FvH4_3g28781

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000094
Physical Location & Seq
Forward (+)
21776671 .. 21779931
3261 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28781.t1

Sequence Viewer

Length: 2835 bp
ATGCCTCCTTGGCGCCCATGGCAACCCCGTGTGGCTACTTCGACCAATGCCGATGAGGGCAATGAGGTCAGGGGACTAGTTGATGATATTGGGAATATGCTAAGGGATGTCATGGATCGAGCTCCACAACCTCATACAGTGAAGAGGAGAGAAGTTTATGAGGCTAGGGCAAGAGAGTTCAAAGGTGCCAAGGGACCCTTTGATGCTTATACTTGGGTGGACAAAATGGAAAAGGCTTTTGCGAGCACAGATTTGCCAGAAGAAAGGAAGGTGAAGATGGCAGTAACGTTCCTGGATGATTCAGCACATTACTGGTGGTCGCTCGCTAGCAGGAATGTTGAGGATGCGCTGAATATATCGTGGGAGCAGTTTAAGACGCTTTTCTTAGGGCAATATTTCAGTCCTGCCCACCGCAGCAGAATTCAGTCGGATTTCCTGAATATGAAGAAGAGGGATGATGAGGGTGTTATAGAGTTCCAGGAGAGATTCACTTCCCTGAGCTATCATGTGTCATATTTGGTTCCTGATGAGAGGACTAGGATGGAGATGTTCATTGGGGCACTTGGTGGAGTGTTTGCAGATAAGATGACGGGTGTTTATTACCCAACTTTCTCTGACGCTGTTCATGCAGCCATGGCCATTGAGTCTATGGGGATTTATAGTGCTCGGCCACGAGATTTCGGTGGCCCCAGTCAGGGTCCATCCAAGAAAGCTGCTTCATCATCCGCTTCAGGTTCATCAGCTGGTAGTGGCAGTAGTGGGGGATCAGGTTCTAATTCTCGGTTCAGGGTTAGAGGACGTCATAGGAGACCTGCTAGGAGCCAGTTGGGTAGGCAGCAGTCTGGGCAGTATGGTTCGAGTGGCAGTTTCCATGGTGGGTCATCCGGTAGCCAGACTTTTTCATATGGGCAGCAGCAGCAGTTTTCTGGGTGCTTTGAGTGTGGTGGTCAGGACCACTTCAAGAGAGATTGCCCATTGTTGGCTCAGAGGACCACTCCCACCCCTACTCAGCCTGTTGGTCAGTCTTCAGCTGGAGGCTCTAGTAGTGGTGCCCAGGGCAGTGCTTCGGTCAGAGGTGGCTCTCAACGGGGAAGTGGTCAGCGTGGAAGTCCCATGACTCGCGCTAGACTGCATGCTATGACCCAACAGGAGGGTCGTACTTCTCCAGATGTCATCATTGGTACGTTATTAATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTCGATTCGCGCCCTCCATGCAAATGTGCCATCATCGTCTCTTCCAGGCGAGTGGCATGTGTCTCTACCCTCCGGCATTTTTAGCTCATGTGGTGGATACAAGTATGGGAGTTGTGGGATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGAGATAGACTTCTCTATAGAATTACTTCCCGGAACTATGTCTATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGATTCAATTACAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCCAGTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGGAAGTTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCAGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTATCATCAGTTGCGGATCCGAGAGGGTGACATAGCCAAGACTGCTTTCCGCTCACGTTATGGTCATTATGAATTTGTGGTGATGCCTTTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATATCTTGATCGTTTCGTGATCGTATTCATAGATGATATCTTGGTTTACTCAAGAAGTGAGAAGGAGCATGCCAAGCATCTAAGAATAATATTGCGGACTTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTAGATAAAGTGGGGTTTTTGGGTCATGTGATTTCGGCAGAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGTTTAGCAGGTTATTATCGACGCTTTGTGAAAGATTTTTCAAAGATTGCTGCTCCTCTCACAAAGTTGACCAGGAAGGGGGTTAAGTTTGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTATGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCATACTCATGATCTGGAGCTTGCAGCGGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAAAGAGAGGTTAATATGAGACAGAGAAGGTGGATGGAGTTAATCAATGATTATGATTACACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGCTACAAGAGTGGATTTGTCAGTGGATGAGAAGAGATGGGACTCTATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

945

Amino Acids

106.12

Weight (kDa)

9.2

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 92 - 187 7.9e-14 Retrotransposon gag protein
RVP_2 PF08284 372 - 431 2.2e-11 Retroviral aspartyl protease
RVT_1 PF00078 539 - 699 6.3e-36 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 762 - 856 2.4e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 788 - 886 1.3e-32 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 802
Acc36I ACCTGC 2 cut(s) 820, 2189
AccB1I GGYRCC 6 cut(s) 12, 185, 1049, 1498, 1631, 1733
AccB7I CCANNNNNTGG 1 cut(s) 2131
AccBSI CCGCTC 1 cut(s) 1821
AccII CGCG 3 cut(s) 1122, 1262, 1880
AccIII TCCGGA 2 cut(s) 1402, 2356
AclI AACGTT 1 cut(s) 287
AclWI GGATC 8 cut(s) 123, 772, 1217, 1780, 1793, 1899, 2114, 2127
AcoI YGGCCR 2 cut(s) 636, 668
AcsI RAATTY 2 cut(s) 420, 1841
AcuI CTGAAG 2 cut(s) 714, 1011
AcyI GRCGYC 3 cut(s) 13, 799, 1499
AdeI CACNNNGTG 1 cut(s) 566
AfaI GTAC 2 cut(s) 1159, 1183
AfiI CCNNNNNNNGG 7 cut(s) 694, 695, 979, 1150, 2131, 2268, 2474
AhlI ACTAGT 1 cut(s) 76
AjiI CACGTC 1 cut(s) 2402
AjnI CCWGG 7 cut(s) 291, 477, 1053, 1296, 1426, 2261, 2680
AjuI GAANNNNNNNTTGG 2 cut(s) 1799, 1831
AleI CACNNNNGTG 1 cut(s) 2165
Alw21I GWGCWC 5 cut(s) 124, 248, 667, 1603, 2341
Alw26I GTCTC 7 cut(s) 802, 1295, 1319, 1593, 1633, 2530, 2617
AlwI GGATC 8 cut(s) 123, 772, 1217, 1780, 1793, 1899, 2114, 2127
Aor13HI TCCGGA 2 cut(s) 1402, 2356
AoxI GGCC 4 cut(s) 636, 668, 685, 1577
ApoI RAATTY 2 cut(s) 420, 1841
AseI ATTAAT 1 cut(s) 1190
Asp700I GAANNNNTTC 2 cut(s) 1380, 1470
AspLEI GCGC 5 cut(s) 15, 349, 1124, 1264, 1501
AspS9I GGNCC 5 cut(s) 194, 686, 698, 952, 990
AsuC2I CCSGG 2 cut(s) 1227, 1476
AsuHPI GGTGA 3 cut(s) 283, 1808, 1861
AsuNHI GCTAGC 1 cut(s) 326
AvaII GGWCC 4 cut(s) 194, 698, 952, 990
AxyI CCTNAGG 1 cut(s) 1416
BaeGI GKGCMC 2 cut(s) 562, 1054
BalI TGGCCA 1 cut(s) 638
BamHI GGATCC 2 cut(s) 1785, 2119
