RchiOBHm_Chr3g0496881

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000094
Physical Location & Seq
Reverse (-)
48240877 .. 48245889
5013 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45918

Sequence Viewer

Length: 2448 bp
ATGCCGTTTGGGTTGACTAATGCTCCTGCAGCTTTTATGGACCTCATGAATAGAGTGTTCTGTCCTTACCTTGATCGTTTTGTGATTGTGTTCATTGATGATATCTTGGTGTATTCAAAGGACAATAGTCAACATGCCAAACATCTAAGAATTGTATTGCGAACTTTGAGGGAGGCCCAGTTATATGCGAAATTCAATAAATGTGAATTTTGGCTGAATAGTATTGGATTCTTGGGTCATGTTGTATCTGCAGAAGGTATTAGTGTGGACCCTCAGAAGGTAGTAGCGGTGCTAAATTGGGAAAGACCTACCACAGTGACAGAGATACGTAGTTTCTTGGGATTGGCAGGTTATTACCGGAGATTCGTGCAAGATTTCTCAAAGATTGCAACTCCTCTTACTAGGTTGACTAGAAAGGGTGTGAAGTTTGTTTGGTCAGAAGAGTGTGAGCAAAGTTTTCAAGAACTCAAGGGGCGTTTAACTAGTGCTCCGGTCCTAGTTTTGCCAGATGATAGTGGGGAGTATGTGGTATATAGTGATGCCTCGAGGCAAGGCTTGGGTTGTGTTCTGATGCAACATGGAAATGTGATTGCCTACGCCTCTAGACAATTGAAGCCGCATGAGTTGAATTATCCGACACATGACCTTGAATTAGCTGCGGTAGTACTTGCACTTAAACTTTGGAGGCATTATTTATATGGAGCTCGGTGTCAAATCTTTACGGATCATAAGAGTCTCCAATATTTGCTCACACAAAAAGAGATTAATTTGAGGCAAAGAAGATGGTTGGAGTTGATTAAGGATTATGATTGCACGATTGAGTATCATCCAGGAAGGGCTAATGTAGTAGCTGACGCTCTTAGTAGGAAGACATATCCTTCCCTGTTGCCCTCCCCTTCCTTGTCGCATATGAGAACAGTTCGGGTTCCACTTCTTTATGAATTGCGAGCTACAGGAGTTAGTTTGGAAGGGACTGATGAATTTGCAGCCTTAATAGCCAGCTTCCATGTGAGGCCAATCCTTATTGATAAAGTACGAGAGGCACAGCTACATGATGAAGCTCTACAAGAAGTAAGAGAGGCAGTAGAGAATGGAGCTAGAGAAGACTTCATTGTTAGAGGGGATGGAGCTTTGATGTTTGGGAATAGAATTTGTGTACCCAAACAGGATGATCTTAAACAGGAGATACTAGAGGAGGCTCATAGTTCTCCTTATGCCATGCATCCTGGTGGAACCAAAATGTACCGAACTCTCAAGGAATACTACTGGTGGTCTAACATGAAGAGGGAAATTGCAGATTATGTACGAAGATGTCTAGTGTGTCAACAAGTGAAGGCAGAAAGACAAAAGCCCTCAGGTTTATTACAGCCCTTACCTATACCAGAGTGGAAGTGGGAACACATTACTATGGACTTTGTATCAGGACTACCACGTAGTCGGAATGGTCATGATAGCATTTGGGTAATTGTGGACCGACTTACTAAGTCCGCACATTTCCTACCTGTCAGCAAGACTTATAAAATGGATAAATATGCAGAGCTATACTTGAATGAGATAGTGAGACTTCATGGCACACCCGTTTCTATTACTTCCGATCGTGATCCTCGCTTCACTTCAAAGTTTTGGAGTGAGCTGATGGAGGCTTTGGGCACTCAGTCTCAATTTAGTACTGCATTTCATCCGCAAACAGATGGACAGACGGAAAGGACCATTCAAACACTGGAAGACATGTTGAGAGCTTGTGTTTTACAATTCAAAGGGAATTGGGACAATCATGTCGCATTGATAGAGTTTGCTTATAATAACAGTTATCACTCCAGTATTGGCATGGCTCCTTATGAAGCCCTTTATGGCAAACAGTGTCGTACCCCTTTATGTTGGAATGAAGCAGGAGAAAGGAAGCTCATTGGTCCAGAATTAGTACGAGTTACGACTGAAAAGGTCAACCTAATCAAGGAGAAACTTAAAACGGCTCAGAGTAGACAGAAGAGTTATGCTGATAACAGAAGAAAAGATTTGGAGTTTCAAGTGGGTGACTGGGTGTTCTTGAAGCTGTCTCCTTGGAAGGGCATTATAAGATTTGGGAAACGAGGGAAACTTAGCCCTCGATATATCGGACCATATGAGATCACGGAGCGGATTGGTGCTGTTGCTTATCGTTTGGCACTACCTCCGAGACTATCTAGAGTACATGATGTCTTCCATGTCTCTATGCTTCGCAAGTATATTGCTGATTCCTCTCATGTTCTTCAAGAACAACCTATCCGGTTGAGAGAAAATTTGACATATGAAGAACAACCGGTTCAAATACTTGATAGGAGGGAGCAGATACTCAGAAACAAAACAATACCCTTGGTCAAGGTGCTTTGGAGTAATCACATGGTGGAGGAAGCTACTTGGGAACCAGAGGAGCAAATGAGGAAGCAGTATCCTCACCTTTTTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

