FvH4_4g15471

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Forward (+)
19145107 .. 19149673
4567 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15471.t1

Sequence Viewer

Length: 4446 bp
ATGCCTCCTAGGCGCCCACGGCAACCCCGTGTGGCTACTTCGACCAATGCCGATGAAGGCAATGAGGTCAGGGGACTGGTTGATGATATTGGGAATATGCTGAGGGATGTCATGGATCGAGCTCCACAACCTCATTCTGTGAAAAGGAGAGAAGTTTTTGAAGCTGGAGCCAGAGAGTTCAAGGGTGCCAAGGGACCCCTTGATGCTTATACGTGGGTGGACAAAATGGAAAAAGCTTTTGTGAGCACAGAGTTGCCAGATGAAAAGAAGGTGAAGATGGCAGTAACTTTCCTGGATGATTCAGCACATCACTGGTGGTCGCTTGCCAGCAGGAATGTTGAGGATGCGCTGAATATGTCGTGGGAACAGTTTAAGACTCTTTTCTTGGGGCAATATTTCAGTCCTGCCCATCGCAGCAGAATTCAGTCAGATTTCCTGAATATAAAGAAGAGGGATGATGAAGGCGTTATAGAGTTCCAAGAGAGATTCACTTCCCTAAGCTATCATGTGTCGTATTTGGTTCCTGATGAGAGGACCAAGATGGAGATGTTCATTGGGGCACTTGGTGGAGTGTTTGCGGATAAGATGACGGGTGTTTATTACCCGACTTTTTCTGACGCGGTTCATGCAGCCATGGCCATTGAGTCTATGGGGATTTATAGTGCTCGGCCACGAGATTTCGGTGGTCCCAGTCAGGGTCCATCTAAGAAAGCTGTTTCATCATCCGCTTCAGGTTCATCAGCTGGTAGTGGCAGTAGTGGGGGATCAGGTTCTCCTTCTCGGTTCAGGGTTAGAGGACGTCACAGGAGACCTGCTAGGAGCCAGTTGGGTAGGCAGCAGTCCGGGCAGTATAGTTCGGGTGGCAGTTTCCATGGTGGGACATCTGGTAGCCGAACTTTTTCTTATGGGCAGCAGCAGCAGTTTTCTGGGTGCTTTGAGTGTGGTAGTCATGACCACTTCAGGAGAGATTGCCCATTGTTGGCTCAGAGGACCACTCCCACCCCTACTCAGCCTATTGGTCAGTCTTCAGCTGGAGGCTCTAGTAGTGGTGCCCAGGGCAGTGCTTCGGTCAGAGGTGGCTCTCAGCGGGGAAGTGGTCAGCGTGGACGTCCCATGACTCGCGCTAGACTGCATGCTATGACCCAGCAGGAGGGTCGTACTTCTCCAGATGTCATCATTGGTACCTTATTGATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTAGATTTGCCCTCCATGCCAATGTGCCATCCTCGTCTCTTCTAGGCGAGTGGCATGTGTCTCTACCCTCCGGTGAGGTGATGAGAATAAATTGGGTATTTAGTGGATGTGAAGTCTTAGTGGAAGGAATTAATTTCGAGGCTGATTTAATTCCTTTAGATATAGTGGAGTTTGATGTGATCTTGGGAATGGACTTTTTGGAAGCATATAGAGCTATGGTAGATTGTTTCCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTTTGAGGTTGCTTTCCAAGGGGAAAGAGATGTTATTTTTAGTTGCATAATTTCCGCTGTTGCTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTCTAGCTCATGTGGTGGATACAAGTATGGGAGTTGTGGGATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGATATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCGATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAACTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCCGGTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGGAAGCTGAATCAGAGAGGGGACATAGCCAAGACTGCTTTTCGGTCACGATATGGTCATTATGAGTTTGTGGTGATGCCATTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATACCTTGATCGTTTCGTGATCGTATTTATAGATGACATTTTGGTTTACTCAAGAAGTAAGAAAGAGCATGCCAAGCATCTAAGAATAATATTGCGGACTTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTAGATAAAGTGGGGTTCTTGGGTCATGTGATTTCGGCAGAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGCTACTCCTCTCACAAAGTTGACCAGAAAAGGGGTTAAGTTTGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCATGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCGGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAAAGAGAGCTTAATATGAGACAGAGAAGATGGATGGAGTTAATCAGTGATTATGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTGTCAGTGGATAAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATTCTTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGGGACTCTATTGTTTAAAAATCGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCATAGCTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCAAGGCCGAAAGGCAGAAGCCTTCAGGATTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGCTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTAGATAAATTGGCGGAGCTCTATGTGAATGAAATTGTGAGGCTTCACGGTGTTCCTGAATCAATAGTGTCAGATCGGGACCCTCGATTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGTTCAGAGGTAGTTGGGATAAAAACCTATCTTTGATGGAATTTGCCTATAATAATAGCTATCATTCTAGCATTGGTATGGCGCCCTTTGAGGCTCTTTATGGGAGGCAGTGTCGCACGCCTTTGTGTTGGAATGAAGTAGGGGAAAAAGAGCTTTGTGGCCCAGAGTTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAAGACTGCTCAGAGTAGGCAGAAAAGTTATGCGGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTGGGTGTTCCTGAAATTATCTCCTTGGAAAGGGGTTGTGCGTTTCGGTAAGCGTGGGAAGCTTAGTCCGAGGTATATTGGCCCTTATGAGATTATAGAGCGAGTTGGTTCACTTGCTTATCGATTGGCCTTGCCTCCAGAGTTATCCCGGATACATAATGTGTTTCATGTATCCATGCTTCGCAAGTATATTGCCGATCCTTCTCATGTGTTGCAAGAGCAGCCGATCAGTTTGACGAGAGATTTGACCTATGAAGAGGAACCGGTTCAGATTCTCGACCGAAAGGAGCAAGTGCTTAGGAACAAGACAATCCCGCTTGTCAAAGTGCTGTGGAGAAGTCATCAAGTAGAAGAAGCTACTTGGGAATCAGAGGAGCAAATGATGCAGCAGTATCCGTATCTCTTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

1482

Amino Acids

167.46

Weight (kDa)

9.05

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 92 - 188 4.7e-15 Retrotransposon gag protein
RVP_2 PF08284 372 - 502 1.7e-33 Retroviral aspartyl protease
RVT_1 PF00078 662 - 753 2.3e-20 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 816 - 910 3.1e-31 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 842 - 940 1.2e-32 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 1055 - 1112 4.2e-20 Integrase zinc binding domain
SH3_Tf2-1 PF24626 1344 - 1408 6.3e-28 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 802, 1111
Acc36I ACCTGC 2 cut(s) 820, 2351
Acc65I GGTACC 2 cut(s) 1181, 3647
AccB1I GGYRCC 8 cut(s) 12, 185, 1049, 1181, 1780, 1913, 3647, 3829
AccB7I CCANNNNNTGG 1 cut(s) 2293
