141, 1433, 1578
EcoT22I ATGCAT 1 cut(s) 438
ErhI CCWWGG 3 cut(s) 141, 1433, 1578
FalI AAGNNNNNCTT 2 cut(s) 1153, 1185
FaqI GGGAC 2 cut(s) 99, 464
FauI CCCGC 2 cut(s) 577, 669
FblI GTMKAC 3 cut(s) 608, 1959, 2223
Fnu4HI GCNGC 9 cut(s) 98, 111, 476, 657, 667, 674, 1722, 2309, 2349
FokI GGATG 7 cut(s) 212, 305, 430, 1012, 1259, 1400, 1481
Fsp4HI GCNGC 9 cut(s) 98, 111, 476, 657, 667, 674, 1722, 2309, 2349
GlaI GCGC 1 cut(s) 114
GluI GCNGC 9 cut(s) 98, 111, 476, 657, 667, 674, 1722, 2309, 2349
GsaI CCCAGC 2 cut(s) 490, 1361
GsuI CTGGAG 2 cut(s) 84, 109
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 5 cut(s) 348, 744, 1025, 1355, 1868
HapII CCGG 4 cut(s) 16, 600, 1445, 2183
HgaI GACGC 1 cut(s) 2240
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 2 cut(s) 697, 2232
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 3 cut(s) 105, 1823, 2100
HindII GTYRAC 3 cut(s) 105, 1823, 2100
HinfI GANTC 7 cut(s) 19, 231, 749, 1015, 1381, 1634, 1920
HpaII CCGG 4 cut(s) 16, 600, 1445, 2183
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 9 cut(s) 105, 483, 609, 1189, 1274, 1823, 1960, 2100, 2224
Hpy188I TCNGA 8 cut(s) 579, 690, 1639, 1688, 1968, 2131, 2262, 2328
Hpy8I GTNNAC 9 cut(s) 105, 483, 609, 1189, 1274, 1823, 1960, 2100, 2224
HpyAV CCTTC 2 cut(s) 1459, 1940
HpyCH4III ACNGT 7 cut(s) 366, 460, 622, 1482, 1519, 2008, 2228
HpyCH4IV ACGT 7 cut(s) 88, 605, 697, 773, 1099, 1666, 2020
HpyF10VI GCNNNNNNNGC 8 cut(s) 191, 200, 560, 857, 1136, 1175, 1721, 2059
HpyF3I CTNAG 6 cut(s) 189, 522, 708, 1140, 1838, 1965
HpySE526I ACGT 7 cut(s) 88, 605, 697, 773, 1099, 1666, 2020
Hsp92I GRCGYC 2 cut(s) 697, 2232
HspAI GCGC 1 cut(s) 113
KpnI GGTACC 2 cut(s) 621, 642
Kzo9I GATC 6 cut(s) 259, 339, 811, 1593, 1661, 1765
LmnI GCTCC 8 cut(s) 128, 145, 164, 190, 529, 882, 1574, 2185
Lsp1109I GCAGC 8 cut(s) 109, 122, 487, 668, 678, 685, 1733, 2335
LweI GCATC 7 cut(s) 2, 190, 445, 541, 896, 1683, 2253
MabI ACCWGGT 1 cut(s) 1267
MaeII ACGT 7 cut(s) 88, 605, 697, 773, 1099, 1666, 2020
MaeIII GTNAC 5 cut(s) 460, 1513, 1610, 2008, 2228
MalI GATC 6 cut(s) 261, 341, 813, 1595, 1663, 1767
MbiI CCGCTC 1 cut(s) 532
MboI GATC 6 cut(s) 259, 339, 811, 1593, 1661, 1765
MboII GAAGA 8 cut(s) 166, 226, 585, 1214, 1390, 1474, 1534, 2144
MfeI CAATTG 1 cut(s) 2300
MhlI GDGCHC 4 cut(s) 378, 1444, 1677, 2182
MlyI GAGTC 5 cut(s) 13, 240, 743, 1009, 1643
MmeI TCCRAC 1 cut(s) 2351
Mph1103I ATGCAT 1 cut(s) 438
MseI TTAA 8 cut(s) 806, 894, 959, 1367, 1458, 2171, 2367, 2383
MslI CAYNNNNRTG 2 cut(s) 381, 2274
MspA1I CMGCKG 5 cut(s) 478, 584, 676, 1139, 1361
MspCI CTTAAG 1 cut(s) 893
MspI CCGG 4 cut(s) 16, 600, 1445, 2183
MspR9I CCNGG 8 cut(s) 45, 63, 120, 816, 1068, 1269, 1317, 1445
MunI CAATTG 1 cut(s) 2300
Mva1269I GAATGC 1 cut(s) 826
MvaI CCWGG 7 cut(s) 45, 63, 120, 816, 1068, 1269, 1317
MvnI CGCG 1 cut(s) 860
MwoI GCNNNNNNNGC 8 cut(s) 191, 200, 560, 857, 1136, 1175, 1721, 2059
NciI CCSGG 1 cut(s) 1445
NcoI CCATGG 1 cut(s) 141
NdeII GATC 6 cut(s) 259, 339, 811, 1593, 1661, 1765
NheI GCTAGC 1 cut(s) 490
NlaIV GGNNCC 8 cut(s) 124, 619, 640, 1321, 1341, 1356, 1441, 1576
NmuCI GTSAC 2 cut(s) 2008, 2228
NruI TCGCGA 1 cut(s) 860
NsiI ATGCAT 1 cut(s) 438