815

Amino Acids

94.47

Weight (kDa)

8.94

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 1 - 81 1.3e-17 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 145 - 238 2.2e-30 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 171 - 269 3e-31 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 390 - 446 6.5e-20 Integrase zinc binding domain
SH3_Tf2-1 PF24626 678 - 742 1.2e-27 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 1518, 1800, 2075
AasI GACNNNNNNGTC 1 cut(s) 1775
AbsI CCTCGAGG 1 cut(s) 544
Acc36I ACCTGC 1 cut(s) 338
AccBSI CCGCTC 1 cut(s) 2137
AccI GTMKAC 1 cut(s) 1981
AciI CCGC 6 cut(s) 287, 617, 659, 1488, 1682, 2137
AclWI GGATC 2 cut(s) 732, 1595
AcsI RAATTY 5 cut(s) 191, 206, 980, 1149, 2278
AdeI CACNNNGTG 1 cut(s) 2383
AfaI GTAC 9 cut(s) 666, 1035, 1158, 1244, 1305, 1669, 1867, 1923, 2190
AfiI CCNNNNNNNGG 3 cut(s) 277, 1954, 2066
AflIII ACRYGT 1 cut(s) 1728
AgeI ACCGGT 1 cut(s) 2299
AhlI ACTAGT 1 cut(s) 482
AjnI CCWGG 2 cut(s) 829, 1225
AloI GAACNNNNNNTCC 2 cut(s) 2247, 2279
Alw21I GWGCWC 2 cut(s) 490, 706
Alw26I GTCTC 6 cut(s) 740, 1555, 1662, 2061, 2170, 2212
AlwI GGATC 2 cut(s) 732, 1595
Ama87I CYCGRG 1 cut(s) 544
AoxI GGCC 2 cut(s) 174, 1013
ApeKI GCWGC 3 cut(s) 29, 656, 986
ApoI RAATTY 5 cut(s) 191, 206, 980, 1149, 2278
AseI ATTAAT 1 cut(s) 765
AsiGI ACCGGT 1 cut(s) 2299
AspS9I GGNCC 8 cut(s) 40, 175, 268, 493, 1471, 1707, 1910, 2117
AsuHPI GGTGA 2 cut(s) 2045, 2426
AvaI CYCGRG 1 cut(s) 544
AvaII GGWCC 7 cut(s) 40, 268, 493, 1471, 1707, 1910, 2117
AxyI CCTNAGG 1 cut(s) 1354
BaeGI GKGCMC 1 cut(s) 1652
BanII GRGCYC 1 cut(s) 706
BbsI GAAGAC 4 cut(s) 875, 1110, 1731, 2191
Bbv12I GWGCWC 2 cut(s) 490, 706
BbvI GCAGC 3 cut(s) 41, 643, 998
BccI CCATC 4 cut(s) 777, 1118, 1630, 1685
BceAI ACGGC 1 cut(s) 1986
BciT130I CCWGG 2 cut(s) 831, 1227
BciVI GTATCC 1 cut(s) 2439
BcoDI GTCTC 6 cut(s) 740, 1555, 1662, 2061, 2170, 2212
BcuI ACTAGT 1 cut(s) 482
BfmI CTRYAG 3 cut(s) 27, 249, 951
BfuAI ACCTGC 1 cut(s) 338
BfuI GTATCC 1 cut(s) 2439
BisI GCNGC 4 cut(s) 30, 617, 657, 987