AccII CGCG 3 cut(s) 620, 1122, 2042
AccIII TCCGGA 2 cut(s) 1684, 2518
AclWI GGATC 7 cut(s) 123, 772, 1217, 2061, 2276, 2289, 4226
AcoI YGGCCR 3 cut(s) 636, 668, 3269
AcsI RAATTY 4 cut(s) 420, 3617, 3788, 4019
AcuI CTGAAG 6 cut(s) 714, 943, 1011, 3336, 3617, 3646
AcyI GRCGYC 5 cut(s) 13, 799, 1108, 1781, 3830
AdeI CACNNNGTG 1 cut(s) 566
AfaI GTAC 4 cut(s) 1159, 1183, 3433, 3649
AfiI CCNNNNNNNGG 8 cut(s) 695, 979, 1150, 2293, 2430, 2636, 3441, 4064
AgeI ACCGGT 1 cut(s) 4297
AjiI CACGTC 1 cut(s) 2564
AjnI CCWGG 4 cut(s) 291, 1053, 1708, 2842
AleI CACNNNNGTG 1 cut(s) 2327
Alw21I GWGCWC 7 cut(s) 124, 248, 667, 1885, 2503, 3540, 3631
Alw26I GTCTC 7 cut(s) 802, 1293, 1317, 1875, 1915, 2692, 2779
AlwI GGATC 7 cut(s) 123, 772, 1217, 2061, 2276, 2289, 4226
Aor13HI TCCGGA 2 cut(s) 1684, 2518
AoxI GGCC 9 cut(s) 636, 668, 1859, 3005, 3269, 3333, 3907, 4114, 4161
ApoI RAATTY 4 cut(s) 420, 3617, 3788, 4019
ArsI GACNNNNNNTTYG 4 cut(s) 3590, 3622, 4261, 4293
AseI ATTAAT 1 cut(s) 1383
AsiGI ACCGGT 1 cut(s) 4297
Asp700I GAANNNNTTC 4 cut(s) 898, 1662, 1752, 4299
Asp718I GGTACC 2 cut(s) 1181, 3647
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 6 cut(s) 15, 349, 1124, 1783, 2376, 3832
AspS9I GGNCC 9 cut(s) 194, 534, 686, 698, 990, 3394, 3598, 3908, 4115
AsuC2I CCSGG 5 cut(s) 844, 1227, 1758, 3225, 4183
AsuHPI GGTGA 8 cut(s) 283, 1337, 1342, 2023, 3394, 3469, 3472, 4043
AsuII TTCGAA 2 cut(s) 1501, 3080
AvaII GGWCC 7 cut(s) 194, 534, 686, 698, 990, 3394, 3598
AvrII CCTAGG 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 1698
BaeGI GKGCMC 2 cut(s) 562, 1054
BalI TGGCCA 2 cut(s) 638, 3271
BamHI GGATCC 1 cut(s) 2281
BanI GGYRCC 8 cut(s) 12, 185, 1049, 1181, 1780, 1913, 3647, 3829
BanII GRGCYC 3 cut(s) 124, 3540, 3631
BarI GAAGNNNNNNTAC 4 cut(s) 1482, 1514, 4197, 4229
BauI CACGAG 1 cut(s) 672
BbsI GAAGAC 4 cut(s) 1017, 1826, 2323, 2741
Bbv12I GWGCWC 7 cut(s) 124, 248, 667, 1885, 2503, 3540, 3631
BbvCI CCTCAGC 1 cut(s) 101
BceAI ACGGC 2 cut(s) 35, 3352
BcgI CGANNNNNNTGC 4 cut(s) 1136, 1170, 2576, 2610
BciT130I CCWGG 4 cut(s) 293, 1055, 1710, 2844
BciVI GTATCC 4 cut(s) 1624, 4179, 4216, 4437
BcnI CCSGG 5 cut(s) 844, 1227, 1758, 3225, 4183
BcoDI GTCTC 7 cut(s) 802, 1293, 1317, 1875, 1915, 2692, 2779
BfmI CTRYAG 4 cut(s) 1668, 1743, 1829, 2946
BfoI RGCGCY 4 cut(s) 16, 1784, 2377, 3833
BfuAI ACCTGC 2 cut(s) 820, 2351
BfuI GTATCC 4 cut(s) 1624, 4179, 4216, 4437
BglI GCCNNNNNGGC 1 cut(s) 10
BglII AGATCT 1 cut(s) 4012
BlnI CCTAGG 1 cut(s) 8
