transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SH3_Tf2-1 | PF24626 | 168 - 228 | 6.4e-25 | Tf2-1-like, SH3 domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 283 |
| AccBSI | CCGCTC | 1 cut(s) | 268 |
| AccII | CGCG | 2 cut(s) | 77, 162 |
| AciI | CCGC | 2 cut(s) | 75, 268 |
| AclI | AACGTT | 1 cut(s) | 30 |
| AclWI | GGATC | 3 cut(s) | 686, 760, 876 |
| AfaI | GTAC | 4 cut(s) | 648, 683, 762, 789 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 283, 441, 523, 524 |
| AflIII | ACRYGT | 1 cut(s) | 700 |
| AgsI | TTSAA | 3 cut(s) | 35, 488, 845 |
| AjnI | CCWGG | 1 cut(s) | 91 |
| AluBI | AGCT | 4 cut(s) | 65, 407, 713, 851 |
| AluI | AGCT | 4 cut(s) | 65, 407, 713, 851 |
| Alw26I | GTCTC | 2 cut(s) | 7, 670 |
| AlwI | GGATC | 3 cut(s) | 686, 760, 876 |
| Ama87I | CYCGRG | 1 cut(s) | 140 |
| AoxI | GGCC | 1 cut(s) | 342 |
| AspS9I | GGNCC | 3 cut(s) | 429, 473, 575 |
| AvaI | CYCGRG | 1 cut(s) | 140 |
| AvaII | GGWCC | 3 cut(s) | 429, 473, 575 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 744, 776 |
| BccI | CCATC | 3 cut(s) | 248, 249, 343 |
| BciT130I | CCWGG | 1 cut(s) | 93 |
| BciVI | GTATCC | 1 cut(s) | 897 |
| BcoDI | GTCTC | 2 cut(s) | 7, 670 |
| BfuI | GTATCC | 1 cut(s) | 897 |
| BglII | AGATCT | 1 cut(s) | 736 |
| BmcAI | AGTACT | 1 cut(s) | 789 |
| Bme1390I | CCNGG | 1 cut(s) | 93 |
| Bme18I | GGWCC | 3 cut(s) | 429, 473, 575 |
| BmeT110I | CYCGRG | 1 cut(s) | 140 |
| BmgT120I | GGNCC | 3 cut(s) | 429, 473, 575 |
| BmiI | GGNNCC | 3 cut(s) | 396, 431, 861 |
| BmrFI | CCNGG | 1 cut(s) | 93 |
| BmsI | GCATC | 2 cut(s) | 97, 154 |
| BpuEI | CTTGAG | 1 cut(s) | 627 |
| BsaBI | GATNNNNATC | 1 cut(s) | 175 |
| BsaJI | CCNNGG | 2 cut(s) | 518, 563 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 283, 441, 523, 524 |
| Bse1I | ACTGG | 1 cut(s) | 758 |
| Bse8I | GATNNNNATC | 1 cut(s) | 175 |
| BseBI | CCWGG | 1 cut(s) | 93 |
| BseDI | CCNNGG | 2 cut(s) | 518, 563 |
| BseGI | GGATG | 3 cut(s) | 88, 241, 451 |
| BseJI | GATNNNNATC | 1 cut(s) | 175 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 283, 441, 523, 524 |
| BseMII | CTCAG | 2 cut(s) | 255, 468 |
| BseNI | ACTGG | 1 cut(s) | 758 |
| Bsh1236I | CGCG | 2 cut(s) | 77, 162 |
| BshFI | GGCC | 1 cut(s) | 344 |
| BsiHKCI | CYCGRG | 1 cut(s) | 140 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 283, 441, 523, 524 |
| BsmAI | GTCTC | 2 cut(s) | 7, 670 |
| BsnI | GGCC | 1 cut(s) | 344 |
| BsoBI | CYCGRG | 1 cut(s) | 140 |
| Bsp143I | GATC | 6 cut(s) | 157, 691, 736, 765, 772, 868 |
| Bsp68I | TCGCGA | 1 cut(s) | 162 |
| BspACI | CCGC | 2 cut(s) | 75, 268 |
| BspANI | GGCC | 1 cut(s) | 344 |
| BspCNI | CTCAG | 2 cut(s) | 256, 469 |
| BspFNI | CGCG | 2 cut(s) | 77, 162 |
| BspLI | GGNNCC | 3 cut(s) | 396, 431, 861 |
| BspPI | GGATC | 3 cut(s) | 686, 760, 876 |
| BsrBI | CCGCTC | 1 cut(s) | 268 |