BlsI GCNGC 4 cut(s) 31, 618, 658, 988
BmcAI AGTACT 2 cut(s) 666, 1669
Bme1390I CCNGG 2 cut(s) 831, 1227
Bme18I GGWCC 7 cut(s) 40, 268, 493, 1471, 1707, 1910, 2117
BmeT110I CYCGRG 1 cut(s) 544
BmgT120I GGNCC 8 cut(s) 40, 175, 268, 493, 1471, 1707, 1910, 2117
BmiI GGNNCC 5 cut(s) 270, 927, 1234, 1833, 2403
BmrFI CCNGG 2 cut(s) 831, 1227
BmrI ACTGGG 2 cut(s) 172, 2047
BmsI GCATC 3 cut(s) 529, 561, 1231
BmuI ACTGGG 2 cut(s) 172, 2047
BoxI GACNNNNGTC 1 cut(s) 126
BpiI GAAGAC 4 cut(s) 875, 1110, 1731, 2191
BpmI CTGGAG 1 cut(s) 1801
BpuEI CTTGAG 2 cut(s) 452, 1238
BsaAI YACGTR 2 cut(s) 329, 1433
BsaBI GATNNNNATC 1 cut(s) 1599
BsaJI CCNNGG 2 cut(s) 2060, 2352
BsaWI WCCGGW 4 cut(s) 357, 490, 2265, 2299
BsaXI ACNNNNNCTCC 6 cut(s) 7, 37, 164, 194, 472, 502
Bsc4I CCNNNNNNNGG 3 cut(s) 277, 1954, 2066
Bse118I RCCGGY 1 cut(s) 2299
Bse1I ACTGG 5 cut(s) 178, 1271, 1725, 1818, 2042
Bse21I CCTNAGG 1 cut(s) 1354
Bse8I GATNNNNATC 1 cut(s) 1599
BseBI CCWGG 2 cut(s) 831, 1227
BseDI CCNNGG 2 cut(s) 2060, 2352
BseGI GGATG 5 cut(s) 826, 1129, 1174, 1222, 1678
BseJI GATNNNNATC 1 cut(s) 1599
BseLI CCNNNNNNNGG 3 cut(s) 277, 1954, 2066
BseMII CTCAG 5 cut(s) 287, 1368, 1667, 1988, 2347
BseNI ACTGG 5 cut(s) 178, 1271, 1725, 1818, 2042
BseRI GAGGAG 3 cut(s) 384, 1208, 2423
BseSI GKGCMC 1 cut(s) 1652
BseXI GCAGC 3 cut(s) 41, 643, 998
Bsh1285I CGRYCG 1 cut(s) 1597
BshFI GGCC 2 cut(s) 176, 1015
BshTI ACCGGT 1 cut(s) 2299
BsiEI CGRYCG 1 cut(s) 1597
BsiHKAI GWGCWC 2 cut(s) 490, 706
BsiHKCI CYCGRG 1 cut(s) 544
BsiSI CCGG 4 cut(s) 358, 491, 2266, 2300
BslFI GGGAC 2 cut(s) 985, 1781
BslI CCNNNNNNNGG 3 cut(s) 277, 1954, 2066
BsmAI GTCTC 6 cut(s) 740, 1555, 1662, 2061, 2170, 2212
BsmFI GGGAC 2 cut(s) 985, 1781
BsnI GGCC 2 cut(s) 176, 1015
BsoBI CYCGRG 1 cut(s) 544
Bsp1286I GDGCHC 3 cut(s) 490, 706, 1652
Bsp143I GATC 6 cut(s) 73, 724, 1171, 1594, 1600, 2127
BspACI CCGC 6 cut(s) 287, 617, 659, 1488, 1682, 2137
BspANI GGCC 2 cut(s) 176, 1015
BspCNI CTCAG 5 cut(s) 286, 1367, 1666, 1987, 2346
BspHI TCATGA 2 cut(s) 45, 1447
BspLI GGNNCC 5 cut(s) 270, 927, 1234, 1833, 2403
BspMAI CTGCAG 2 cut(s) 31, 253
BspMI ACCTGC 1 cut(s) 338
BspPI GGATC 2 cut(s) 732, 1595
BsrBI CCGCTC 1 cut(s) 2137
BsrFI RCCGGY 1 cut(s) 2299
BsrI ACTGG 5 cut(s) 178, 1271, 1725, 1818, 2042
BssAI RCCGGY 1 cut(s) 2299
BssECI CCNNGG 2 cut(s) 2060, 2352
BssMI GATC 6 cut(s) 73, 724, 1171, 1594, 1600, 2127
BssT1I CCWWGG 2 cut(s) 2060, 2352