BanI GGYRCC 6 cut(s) 12, 185, 1049, 1498, 1631, 1733
BanII GRGCYC 1 cut(s) 124
BauI CACGAG 1 cut(s) 672
BbsI GAAGAC 3 cut(s) 1017, 2161, 2579
Bbv12I GWGCWC 5 cut(s) 124, 248, 667, 1603, 2341
BccI CCATC 8 cut(s) 271, 535, 709, 1290, 1622, 2632, 2743, 2811
BcgI CGANNNNNNTGC 2 cut(s) 2414, 2448
BciT130I CCWGG 7 cut(s) 293, 479, 1055, 1298, 1428, 2263, 2682
BciVI GTATCC 1 cut(s) 1342
BclI TGATCA 1 cut(s) 1720
BcnI CCSGG 2 cut(s) 1227, 1476
BcoDI GTCTC 7 cut(s) 802, 1295, 1319, 1593, 1633, 2530, 2617
BcuI ACTAGT 1 cut(s) 76
BfmI CTRYAG 2 cut(s) 1386, 1461
BfoI RGCGCY 2 cut(s) 16, 1502
BfuAI ACCTGC 2 cut(s) 820, 2189
BfuI GTATCC 1 cut(s) 1342
BglI GCCNNNNNGGC 1 cut(s) 10
Bme1390I CCNGG 9 cut(s) 293, 479, 1055, 1227, 1298, 1428, 1476, 2263, 2682
Bme18I GGWCC 4 cut(s) 194, 698, 952, 990
BmgBI CACGTC 1 cut(s) 2402
BmgT120I GGNCC 5 cut(s) 194, 686, 698, 952, 990
BmrFI CCNGG 9 cut(s) 293, 479, 1055, 1227, 1298, 1428, 1476, 2263, 2682
BmrI ACTGGG 1 cut(s) 684
BmsI GCATC 7 cut(s) 193, 334, 1842, 2002, 2380, 2412, 2695
BmtI GCTAGC 1 cut(s) 330
BmuI ACTGGG 1 cut(s) 684
BpiI GAAGAC 3 cut(s) 1017, 2161, 2579
BplI GAGNNNNNCTC 2 cut(s) 979, 1011
BpmI CTGGAG 5 cut(s) 1053, 1149, 1500, 1587, 2519
Bpu10I CCTNAGC 2 cut(s) 101, 497
BpuEI CTTGAG 2 cut(s) 1951, 2510
BpuMI CCSGG 2 cut(s) 1227, 1476
Bsa29I ATCGAT 1 cut(s) 1707
BsaHI GRCGYC 3 cut(s) 13, 799, 1499
BsaI GGTCTC 1 cut(s) 802
BsaJI CCNNGG 9 cut(s) 8, 17, 189, 633, 871, 1053, 1054, 1592, 1878
BsaWI WCCGGW 3 cut(s) 884, 1402, 2356
BsaXI ACNNNNNCTCC 6 cut(s) 2100, 2130, 2323, 2353, 2361, 2391
Bsc4I CCNNNNNNNGG 7 cut(s) 694, 695, 979, 1150, 2131, 2268, 2474
Bse1I ACTGG 4 cut(s) 317, 690, 823, 1604
Bse21I CCTNAGG 1 cut(s) 1416
Bse3DI GCAATG 1 cut(s) 67
BseAI TCCGGA 2 cut(s) 1402, 2356
BseBI CCWGG 7 cut(s) 293, 479, 1055, 1298, 1428, 2263, 2682
BseCI ATCGAT 1 cut(s) 1707
BseDI CCNNGG 9 cut(s) 8, 17, 189, 633, 871, 1053, 1054, 1592, 1878
BseLI CCNNNNNNNGG 7 cut(s) 694, 695, 979, 1150, 2131, 2268, 2474
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 6 cut(s) 488, 998, 1022, 1407, 1508, 1715
BseNI ACTGG 4 cut(s) 317, 690, 823, 1604
BseRI GAGGAG 3 cut(s) 160, 1433, 2235
BseSI GKGCMC 2 cut(s) 562, 1054
Bsh1236I CGCG 3 cut(s) 1122, 1262, 1880
BshFI GGCC 4 cut(s) 638, 670, 687, 1579
BshNI GGYRCC 6 cut(s) 12, 185, 1049, 1498, 1631, 1733
BshVI ATCGAT 1 cut(s) 1707
BsiHKAI GWGCWC 5 cut(s) 124, 248, 667, 1603, 2341