| BsrI | ACTGG | 1 cut(s) | 758 |
| BssECI | CCNNGG | 2 cut(s) | 518, 563 |
| BssMI | GATC | 6 cut(s) | 157, 691, 736, 765, 772, 868 |
| BssT1I | CCWWGG | 1 cut(s) | 518 |
| Bst2UI | CCWGG | 1 cut(s) | 93 |
| Bst4CI | ACNGT | 3 cut(s) | 371, 423, 885 |
| Bst6I | CTCTTC | 1 cut(s) | 5 |
| BstDEI | CTNAG | 3 cut(s) | 264, 477, 557 |
| BstF5I | GGATG | 3 cut(s) | 88, 241, 451 |
| BstFNI | CGCG | 2 cut(s) | 77, 162 |
| BstKTI | GATC | 6 cut(s) | 160, 694, 739, 768, 775, 871 |
| BstMAI | GTCTC | 2 cut(s) | 7, 670 |
| BstMBI | GATC | 6 cut(s) | 157, 691, 736, 765, 772, 868 |
| BstNI | CCWGG | 1 cut(s) | 93 |
| BstNSI | RCATGY | 1 cut(s) | 704 |
| BstSCI | CCNGG | 1 cut(s) | 91 |
| BstUI | CGCG | 2 cut(s) | 77, 162 |
| BstX2I | RGATCY | 2 cut(s) | 736, 765 |
| BstYI | RGATCY | 2 cut(s) | 736, 765 |
| BsuI | GTATCC | 1 cut(s) | 897 |
| BsuRI | GGCC | 1 cut(s) | 344 |
| BtgZI | GCGATG | 1 cut(s) | 177 |
| BtsCI | GGATG | 3 cut(s) | 88, 241, 451 |
| BtsI | GCAGTG | 1 cut(s) | 231 |
| BtsIMutI | CAGTG | 3 cut(s) | 231, 428, 687 |
| BtuMI | TCGCGA | 1 cut(s) | 162 |
| Cfr13I | GGNCC | 3 cut(s) | 429, 473, 575 |
| Csp6I | GTAC | 4 cut(s) | 647, 682, 761, 788 |
| CviAII | CATG | 5 cut(s) | 131, 650, 662, 670, 701 |
| CviJI | RGCY | 9 cut(s) | 65, 127, 302, 344, 395, 407, 623, 713, 851 |
| CviKI_1 | RGCY | 9 cut(s) | 65, 127, 302, 344, 395, 407, 623, 713, 851 |
| CviQI | GTAC | 4 cut(s) | 647, 682, 761, 788 |
| DdeI | CTNAG | 3 cut(s) | 264, 477, 557 |
| DpnI | GATC | 6 cut(s) | 159, 693, 738, 767, 774, 870 |
| DpnII | GATC | 6 cut(s) | 157, 691, 736, 765, 772, 868 |
| DraI | TTTAAA | 1 cut(s) | 319 |
| Eam1104I | CTCTTC | 1 cut(s) | 5 |
| EarI | CTCTTC | 1 cut(s) | 5 |
| Eco130I | CCWWGG | 1 cut(s) | 518 |
| Eco47I | GGWCC | 3 cut(s) | 429, 473, 575 |
| Eco88I | CYCGRG | 1 cut(s) | 140 |
| EcoO109I | RGGNCCY | 1 cut(s) | 429 |
| EcoRII | CCWGG | 1 cut(s) | 91 |
| EcoT14I | CCWWGG | 1 cut(s) | 518 |
| ErhI | CCWWGG | 1 cut(s) | 518 |
| FaeI | CATG | 5 cut(s) | 134, 653, 665, 673, 704 |
| FatI | CATG | 5 cut(s) | 130, 649, 661, 669, 700 |
| FauNDI | CATATG | 1 cut(s) | 745 |
| FokI | GGATG | 3 cut(s) | 75, 228, 458 |
| HaeIII | GGCC | 1 cut(s) | 344 |
| Hin1II | CATG | 5 cut(s) | 134, 653, 665, 673, 704 |
| HindIII | AAGCTT | 1 cut(s) | 405 |
| HinfI | GANTC | 3 cut(s) | 143, 171, 832 |
| Hpy166II | GTNNAC | 2 cut(s) | 112, 545 |
| Hpy188I | TCNGA | 4 cut(s) | 157, 265, 564, 794 |
| Hpy188III | TCNNGA | 5 cut(s) | 140, 161, 277, 476, 779 |
| Hpy8I | GTNNAC | 2 cut(s) | 112, 545 |
| Hpy99I | CGWCG | 1 cut(s) | 780 |
| HpyAV | CCTTC | 3 cut(s) | 187, 517, 705 |
| HpyCH4III | ACNGT | 3 cut(s) | 371, 423, 885 |
| HpyCH4IV | ACGT | 1 cut(s) | 30 |
| HpyCH4V | TGCA | 3 cut(s) | 88, 98, 359 |
| HpyF3I | CTNAG | 3 cut(s) | 264, 477, 557 |
| HpySE526I | ACGT | 1 cut(s) | 30 |