Bme1390I CCNGG 9 cut(s) 293, 844, 1055, 1227, 1710, 1758, 2844, 3225, 4183
Bme18I GGWCC 7 cut(s) 194, 534, 686, 698, 990, 3394, 3598
BmgBI CACGTC 1 cut(s) 2564
BmgT120I GGNCC 9 cut(s) 194, 534, 686, 698, 990, 3394, 3598, 3908, 4115
BmrFI CCNGG 9 cut(s) 293, 844, 1055, 1227, 1710, 1758, 2844, 3225, 4183
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 8 cut(s) 193, 334, 2004, 2164, 2542, 2574, 2857, 4407
BmuI ACTGGG 1 cut(s) 684
BpiI GAAGAC 4 cut(s) 1017, 1826, 2323, 2741
BplI GAGNNNNNCTC 4 cut(s) 979, 1011, 3945, 3977
BpmI CTGGAG 6 cut(s) 186, 1053, 1149, 1782, 2681, 4155
Bpu10I CCTNAGC 3 cut(s) 101, 497, 4331
Bpu14I TTCGAA 2 cut(s) 1501, 3080
BpuEI CTTGAG 4 cut(s) 2113, 2672, 3383, 3947
BpuMI CCSGG 5 cut(s) 844, 1227, 1758, 3225, 4183
Bsa29I ATCGAT 1 cut(s) 4156
BsaAI YACGTR 1 cut(s) 213
BsaHI GRCGYC 5 cut(s) 13, 799, 1108, 1781, 3830
BsaI GGTCTC 1 cut(s) 802
BsaWI WCCGGW 5 cut(s) 1322, 1684, 1885, 2518, 4297
BsaXI ACNNNNNCTCC 8 cut(s) 2262, 2292, 2523, 2553, 3713, 3743, 3844, 3874
Bsc4I CCNNNNNNNGG 8 cut(s) 695, 979, 1150, 2293, 2430, 2636, 3441, 4064
Bse118I RCCGGY 1 cut(s) 4297
Bse1I ACTGG 8 cut(s) 81, 317, 690, 823, 2991, 3008, 3380, 3500
Bse21I CCTNAGG 1 cut(s) 1698
Bse3DI GCAATG 1 cut(s) 67
BseAI TCCGGA 2 cut(s) 1684, 2518
BseBI CCWGG 4 cut(s) 293, 1055, 1710, 2844
BseCI ATCGAT 1 cut(s) 4156
BseLI CCNNNNNNNGG 8 cut(s) 695, 979, 1150, 2293, 2430, 2636, 3441, 4064
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 8 cut(s) 92, 998, 1022, 1097, 1689, 1790, 3695, 3986
BseNI ACTGG 8 cut(s) 81, 317, 690, 823, 2991, 3008, 3380, 3500
BseRI GAGGAG 3 cut(s) 1715, 2397, 4421
BseSI GKGCMC 2 cut(s) 562, 1054
BseYI CCCAGC 1 cut(s) 1143
BsgI GTGCAG 1 cut(s) 3471
Bsh1236I CGCG 3 cut(s) 620, 1122, 2042
Bsh1285I CGRYCG 1 cut(s) 4315
BshFI GGCC 9 cut(s) 638, 670, 1861, 3007, 3271, 3335, 3909, 4116, 4163
BshNI GGYRCC 8 cut(s) 12, 185, 1049, 1181, 1780, 1913, 3647, 3829
BshTI ACCGGT 1 cut(s) 4297
BshVI ATCGAT 1 cut(s) 4156
BsiEI CGRYCG 1 cut(s) 4315
BsiHKAI GWGCWC 7 cut(s) 124, 248, 667, 1885, 2503, 3540, 3631
BslFI GGGAC 9 cut(s) 87, 207, 672, 892, 1095, 1973, 3136, 3407, 3611
BslI CCNNNNNNNGG 8 cut(s) 695, 979, 1150, 2293, 2430, 2636, 3441, 4064
BsmAI GTCTC 7 cut(s) 802, 1293, 1317, 1875, 1915, 2692, 2779
BsmBI CGTCTC 1 cut(s) 1293
BsmFI GGGAC 9 cut(s) 87, 207, 672, 892, 1095, 1973, 3136, 3407, 3611
BsmI GAATGC 1 cut(s) 1237
BsnI GGCC 9 cut(s) 638, 670, 1861, 3007, 3271, 3335, 3909, 4116, 4163
Bso31I GGTCTC 1 cut(s) 802
Bsp119I TTCGAA 2 cut(s) 1501, 3080