BsiSI CCGG 6 cut(s) 885, 1227, 1325, 1403, 1476, 2357
BslFI GGGAC 3 cut(s) 87, 207, 1095
BslI CCNNNNNNNGG 7 cut(s) 694, 695, 979, 1150, 2131, 2268, 2474
BsmAI GTCTC 7 cut(s) 802, 1295, 1319, 1593, 1633, 2530, 2617
BsmBI CGTCTC 1 cut(s) 1295
BsmFI GGGAC 3 cut(s) 87, 207, 1095
BsmI GAATGC 1 cut(s) 1237
BsnI GGCC 4 cut(s) 638, 670, 687, 1579
Bso31I GGTCTC 1 cut(s) 802
Bsp1286I GDGCHC 7 cut(s) 124, 248, 562, 667, 1054, 1603, 2341
Bsp13I TCCGGA 2 cut(s) 1402, 2356
Bsp19I CCATGG 4 cut(s) 17, 633, 871, 1592
BspANI GGCC 4 cut(s) 638, 670, 687, 1579
BspCNI CTCAG 6 cut(s) 489, 997, 1021, 1408, 1507, 1714
BspDI ATCGAT 1 cut(s) 1707
BspEI TCCGGA 2 cut(s) 1402, 2356
BspFNI CGCG 3 cut(s) 1122, 1262, 1880
BspHI TCATGA 2 cut(s) 1896, 2491
BspMI ACCTGC 2 cut(s) 820, 2189
BspOI GCTAGC 1 cut(s) 330
BspPI GGATC 8 cut(s) 123, 772, 1217, 1780, 1793, 1899, 2114, 2127
BspT107I GGYRCC 6 cut(s) 12, 185, 1049, 1498, 1631, 1733
BspTNI GGTCTC 1 cut(s) 802
BsrBI CCGCTC 1 cut(s) 1821
BsrDI GCAATG 1 cut(s) 67
BsrI ACTGG 4 cut(s) 317, 690, 823, 1604
BssECI CCNNGG 9 cut(s) 8, 17, 189, 633, 871, 1053, 1054, 1592, 1878
BssNI GRCGYC 3 cut(s) 13, 799, 1499
BssSI CACGAG 1 cut(s) 672
BssT1I CCWWGG 6 cut(s) 8, 17, 189, 633, 871, 1592
Bst2BI CACGAG 1 cut(s) 672
Bst2UI CCWGG 7 cut(s) 293, 479, 1055, 1298, 1428, 2263, 2682
Bst4CI ACNGT 3 cut(s) 139, 1678, 2167
Bst6I CTCTTC 4 cut(s) 137, 443, 1298, 2807
BstACI GRCGYC 3 cut(s) 13, 799, 1499
BstC8I GCNNGC 9 cut(s) 244, 324, 328, 1134, 1206, 1986, 2300, 2505, 2781
BstDSI CCRYGG 5 cut(s) 17, 633, 871, 1592, 1878
BstFNI CGCG 3 cut(s) 1122, 1262, 1880
BstH2I RGCGCY 2 cut(s) 16, 1502
BstHHI GCGC 5 cut(s) 15, 349, 1124, 1264, 1501
BstMAI GTCTC 7 cut(s) 802, 1295, 1319, 1593, 1633, 2530, 2617
BstNI CCWGG 7 cut(s) 293, 479, 1055, 1298, 1428, 2263, 2682
BstNSI RCATGY 4 cut(s) 1136, 1312, 1588, 1988
BstSCI CCNGG 9 cut(s) 291, 477, 1053, 1225, 1296, 1426, 1474, 2261, 2680
BstSFI CTRYAG 2 cut(s) 1386, 1461
BstSLI GKGCMC 2 cut(s) 562, 1054
BstUI CGCG 3 cut(s) 1122, 1262, 1880
BstV2I GAAGAC 3 cut(s) 1017, 2161, 2579
BstX2I RGATCY 3 cut(s) 1785, 1891, 2119
BstXI CCANNNNNNTGG 1 cut(s) 1304
BstYI RGATCY 3 cut(s) 1785, 1891, 2119
Bsu15I ATCGAT 1 cut(s) 1707
Bsu36I CCTNAGG 1 cut(s) 1416
BsuI GTATCC 1 cut(s) 1342
BsuRI GGCC 4 cut(s) 638, 670, 687, 1579
BsuTUI ATCGAT 1 cut(s) 1707
BtgI CCRYGG 5 cut(s) 17, 633, 871, 1592, 1878
BtrI CACGTC 1 cut(s) 2402
BtsI GCAGTG 2 cut(s) 1066, 2145