Bst2UI CCWGG 2 cut(s) 831, 1227
Bst4CI ACNGT 4 cut(s) 316, 919, 1808, 1860
Bst6I CTCTTC 3 cut(s) 435, 1277, 1982
BstBAI YACGTR 2 cut(s) 329, 1433
BstC8I GCNNGC 2 cut(s) 948, 1000
BstDEI CTNAG 9 cut(s) 146, 273, 860, 1354, 1482, 1653, 1974, 2099, 2333
BstENI CCTNNNNNAGG 1 cut(s) 1952
BstF5I GGATG 5 cut(s) 826, 1129, 1174, 1222, 1678
BstKTI GATC 6 cut(s) 76, 727, 1174, 1597, 1603, 2130
BstMAI GTCTC 6 cut(s) 740, 1555, 1662, 2061, 2170, 2212
BstMBI GATC 6 cut(s) 73, 724, 1171, 1594, 1600, 2127
BstMCI CGRYCG 1 cut(s) 1597
BstMWI GCNNNNNNNGC 2 cut(s) 29, 995
BstNI CCWGG 2 cut(s) 831, 1227
BstNSI RCATGY 2 cut(s) 137, 1732
BstPAI GACNNNNGTC 1 cut(s) 126
BstSCI CCNGG 2 cut(s) 829, 1225
BstSFI CTRYAG 3 cut(s) 27, 249, 951
BstSLI GKGCMC 1 cut(s) 1652
BstSNI TACGTA 1 cut(s) 329
BstV1I GCAGC 3 cut(s) 41, 643, 998
BstV2I GAAGAC 4 cut(s) 875, 1110, 1731, 2191
Bsu36I CCTNAGG 1 cut(s) 1354
BsuI GTATCC 1 cut(s) 2439
BsuRI GGCC 2 cut(s) 176, 1015
BtsCI GGATG 5 cut(s) 826, 1129, 1174, 1222, 1678
BtsIMutI CAGTG 3 cut(s) 321, 1718, 1865
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 2 cut(s) 948, 1000
CciI TCATGA 2 cut(s) 45, 1447
Cfr10I RCCGGY 1 cut(s) 2299
Cfr13I GGNCC 8 cut(s) 40, 175, 268, 493, 1471, 1707, 1910, 2117
CseI GACGC 1 cut(s) 863
Csp6I GTAC 9 cut(s) 665, 1034, 1157, 1243, 1304, 1668, 1866, 1922, 2189
CspAI ACCGGT 1 cut(s) 2299
CviQI GTAC 9 cut(s) 665, 1034, 1157, 1243, 1304, 1668, 1866, 1922, 2189
DdeI CTNAG 9 cut(s) 146, 273, 860, 1354, 1482, 1653, 1974, 2099, 2333
DpnI GATC 6 cut(s) 75, 726, 1173, 1596, 1602, 2129
DpnII GATC 6 cut(s) 73, 724, 1171, 1594, 1600, 2127
DraIII CACNNNGTG 1 cut(s) 2383
DrdI GACNNNNNNGTC 1 cut(s) 1775
DseDI GACNNNNNNGTC 1 cut(s) 1775
Eam1104I CTCTTC 3 cut(s) 435, 1277, 1982
EarI CTCTTC 3 cut(s) 435, 1277, 1982
Ecl136II GAGCTC 1 cut(s) 704
Eco105I TACGTA 1 cut(s) 329
Eco130I CCWWGG 2 cut(s) 2060, 2352
Eco24I GRGCYC 1 cut(s) 706
Eco32I GATATC 1 cut(s) 103
Eco47I GGWCC 7 cut(s) 40, 268, 493, 1471, 1707, 1910, 2117
Eco53kI GAGCTC 1 cut(s) 704
Eco81I CCTNAGG 1 cut(s) 1354
Eco88I CYCGRG 1 cut(s) 544
EcoICRI GAGCTC 1 cut(s) 704
EcoNI CCTNNNNNAGG 1 cut(s) 1952
EcoRII CCWGG 2 cut(s) 829, 1225
EcoRV GATATC 1 cut(s) 103
EcoT14I CCWWGG 2 cut(s) 2060, 2352
EcoT22I ATGCAT 1 cut(s) 1224
EcoT38I GRGCYC 1 cut(s) 706
ErhI CCWWGG 2 cut(s) 2060, 2352
FaqI GGGAC 2 cut(s) 985, 1781
FauNDI CATATG 3 cut(s) 909, 2122, 2287
FblI GTMKAC 1 cut(s) 1981