Bsp1286I GDGCHC 9 cut(s) 124, 248, 562, 667, 1054, 1885, 2503, 3540, 3631
Bsp13I TCCGGA 2 cut(s) 1684, 2518
Bsp19I CCATGG 4 cut(s) 633, 871, 1874, 3405
BspANI GGCC 9 cut(s) 638, 670, 1861, 3007, 3271, 3335, 3909, 4116, 4163
BspCNI CTCAG 8 cut(s) 93, 997, 1021, 1096, 1690, 1789, 3694, 3985
BspDI ATCGAT 1 cut(s) 4156
BspEI TCCGGA 2 cut(s) 1684, 2518
BspFNI CGCG 3 cut(s) 620, 1122, 2042
BspHI TCATGA 3 cut(s) 949, 2058, 2653
BspMAI CTGCAG 1 cut(s) 1833
BspMI ACCTGC 2 cut(s) 820, 2351
BspPI GGATC 7 cut(s) 123, 772, 1217, 2061, 2276, 2289, 4226
BspQI GCTCTTC 1 cut(s) 3636
BspT104I TTCGAA 2 cut(s) 1501, 3080
BspT107I GGYRCC 8 cut(s) 12, 185, 1049, 1181, 1780, 1913, 3647, 3829
BspTNI GGTCTC 1 cut(s) 802
BsrDI GCAATG 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 4297
BsrI ACTGG 8 cut(s) 81, 317, 690, 823, 2991, 3008, 3380, 3500
BssAI RCCGGY 1 cut(s) 4297
BssNI GRCGYC 5 cut(s) 13, 799, 1108, 1781, 3830
BssSI CACGAG 1 cut(s) 672
BssT1I CCWWGG 8 cut(s) 8, 189, 633, 871, 1531, 1874, 3405, 4058
Bst2BI CACGAG 1 cut(s) 672
Bst2UI CCWGG 4 cut(s) 293, 1055, 1710, 2844
Bst4CI ACNGT 5 cut(s) 369, 2329, 3039, 3452, 3569
BstACI GRCGYC 5 cut(s) 13, 799, 1108, 1781, 3830
BstAPI GCANNNNNTGC 2 cut(s) 3215, 4417
BstBAI YACGTR 1 cut(s) 213
BstBI TTCGAA 2 cut(s) 1501, 3080
BstC8I GCNNGC 9 cut(s) 324, 328, 1134, 1206, 2148, 2462, 2667, 2943, 3866
BstDSI CCRYGG 6 cut(s) 17, 633, 871, 1874, 2040, 3405
BstENI CCTNNNNNAGG 1 cut(s) 4062
BstFNI CGCG 3 cut(s) 620, 1122, 2042
BstH2I RGCGCY 4 cut(s) 16, 1784, 2377, 3833
BstHHI GCGC 6 cut(s) 15, 349, 1124, 1783, 2376, 3832
BstMAI GTCTC 7 cut(s) 802, 1293, 1317, 1875, 1915, 2692, 2779
BstMCI CGRYCG 1 cut(s) 4315
BstNI CCWGG 4 cut(s) 293, 1055, 1710, 2844
BstNSI RCATGY 4 cut(s) 1136, 1310, 1870, 2150
BstSCI CCNGG 9 cut(s) 291, 842, 1053, 1225, 1708, 1756, 2842, 3223, 4181
BstSFI CTRYAG 4 cut(s) 1668, 1743, 1829, 2946
BstSLI GKGCMC 2 cut(s) 562, 1054
BstUI CGCG 3 cut(s) 620, 1122, 2042
BstV2I GAAGAC 4 cut(s) 1017, 1826, 2323, 2741
BstX2I RGATCY 3 cut(s) 2053, 2281, 4012
BstYI RGATCY 3 cut(s) 2053, 2281, 4012
Bsu15I ATCGAT 1 cut(s) 4156
Bsu36I CCTNAGG 1 cut(s) 1698
BsuI GTATCC 4 cut(s) 1624, 4179, 4216, 4437
BsuRI GGCC 9 cut(s) 638, 670, 1861, 3007, 3271, 3335, 3909, 4116, 4163
BsuTUI ATCGAT 1 cut(s) 4156
BtgI CCRYGG 6 cut(s) 17, 633, 871, 1874, 2040, 3405
BtgZI GCGATG 1 cut(s) 395
BtrI CACGTC 1 cut(s) 2564
BtsI GCAGTG 4 cut(s) 1066, 2307, 3666, 3863
BveI ACCTGC 2 cut(s) 820, 2351