BtsIMutI CAGTG 8 cut(s) 144, 1066, 1611, 1683, 2145, 2163, 2300, 2808
BveI ACCTGC 2 cut(s) 820, 2189
Cac8I GCNNGC 9 cut(s) 244, 324, 328, 1134, 1206, 1986, 2300, 2505, 2781
CciI TCATGA 2 cut(s) 1896, 2491
CfoI GCGC 5 cut(s) 15, 349, 1124, 1264, 1501
Cfr13I GGNCC 5 cut(s) 194, 686, 698, 952, 990
Cfr42I CCGCGG 1 cut(s) 1881
ClaI ATCGAT 1 cut(s) 1707
CseI GACGC 3 cut(s) 385, 626, 2220
Csp6I GTAC 2 cut(s) 1158, 1182
CviQI GTAC 2 cut(s) 1158, 1182
DinI GGCGCC 2 cut(s) 14, 1500
DraIII CACNNNGTG 1 cut(s) 566
EaeI YGGCCR 2 cut(s) 636, 668
Eam1104I CTCTTC 4 cut(s) 137, 443, 1298, 2807
EarI CTCTTC 4 cut(s) 137, 443, 1298, 2807
Ecl136II GAGCTC 1 cut(s) 122
Eco130I CCWWGG 6 cut(s) 8, 17, 189, 633, 871, 1592
Eco24I GRGCYC 1 cut(s) 124
Eco31I GGTCTC 1 cut(s) 802
Eco32I GATATC 1 cut(s) 1954
Eco47I GGWCC 4 cut(s) 194, 698, 952, 990
Eco53kI GAGCTC 1 cut(s) 122
Eco57I CTGAAG 2 cut(s) 714, 1011
Eco81I CCTNAGG 1 cut(s) 1416
EcoICRI GAGCTC 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 420
EcoRII CCWGG 7 cut(s) 291, 477, 1053, 1296, 1426, 2261, 2680
EcoRV GATATC 1 cut(s) 1954
EcoT14I CCWWGG 6 cut(s) 8, 17, 189, 633, 871, 1592
EcoT22I ATGCAT 1 cut(s) 1649
EcoT38I GRGCYC 1 cut(s) 124
EgeI GGCGCC 2 cut(s) 14, 1500
EheI GGCGCC 2 cut(s) 14, 1500
ErhI CCWWGG 6 cut(s) 8, 17, 189, 633, 871, 1592
Esp3I CGTCTC 1 cut(s) 1295
FalI AAGNNNNNCTT 4 cut(s) 182, 214, 2312, 2344
FaqI GGGAC 3 cut(s) 87, 207, 1095
FauI CCCGC 1 cut(s) 1885
FauNDI CATATG 1 cut(s) 904
FbaI TGATCA 1 cut(s) 1720
FriOI GRGCYC 1 cut(s) 124
GlaI GCGC 5 cut(s) 14, 348, 1123, 1263, 1500
GsuI CTGGAG 5 cut(s) 1053, 1149, 1500, 1587, 2519
HaeII RGCGCY 2 cut(s) 16, 1502
HaeIII GGCC 4 cut(s) 638, 670, 687, 1579
HapII CCGG 6 cut(s) 885, 1227, 1325, 1403, 1476, 2357
HgaI GACGC 3 cut(s) 385, 626, 2220
HhaI GCGC 5 cut(s) 15, 349, 1124, 1264, 1501
Hin1I GRCGYC 3 cut(s) 13, 799, 1499
Hin6I GCGC 5 cut(s) 13, 347, 1122, 1262, 1499
HinP1I GCGC 5 cut(s) 13, 347, 1122, 1262, 1499
HincII GTYRAC 1 cut(s) 2259
HindII GTYRAC 1 cut(s) 2259
HpaII CCGG 6 cut(s) 885, 1227, 1325, 1403, 1476, 2357
HphI GGTGA 3 cut(s) 283, 1808, 1861
Hpy166II GTNNAC 4 cut(s) 220, 1963, 2259, 2601
Hpy188I TCNGA 8 cut(s) 430, 616, 987, 1073, 1704, 1790, 2290, 2565
Hpy8I GTNNAC 4 cut(s) 220, 1963, 2259, 2601
Hpy99I CGWCG 1 cut(s) 2214
HpyAV CCTTC 5 cut(s) 262, 1972, 2099, 2260, 2625
HpyCH4III ACNGT 3 cut(s) 139, 1678, 2167