Fnu4HI GCNGC 4 cut(s) 30, 617, 657, 987
FokI GGATG 5 cut(s) 813, 1136, 1181, 1209, 1665
FriOI GRGCYC 1 cut(s) 706
Fsp4HI GCNGC 4 cut(s) 30, 617, 657, 987
GluI GCNGC 4 cut(s) 30, 617, 657, 987
GsuI CTGGAG 1 cut(s) 1801
HaeIII GGCC 2 cut(s) 176, 1015
HapII CCGG 4 cut(s) 358, 491, 2266, 2300
HgaI GACGC 1 cut(s) 863
HincII GTYRAC 5 cut(s) 15, 131, 408, 1325, 1945
HindII GTYRAC 5 cut(s) 15, 131, 408, 1325, 1945
HinfI GANTC 4 cut(s) 228, 363, 733, 2234
HpaII CCGG 4 cut(s) 358, 491, 2266, 2300
HphI GGTGA 2 cut(s) 2045, 2426
Hpy166II GTNNAC 9 cut(s) 15, 131, 268, 408, 1157, 1325, 1471, 1945, 1982
Hpy8I GTNNAC 9 cut(s) 15, 131, 268, 408, 1157, 1325, 1471, 1945, 1982
HpyAV CCTTC 8 cut(s) 248, 271, 828, 888, 906, 962, 1327, 2059
HpyCH4III ACNGT 4 cut(s) 316, 919, 1808, 1860
HpyCH4IV ACGT 2 cut(s) 328, 1432
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 995
HpyF3I CTNAG 9 cut(s) 146, 273, 860, 1354, 1482, 1653, 1974, 2099, 2333
HpySE526I ACGT 2 cut(s) 328, 1432
Kzo9I GATC 6 cut(s) 73, 724, 1171, 1594, 1600, 2127
LmnI GCTCC 9 cut(s) 28, 493, 701, 1094, 1127, 1837, 2134, 2323, 2410
Lsp1109I GCAGC 3 cut(s) 41, 643, 998
LweI GCATC 3 cut(s) 529, 561, 1231
MaeII ACGT 2 cut(s) 328, 1432
MaeIII GTNAC 3 cut(s) 316, 1927, 2033
MalI GATC 6 cut(s) 75, 726, 1173, 1596, 1602, 2129
MbiI CCGCTC 1 cut(s) 2137
MboI GATC 6 cut(s) 73, 724, 1171, 1594, 1600, 2127
MfeI CAATTG 1 cut(s) 608
MhlI GDGCHC 3 cut(s) 490, 706, 1652
MlyI GAGTC 1 cut(s) 742
MmeI TCCRAC 4 cut(s) 659, 768, 1418, 1859
Mph1103I ATGCAT 1 cut(s) 1224
MseI TTAA 7 cut(s) 479, 675, 765, 798, 992, 1176, 1965
MslI CAYNNNNRTG 3 cut(s) 582, 1227, 1406
MspI CCGG 4 cut(s) 358, 491, 2266, 2300
MspR9I CCNGG 2 cut(s) 831, 1227
MunI CAATTG 1 cut(s) 608
MvaI CCWGG 2 cut(s) 831, 1227
MwoI GCNNNNNNNGC 2 cut(s) 29, 995
NdeI CATATG 3 cut(s) 909, 2122, 2287
NdeII GATC 6 cut(s) 73, 724, 1171, 1594, 1600, 2127
NlaIV GGNNCC 5 cut(s) 270, 927, 1234, 1833, 2403
NmuCI GTSAC 2 cut(s) 316, 2033
NsiI ATGCAT 1 cut(s) 1224
NspI RCATGY 2 cut(s) 137, 1732
PaeR7I CTCGAG 1 cut(s) 544
PagI TCATGA 2 cut(s) 45, 1447
PciI ACATGT 1 cut(s) 1728
PfeI GAWTC 3 cut(s) 228, 363, 2234
PfoI TCCNGGA 1 cut(s) 829
PinAI ACCGGT 1 cut(s) 2299
PkrI GCNGC 4 cut(s) 31, 618, 658, 988
Ple19I CGATCG 1 cut(s) 1597
PleI GAGTC 1 cut(s) 741
PpsI GAGTC 1 cut(s) 741
Ppu21I YACGTR 2 cut(s) 329, 1433
PscI ACATGT 1 cut(s) 1728
PshAI GACNNNNGTC 1 cut(s) 126