Cac8I GCNNGC 9 cut(s) 324, 328, 1134, 1206, 2148, 2462, 2667, 2943, 3866
CciI TCATGA 3 cut(s) 949, 2058, 2653
CfoI GCGC 6 cut(s) 15, 349, 1124, 1783, 2376, 3832
Cfr10I RCCGGY 1 cut(s) 4297
Cfr13I GGNCC 9 cut(s) 194, 534, 686, 698, 990, 3394, 3598, 3908, 4115
Cfr42I CCGCGG 1 cut(s) 2043
ClaI ATCGAT 1 cut(s) 4156
CseI GACGC 1 cut(s) 626
Csp6I GTAC 4 cut(s) 1158, 1182, 3432, 3648
CspAI ACCGGT 1 cut(s) 4297
CviQI GTAC 4 cut(s) 1158, 1182, 3432, 3648
DinI GGCGCC 3 cut(s) 14, 1782, 3831
DraI TTTAAA 1 cut(s) 3136
DraIII CACNNNGTG 1 cut(s) 566
EaeI YGGCCR 3 cut(s) 636, 668, 3269
EciI GGCGGA 1 cut(s) 3548
Ecl136II GAGCTC 3 cut(s) 122, 3538, 3629
Eco130I CCWWGG 8 cut(s) 8, 189, 633, 871, 1531, 1874, 3405, 4058
Eco24I GRGCYC 3 cut(s) 124, 3540, 3631
Eco31I GGTCTC 1 cut(s) 802
Eco47I GGWCC 7 cut(s) 194, 534, 686, 698, 990, 3394, 3598
Eco53kI GAGCTC 3 cut(s) 122, 3538, 3629
Eco57I CTGAAG 6 cut(s) 714, 943, 1011, 3336, 3617, 3646
Eco81I CCTNAGG 1 cut(s) 1698
EcoICRI GAGCTC 3 cut(s) 122, 3538, 3629
EcoNI CCTNNNNNAGG 1 cut(s) 4062
EcoO109I RGGNCCY 2 cut(s) 194, 3598
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 4 cut(s) 291, 1053, 1708, 2842
EcoT14I CCWWGG 8 cut(s) 8, 189, 633, 871, 1531, 1874, 3405, 4058
EcoT22I ATGCAT 1 cut(s) 1931
EcoT38I GRGCYC 3 cut(s) 124, 3540, 3631
EgeI GGCGCC 3 cut(s) 14, 1782, 3831
EheI GGCGCC 3 cut(s) 14, 1782, 3831
ErhI CCWWGG 8 cut(s) 8, 189, 633, 871, 1531, 1874, 3405, 4058
Esp3I CGTCTC 1 cut(s) 1293
FalI AAGNNNNNCTT 2 cut(s) 2474, 2506
FaqI GGGAC 9 cut(s) 87, 207, 672, 892, 1095, 1973, 3136, 3407, 3611
FauI CCCGC 4 cut(s) 1080, 2047, 3021, 4356
FauNDI CATATG 1 cut(s) 3211
FriOI GRGCYC 3 cut(s) 124, 3540, 3631
GlaI GCGC 6 cut(s) 14, 348, 1123, 1782, 2375, 3831
GsaI CCCAGC 1 cut(s) 1147
GsuI CTGGAG 6 cut(s) 186, 1053, 1149, 1782, 2681, 4155
HaeII RGCGCY 4 cut(s) 16, 1784, 2377, 3833
HaeIII GGCC 9 cut(s) 638, 670, 1861, 3007, 3271, 3335, 3909, 4116, 4163
HgaI GACGC 1 cut(s) 626
HhaI GCGC 6 cut(s) 15, 349, 1124, 1783, 2376, 3832
Hin1I GRCGYC 5 cut(s) 13, 799, 1108, 1781, 3830
Hin6I GCGC 6 cut(s) 13, 347, 1122, 1781, 2374, 3830
HinP1I GCGC 6 cut(s) 13, 347, 1122, 1781, 2374, 3830
HincII GTYRAC 1 cut(s) 2421
HindII GTYRAC 1 cut(s) 2421
HindIII AAGCTT 2 cut(s) 234, 4094
HphI GGTGA 8 cut(s) 283, 1337, 1342, 2023, 3394, 3469, 3472, 4043
Hpy166II GTNNAC 6 cut(s) 220, 1106, 2125, 2421, 2763, 4145
Hpy8I GTNNAC 6 cut(s) 220, 1106, 2125, 2421, 2763, 4145
HpyAV CCTTC 9 cut(s) 50, 262, 455, 786, 1370, 2261, 3247, 3360, 4245
HpyCH4III ACNGT 5 cut(s) 369, 2329, 3039, 3452, 3569