HpyCH4IV ACGT 5 cut(s) 287, 799, 1184, 1825, 2401
HpyCH4V TGCA 9 cut(s) 578, 629, 1132, 1273, 1442, 1647, 1874, 2425, 2507
HpySE526I ACGT 5 cut(s) 287, 799, 1184, 1825, 2401
Hsp92I GRCGYC 3 cut(s) 13, 799, 1499
HspAI GCGC 5 cut(s) 13, 347, 1122, 1262, 1499
KasI GGCGCC 2 cut(s) 12, 1498
KflI GGGWCCC 1 cut(s) 194
Kpn2I TCCGGA 2 cut(s) 1402, 2356
Ksp22I TGATCA 1 cut(s) 1720
KspI CCGCGG 1 cut(s) 1881
LweI GCATC 7 cut(s) 193, 334, 1842, 2002, 2380, 2412, 2695
MaeII ACGT 5 cut(s) 287, 799, 1184, 1825, 2401
MaeIII GTNAC 4 cut(s) 283, 1672, 1796, 2167
MbiI CCGCTC 1 cut(s) 1821
MfeI CAATTG 1 cut(s) 2459
MflI RGATCY 3 cut(s) 1785, 1891, 2119
MhlI GDGCHC 7 cut(s) 124, 248, 562, 667, 1054, 1603, 2341
MlsI TGGCCA 1 cut(s) 638
MluNI TGGCCA 1 cut(s) 638
Mly113I GGCGCC 2 cut(s) 13, 1499
MlyI GAGTC 4 cut(s) 653, 1111, 2593, 2816
MmeI TCCRAC 1 cut(s) 408
Mox20I TGGCCA 1 cut(s) 638
Mph1103I ATGCAT 1 cut(s) 1649
MroI TCCGGA 2 cut(s) 1402, 2356
MroXI GAANNNNTTC 2 cut(s) 1380, 1470
MscI TGGCCA 1 cut(s) 638
MseI TTAA 8 cut(s) 372, 1190, 1217, 1617, 2274, 2616, 2645, 2833
MslI CAYNNNNRTG 3 cut(s) 1274, 2165, 2490
Msp20I TGGCCA 1 cut(s) 638
MspA1I CMGCKG 5 cut(s) 743, 1031, 1520, 1880, 2510
MspI CCGG 6 cut(s) 885, 1227, 1325, 1403, 1476, 2357
MspR9I CCNGG 9 cut(s) 293, 479, 1055, 1227, 1298, 1428, 1476, 2263, 2682
MunI CAATTG 1 cut(s) 2459
Mva1269I GAATGC 1 cut(s) 1237
MvaI CCWGG 7 cut(s) 293, 479, 1055, 1298, 1428, 2263, 2682
MvnI CGCG 3 cut(s) 1122, 1262, 1880
NarI GGCGCC 2 cut(s) 13, 1499
NciI CCSGG 2 cut(s) 1227, 1476
NcoI CCATGG 4 cut(s) 17, 633, 871, 1592
NdeI CATATG 1 cut(s) 904
NheI GCTAGC 1 cut(s) 326
NmeAIII GCCGAG 1 cut(s) 646
NmuCI GTSAC 3 cut(s) 1672, 1796, 2167
NsiI ATGCAT 1 cut(s) 1649
NspI RCATGY 4 cut(s) 1136, 1312, 1588, 1988
OliI CACNNNNGTG 1 cut(s) 2165
PaeI GCATGC 2 cut(s) 1136, 1988
PagI TCATGA 2 cut(s) 1896, 2491
PasI CCCWGGG 1 cut(s) 1054
PctI GAATGC 1 cut(s) 1237
PdmI GAANNNNTTC 2 cut(s) 1380, 1470
PfeI GAWTC 6 cut(s) 299, 486, 1257, 1540, 1666, 2176
PflFI GACNNNGTC 1 cut(s) 2403
PflMI CCANNNNNTGG 1 cut(s) 2131
PfoI TCCNGGA 5 cut(s) 291, 477, 1225, 1474, 2680
PleI GAGTC 4 cut(s) 652, 1111, 2592, 2816
PluTI GGCGCC 2 cut(s) 16, 1502
PpsI GAGTC 4 cut(s) 652, 1111, 2592, 2816
PpuMI RGGWCCY 1 cut(s) 194
PshBI ATTAAT 1 cut(s) 1190
Psp124BI GAGCTC 1 cut(s) 124
Psp1406I AACGTT 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 194