NspI RCATGY 4 cut(s) 725, 855, 1184, 1829
NspV TTCGAA 1 cut(s) 1060
OliI CACNNNNGTG 1 cut(s) 381
PaeI GCATGC 1 cut(s) 725
PaeR7I CTCGAG 1 cut(s) 2236
PagI TCATGA 1 cut(s) 1737
PciI ACATGT 1 cut(s) 1180
PctI GAATGC 1 cut(s) 826
PfeI GAWTC 2 cut(s) 1381, 1920
PfoI TCCNGGA 3 cut(s) 43, 61, 1066
PkrI GCNGC 9 cut(s) 99, 112, 477, 658, 668, 675, 1723, 2310, 2350
PleI GAGTC 5 cut(s) 13, 239, 743, 1009, 1642
PpsI GAGTC 5 cut(s) 13, 239, 743, 1009, 1642
Ppu21I YACGTR 1 cut(s) 2021
PscI ACATGT 1 cut(s) 1180
PshAI GACNNNNGTC 1 cut(s) 1818
Psp6I CCWGG 7 cut(s) 43, 61, 118, 814, 1066, 1267, 1315
PspEI GGTNACC 1 cut(s) 1610
PspFI CCCAGC 2 cut(s) 486, 1357
PspGI CCWGG 7 cut(s) 43, 61, 118, 814, 1066, 1267, 1315
PspN4I GGNNCC 8 cut(s) 124, 619, 640, 1321, 1341, 1356, 1441, 1576
PspPI GGNCC 8 cut(s) 315, 347, 742, 1023, 1354, 1732, 1867, 2185
PspXI VCTCGAGB 1 cut(s) 2236
PsrI GAACNNNNNNTAC 2 cut(s) 121, 153
PstI CTGCAG 3 cut(s) 112, 1723, 1945
PvuII CAGCTG 1 cut(s) 1361
RruI TCGCGA 1 cut(s) 860
RsaI GTAC 8 cut(s) 604, 619, 640, 772, 867, 1644, 1760, 2358
RsaNI GTAC 8 cut(s) 603, 618, 639, 771, 866, 1643, 1759, 2357
RseI CAYNNNNRTG 2 cut(s) 381, 2274
SaqAI TTAA 8 cut(s) 806, 894, 959, 1367, 1458, 2171, 2367, 2383
SatI GCNGC 9 cut(s) 98, 111, 476, 657, 667, 674, 1722, 2309, 2349
Sau3AI GATC 6 cut(s) 259, 339, 811, 1593, 1661, 1765
Sau96I GGNCC 8 cut(s) 315, 347, 742, 1023, 1354, 1732, 1867, 2185
ScaI AGTACT 1 cut(s) 2358
SchI GAGTC 5 cut(s) 13, 240, 743, 1009, 1643
ScrFI CCNGG 8 cut(s) 45, 63, 120, 816, 1068, 1269, 1317, 1445
SduI GDGCHC 4 cut(s) 378, 1444, 1677, 2182
SexAI ACCWGGT 1 cut(s) 1267
SfaNI GCATC 7 cut(s) 2, 190, 445, 541, 896, 1683, 2253
SfcI CTRYAG 4 cut(s) 108, 440, 1719, 1941
Sfr274I CTCGAG 1 cut(s) 2236
SfuI TTCGAA 1 cut(s) 1060
SinI GGWCC 3 cut(s) 315, 1732, 2185
SlaI CTCGAG 1 cut(s) 2236
SmiMI CAYNNNNRTG 2 cut(s) 381, 2274
SmlI CTYRAG 3 cut(s) 893, 2159, 2236
SmoI CTYRAG 3 cut(s) 893, 2159, 2236
SnaBI TACGTA 1 cut(s) 2021
SpeI ACTAGT 3 cut(s) 611, 1396, 2174
SphI GCATGC 1 cut(s) 725
SspI AATATT 1 cut(s) 1030
StyD4I CCNGG 8 cut(s) 43, 61, 118, 814, 1066, 1267, 1315, 1443
StyI CCWWGG 3 cut(s) 141, 1433, 1578
TaaI ACNGT 7 cut(s) 366, 460, 622, 1482, 1519, 2008, 2228
TaiI ACGT 7 cut(s) 91, 608, 700, 776, 1102, 1669, 2023
TaqI TCGA 9 cut(s) 262, 342, 839, 1060, 1498, 1596, 1660, 1768, 2237
TatI WGTACW 1 cut(s) 2356
TauI GCSGC 1 cut(s) 2311
TfiI GAWTC 2 cut(s) 1381, 1920
Tru1I TTAA 8 cut(s) 806, 894, 959, 1367, 1458, 2171, 2367, 2383
Tru9I TTAA 8 cut(s) 806, 894, 959, 1367, 1458, 2171, 2367, 2383
TscAI CASTG 4 cut(s) 526, 1233, 2013, 2233
TseFI GTSAC 2 cut(s) 2008, 2228
TseI GCWGC 8 cut(s) 97, 110, 475, 656, 666, 673, 1721, 2348
Tsp45I GTSAC 2 cut(s) 2008, 2228
TspDTI ATGAA 6 cut(s) 421, 434, 1402, 1695, 1754, 1774
TspGWI ACGGA 2 cut(s) 1742, 1746
TspRI CASTG 4 cut(s) 526, 1233, 2013, 2233
Vha464I CTTAAG 1 cut(s) 893
VpaK11BI GGWCC 3 cut(s) 315, 1732, 2185
XapI RAATTY 4 cut(s) 980, 1004, 1238, 1682
XbaI TCTAGA 1 cut(s) 2294
XceI RCATGY 4 cut(s) 725, 855, 1184, 1829
XhoI CTCGAG 1 cut(s) 2236
XmiI GTMKAC 3 cut(s) 608, 1959, 2223
ZraI GACGTC 1 cut(s) 698
ZrmI AGTACT 1 cut(s) 2358
Zsp2I ATGCAT 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.