PshBI ATTAAT 1 cut(s) 765
PsiI TTATAA 3 cut(s) 1518, 1800, 2075
Psp124BI GAGCTC 1 cut(s) 706
Psp6I CCWGG 2 cut(s) 829, 1225
PspGI CCWGG 2 cut(s) 829, 1225
PspN4I GGNNCC 5 cut(s) 270, 927, 1234, 1833, 2403
PspPI GGNCC 8 cut(s) 40, 175, 268, 493, 1471, 1707, 1910, 2117
PspXI VCTCGAGB 1 cut(s) 544
PstI CTGCAG 2 cut(s) 31, 253
PvuI CGATCG 1 cut(s) 1597
RsaI GTAC 9 cut(s) 666, 1035, 1158, 1244, 1305, 1669, 1867, 1923, 2190
RsaNI GTAC 9 cut(s) 665, 1034, 1157, 1243, 1304, 1668, 1866, 1922, 2189
RseI CAYNNNNRTG 3 cut(s) 582, 1227, 1406
SacI GAGCTC 1 cut(s) 706
SaqAI TTAA 7 cut(s) 479, 675, 765, 798, 992, 1176, 1965
SatI GCNGC 4 cut(s) 30, 617, 657, 987
Sau3AI GATC 6 cut(s) 73, 724, 1171, 1594, 1600, 2127
Sau96I GGNCC 8 cut(s) 40, 175, 268, 493, 1471, 1707, 1910, 2117
ScaI AGTACT 2 cut(s) 666, 1669
SchI GAGTC 1 cut(s) 742
ScrFI CCNGG 2 cut(s) 831, 1227
SduI GDGCHC 3 cut(s) 490, 706, 1652
SfaNI GCATC 3 cut(s) 529, 561, 1231
SfcI CTRYAG 3 cut(s) 27, 249, 951
Sfr274I CTCGAG 1 cut(s) 544
SinI GGWCC 7 cut(s) 40, 268, 493, 1471, 1707, 1910, 2117
SlaI CTCGAG 1 cut(s) 544
SmiMI CAYNNNNRTG 3 cut(s) 582, 1227, 1406
SmlI CTYRAG 3 cut(s) 467, 544, 1253
SmoI CTYRAG 3 cut(s) 467, 544, 1253
SnaBI TACGTA 1 cut(s) 329
SpeI ACTAGT 1 cut(s) 482
SsiI CCGC 6 cut(s) 287, 617, 659, 1488, 1682, 2137
SspI AATATT 1 cut(s) 743
SstI GAGCTC 1 cut(s) 706
StyD4I CCNGG 2 cut(s) 829, 1225
StyI CCWWGG 2 cut(s) 2060, 2352
TaaI ACNGT 4 cut(s) 316, 919, 1808, 1860
TaiI ACGT 2 cut(s) 331, 1435
TaqI TCGA 2 cut(s) 545, 2107
TaqII GACCGA 1 cut(s) 1488
TatI WGTACW 3 cut(s) 664, 1667, 2188
TauI GCSGC 1 cut(s) 619
TfiI GAWTC 3 cut(s) 228, 363, 2234
Tru1I TTAA 7 cut(s) 479, 675, 765, 798, 992, 1176, 1965
Tru9I TTAA 7 cut(s) 479, 675, 765, 798, 992, 1176, 1965
TscAI CASTG 3 cut(s) 321, 1725, 1865
TseFI GTSAC 2 cut(s) 316, 2033
TseI GCWGC 3 cut(s) 29, 656, 986
Tsp45I GTSAC 2 cut(s) 316, 2033
TspGWI ACGGA 3 cut(s) 737, 1715, 2147
TspRI CASTG 3 cut(s) 321, 1725, 1865
VpaK11BI GGWCC 7 cut(s) 40, 268, 493, 1471, 1707, 1910, 2117
VspI ATTAAT 1 cut(s) 765
XagI CCTNNNNNAGG 1 cut(s) 1952
XapI RAATTY 5 cut(s) 191, 206, 980, 1149, 2278
XbaI TCTAGA 2 cut(s) 602, 2183
XceI RCATGY 2 cut(s) 137, 1732
XcmI CCANNNNNNNNNTGG 3 cut(s) 1389, 1717, 1825
XhoI CTCGAG 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 1981
ZrmI AGTACT 2 cut(s) 666, 1669
Zsp2I ATGCAT 1 cut(s) 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.