Psp6I CCWGG 7 cut(s) 291, 477, 1053, 1296, 1426, 2261, 2680
PspGI CCWGG 7 cut(s) 291, 477, 1053, 1296, 1426, 2261, 2680
PspPI GGNCC 5 cut(s) 194, 686, 698, 952, 990
PspPPI RGGWCCY 1 cut(s) 194
PsuI RGATCY 3 cut(s) 1785, 1891, 2119
PsyI GACNNNGTC 1 cut(s) 2403
PvuII CAGCTG 2 cut(s) 743, 1031
RsaI GTAC 2 cut(s) 1159, 1183
RsaNI GTAC 2 cut(s) 1158, 1182
RseI CAYNNNNRTG 3 cut(s) 1274, 2165, 2490
SacI GAGCTC 1 cut(s) 124
SacII CCGCGG 1 cut(s) 1881
SaqAI TTAA 8 cut(s) 372, 1190, 1217, 1617, 2274, 2616, 2645, 2833
Sau96I GGNCC 5 cut(s) 194, 686, 698, 952, 990
SchI GAGTC 4 cut(s) 653, 1111, 2593, 2816
ScrFI CCNGG 9 cut(s) 293, 479, 1055, 1227, 1298, 1428, 1476, 2263, 2682
SduI GDGCHC 7 cut(s) 124, 248, 562, 667, 1054, 1603, 2341
SfaNI GCATC 7 cut(s) 193, 334, 1842, 2002, 2380, 2412, 2695
SfcI CTRYAG 2 cut(s) 1386, 1461
SfoI GGCGCC 2 cut(s) 14, 1500
Sfr303I CCGCGG 1 cut(s) 1881
SgrBI CCGCGG 1 cut(s) 1881
SinI GGWCC 4 cut(s) 194, 698, 952, 990
SmiMI CAYNNNNRTG 3 cut(s) 1274, 2165, 2490
SmlI CTYRAG 2 cut(s) 1966, 2525
SmoI CTYRAG 2 cut(s) 1966, 2525
SpeI ACTAGT 1 cut(s) 76
SphI GCATGC 2 cut(s) 1136, 1988
SspDI GGCGCC 2 cut(s) 12, 1498
SspI AATATT 2 cut(s) 395, 2007
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 9 cut(s) 291, 477, 1053, 1225, 1296, 1426, 1474, 2261, 2680
StyI CCWWGG 6 cut(s) 8, 17, 189, 633, 871, 1592
TaaI ACNGT 3 cut(s) 139, 1678, 2167
TaiI ACGT 5 cut(s) 290, 802, 1187, 1828, 2404
TaqI TCGA 9 cut(s) 41, 118, 857, 1255, 1707, 2144, 2209, 2434, 2716
TaqII GACCGA 1 cut(s) 1057
TauI GCSGC 2 cut(s) 1883, 2470
TfiI GAWTC 6 cut(s) 299, 486, 1257, 1540, 1666, 2176
Tru1I TTAA 8 cut(s) 372, 1190, 1217, 1617, 2274, 2616, 2645, 2833
Tru9I TTAA 8 cut(s) 372, 1190, 1217, 1617, 2274, 2616, 2645, 2833
TscAI CASTG 8 cut(s) 144, 1066, 1611, 1683, 2145, 2170, 2300, 2808
TseFI GTSAC 3 cut(s) 1672, 1796, 2167
Tsp45I GTSAC 3 cut(s) 1672, 1796, 2167
TspGWI ACGGA 2 cut(s) 1683, 2186
TspRI CASTG 8 cut(s) 144, 1066, 1611, 1683, 2145, 2170, 2300, 2808
Tth111I GACNNNGTC 1 cut(s) 2403
Van91I CCANNNNNTGG 1 cut(s) 2131
VpaK11BI GGWCC 4 cut(s) 194, 698, 952, 990
VspI ATTAAT 1 cut(s) 1190
XapI RAATTY 2 cut(s) 420, 1841
XbaI TCTAGA 1 cut(s) 2396
XceI RCATGY 4 cut(s) 1136, 1312, 1588, 1988
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
XmnI GAANNNNTTC 2 cut(s) 1380, 1470
ZraI GACGTC 1 cut(s) 800
Zsp2I ATGCAT 1 cut(s) 1649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.