HpyCH4IV ACGT 4 cut(s) 212, 799, 1108, 2563
HpySE526I ACGT 4 cut(s) 212, 799, 1108, 2563
Hsp92I GRCGYC 5 cut(s) 13, 799, 1108, 1781, 3830
HspAI GCGC 6 cut(s) 13, 347, 1122, 1781, 2374, 3830
KasI GGCGCC 3 cut(s) 12, 1780, 3829
KflI GGGWCCC 2 cut(s) 194, 3598
Kpn2I TCCGGA 2 cut(s) 1684, 2518
KpnI GGTACC 2 cut(s) 1185, 3651
KspI CCGCGG 1 cut(s) 2043
LguI GCTCTTC 1 cut(s) 3636
LweI GCATC 8 cut(s) 193, 334, 2004, 2164, 2542, 2574, 2857, 4407
MaeII ACGT 4 cut(s) 212, 799, 1108, 2563
MaeIII GTNAC 5 cut(s) 283, 800, 1983, 2329, 3925
MfeI CAATTG 1 cut(s) 2621
MflI RGATCY 3 cut(s) 2053, 2281, 4012
MhlI GDGCHC 9 cut(s) 124, 248, 562, 667, 1054, 1885, 2503, 3540, 3631
MlsI TGGCCA 2 cut(s) 638, 3271
MluNI TGGCCA 2 cut(s) 638, 3271
Mly113I GGCGCC 3 cut(s) 13, 1781, 3830
MlyI GAGTC 8 cut(s) 370, 653, 1111, 1816, 2755, 3118, 3468, 3954
MmeI TCCRAC 1 cut(s) 3857
Mox20I TGGCCA 2 cut(s) 638, 3271
Mph1103I ATGCAT 1 cut(s) 1931
MroI TCCGGA 2 cut(s) 1684, 2518
MroXI GAANNNNTTC 4 cut(s) 898, 1662, 1752, 4299
MscI TGGCCA 2 cut(s) 638, 3271
MslI CAYNNNNRTG 5 cut(s) 1272, 2327, 3236, 3404, 3824
Msp20I TGGCCA 2 cut(s) 638, 3271
MspA1I CMGCKG 7 cut(s) 743, 1031, 1087, 1571, 1802, 2042, 2672
MspR9I CCNGG 9 cut(s) 293, 844, 1055, 1227, 1710, 1758, 2844, 3225, 4183
MunI CAATTG 1 cut(s) 2621
Mva1269I GAATGC 1 cut(s) 1237
MvaI CCWGG 4 cut(s) 293, 1055, 1710, 2844
MvnI CGCG 3 cut(s) 620, 1122, 2042
NarI GGCGCC 3 cut(s) 13, 1781, 3830
NciI CCSGG 5 cut(s) 844, 1227, 1758, 3225, 4183
NcoI CCATGG 4 cut(s) 633, 871, 1874, 3405
NdeI CATATG 1 cut(s) 3211
NmeAIII GCCGAG 1 cut(s) 646
NmuCI GTSAC 3 cut(s) 800, 1983, 2329
NsiI ATGCAT 1 cut(s) 1931
NspI RCATGY 4 cut(s) 1136, 1310, 1870, 2150
NspV TTCGAA 2 cut(s) 1501, 3080
OliI CACNNNNGTG 1 cut(s) 2327
PaeI GCATGC 2 cut(s) 1136, 2150
PagI TCATGA 3 cut(s) 949, 2058, 2653
PasI CCCWGGG 1 cut(s) 1054
PciSI GCTCTTC 1 cut(s) 3636
PcsI WCGNNNNNNNCGW 2 cut(s) 25, 3601
PctI GAATGC 1 cut(s) 1237
PdmI GAANNNNTTC 4 cut(s) 898, 1662, 1752, 4299
PfeI GAWTC 8 cut(s) 299, 486, 1948, 2338, 3047, 3578, 4306, 4400
PflFI GACNNNGTC 1 cut(s) 2565
PflMI CCANNNNNTGG 1 cut(s) 2293
PfoI TCCNGGA 5 cut(s) 291, 1225, 1756, 2842, 4181
PinAI ACCGGT 1 cut(s) 4297
PleI GAGTC 8 cut(s) 370, 652, 1111, 1816, 2754, 3118, 3468, 3954
PluTI GGCGCC 3 cut(s) 16, 1784, 3833
PpsI GAGTC 8 cut(s) 370, 652, 1111, 1816, 2754, 3118, 3468, 3954
Ppu21I YACGTR 1 cut(s) 213
PpuMI RGGWCCY 2 cut(s) 194, 3598
PshBI ATTAAT 1 cut(s) 1383
Psp124BI GAGCTC 3 cut(s) 124, 3540, 3631
Psp5II RGGWCCY 2 cut(s) 194, 3598
Psp6I CCWGG 4 cut(s) 291, 1053, 1708, 2842
PspFI CCCAGC 1 cut(s) 1143
PspGI CCWGG 4 cut(s) 291, 1053, 1708, 2842
PspPI GGNCC 9 cut(s) 194, 534, 686, 698, 990, 3394, 3598, 3908, 4115
PspPPI RGGWCCY 2 cut(s) 194, 3598
PstI CTGCAG 1 cut(s) 1833
PsuI RGATCY 3 cut(s) 2053, 2281, 4012
PsyI GACNNNGTC 1 cut(s) 2565
PvuII CAGCTG 2 cut(s) 743, 1031
RsaI GTAC 4 cut(s) 1159, 1183, 3433, 3649
RsaNI GTAC 4 cut(s) 1158, 1182, 3432, 3648
RseI CAYNNNNRTG 5 cut(s) 1272, 2327, 3236, 3404, 3824
SacI GAGCTC 3 cut(s) 124, 3540, 3631
SacII CCGCGG 1 cut(s) 2043
SapI GCTCTTC 1 cut(s) 3636
Sau96I GGNCC 9 cut(s) 194, 534, 686, 698, 990, 3394, 3598, 3908, 4115
SchI GAGTC 8 cut(s) 370, 653, 1111, 1816, 2755, 3118, 3468, 3954
ScrFI CCNGG 9 cut(s) 293, 844, 1055, 1227, 1710, 1758, 2844, 3225, 4183
SduI GDGCHC 9 cut(s) 124, 248, 562, 667, 1054, 1885, 2503, 3540, 3631
SfaNI GCATC 8 cut(s) 193, 334, 2004, 2164, 2542, 2574, 2857, 4407
SfcI CTRYAG 4 cut(s) 1668, 1743, 1829, 2946
SfoI GGCGCC 3 cut(s) 14, 1782, 3831
Sfr303I CCGCGG 1 cut(s) 2043
SfuI TTCGAA 2 cut(s) 1501, 3080
SgrBI CCGCGG 1 cut(s) 2043
SinI GGWCC 7 cut(s) 194, 534, 686, 698, 990, 3394, 3598
SmiMI CAYNNNNRTG 5 cut(s) 1272, 2327, 3236, 3404, 3824
SmlI CTYRAG 4 cut(s) 2128, 2687, 3362, 3962
SmoI CTYRAG 4 cut(s) 2128, 2687, 3362, 3962
SphI GCATGC 2 cut(s) 1136, 2150
SspDI GGCGCC 3 cut(s) 12, 1780, 3829
SspI AATATT 2 cut(s) 395, 2169
SstI GAGCTC 3 cut(s) 124, 3540, 3631
StyD4I CCNGG 9 cut(s) 291, 842, 1053, 1225, 1708, 1756, 2842, 3223, 4181
StyI CCWWGG 8 cut(s) 8, 189, 633, 871, 1531, 1874, 3405, 4058
TaaI ACNGT 5 cut(s) 369, 2329, 3039, 3452, 3569
TaiI ACGT 4 cut(s) 215, 802, 1111, 2566
TaqII GACCGA 3 cut(s) 1057, 1971, 4329
TauI GCSGC 3 cut(s) 2045, 2632, 3092
TfiI GAWTC 8 cut(s) 299, 486, 1948, 2338, 3047, 3578, 4306, 4400
TseFI GTSAC 3 cut(s) 800, 1983, 2329
Tsp45I GTSAC 3 cut(s) 800, 1983, 2329
TspGWI ACGGA 3 cut(s) 2348, 3992, 4419
Tth111I GACNNNGTC 1 cut(s) 2565
Van91I CCANNNNNTGG 1 cut(s) 2293
VpaK11BI GGWCC 7 cut(s) 194, 534, 686, 698, 990, 3394, 3598
VspI ATTAAT 1 cut(s) 1383
XagI CCTNNNNNAGG 1 cut(s) 4062
XapI RAATTY 4 cut(s) 420, 3617, 3788, 4019
XbaI TCTAGA 1 cut(s) 2558
XceI RCATGY 4 cut(s) 1136, 1310, 1870, 2150
XcmI CCANNNNNNNNNTGG 2 cut(s) 646, 3387
XmaJI CCTAGG 1 cut(s) 8
XmnI GAANNNNTTC 4 cut(s) 898, 1662, 1752, 4299
ZraI GACGTC 2 cut(s) 800, 1109
Zsp2I ATGCAT 1 cut(s) 1931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.