| Hsp92II | CATG | 5 cut(s) | 134, 653, 665, 673, 704 |
| Kzo9I | GATC | 6 cut(s) | 157, 691, 736, 765, 772, 868 |
| LmnI | GCTCC | 2 cut(s) | 400, 781 |
| LpnPI | CCDG | 8 cut(s) | 78, 98, 105, 290, 489, 723, 771, 876 |
| LweI | GCATC | 2 cut(s) | 97, 154 |
| MaeII | ACGT | 1 cut(s) | 30 |
| MaeIII | GTNAC | 2 cut(s) | 371, 705 |
| MalI | GATC | 6 cut(s) | 159, 693, 738, 767, 774, 870 |
| MbiI | CCGCTC | 1 cut(s) | 268 |
| MboI | GATC | 6 cut(s) | 157, 691, 736, 765, 772, 868 |
| MboII | GAAGA | 6 cut(s) | 22, 299, 746, 761, 764, 857 |
| MflI | RGATCY | 2 cut(s) | 736, 765 |
| MluCI | AATT | 5 cut(s) | 117, 218, 224, 314, 597 |
| MlyI | GAGTC | 1 cut(s) | 152 |
| MnlI | CCTC | 9 cut(s) | 183, 255, 291, 542, 558, 639, 822, 859, 870 |
| MseI | TTAA | 4 cut(s) | 42, 318, 507, 816 |
| MslI | CAYNNNNRTG | 1 cut(s) | 93 |
| MspR9I | CCNGG | 1 cut(s) | 93 |
| MvaI | CCWGG | 1 cut(s) | 93 |
| MvnI | CGCG | 2 cut(s) | 77, 162 |
| NdeI | CATATG | 1 cut(s) | 745 |
| NdeII | GATC | 6 cut(s) | 157, 691, 736, 765, 772, 868 |
| NlaIII | CATG | 5 cut(s) | 134, 653, 665, 673, 704 |
| NlaIV | GGNNCC | 3 cut(s) | 396, 431, 861 |
| NruI | TCGCGA | 1 cut(s) | 162 |
| NspI | RCATGY | 1 cut(s) | 704 |
| PciI | ACATGT | 1 cut(s) | 700 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 166 |
| PfeI | GAWTC | 2 cut(s) | 171, 832 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 283 |
| PleI | GAGTC | 1 cut(s) | 151 |
| PpsI | GAGTC | 1 cut(s) | 151 |
| PpuMI | RGGWCCY | 1 cut(s) | 429 |
| PscI | ACATGT | 1 cut(s) | 700 |
| Psp1406I | AACGTT | 1 cut(s) | 30 |
| Psp5II | RGGWCCY | 1 cut(s) | 429 |
| Psp6I | CCWGG | 1 cut(s) | 91 |
| PspGI | CCWGG | 1 cut(s) | 91 |
| PspN4I | GGNNCC | 3 cut(s) | 396, 431, 861 |
| PspPI | GGNCC | 3 cut(s) | 429, 473, 575 |
| PspPPI | RGGWCCY | 1 cut(s) | 429 |
| PsuI | RGATCY | 2 cut(s) | 736, 765 |
| RruI | TCGCGA | 1 cut(s) | 162 |
| RsaI | GTAC | 4 cut(s) | 648, 683, 762, 789 |
| RsaNI | GTAC | 4 cut(s) | 647, 682, 761, 788 |
| RseI | CAYNNNNRTG | 1 cut(s) | 93 |
| SaqAI | TTAA | 4 cut(s) | 42, 318, 507, 816 |
| Sau3AI | GATC | 6 cut(s) | 157, 691, 736, 765, 772, 868 |
| Sau96I | GGNCC | 3 cut(s) | 429, 473, 575 |
| ScaI | AGTACT | 1 cut(s) | 789 |
| SchI | GAGTC | 1 cut(s) | 152 |
| ScrFI | CCNGG | 1 cut(s) | 93 |
| SfaNI | GCATC | 2 cut(s) | 97, 154 |
| SinI | GGWCC | 3 cut(s) | 429, 473, 575 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 93 |
| SmlI | CTYRAG | 1 cut(s) | 642 |
| SmoI | CTYRAG | 1 cut(s) | 642 |
| Sse9I | AATT | 5 cut(s) | 117, 218, 224, 314, 597 |
| SsiI | CCGC | 2 cut(s) | 75, 268 |
| StyD4I | CCNGG | 1 cut(s) | 91 |
| StyI | CCWWGG | 1 cut(s) | 518 |
| TaaI | ACNGT | 3 cut(s) | 371, 423, 885 |
| TaiI | ACGT | 1 cut(s) | 33 |
| TaqI | TCGA | 2 cut(s) | 169, 380 |
| TasI | AATT | 5 cut(s) | 117, 218, 224, 314, 597 |
| TatI | WGTACW | 4 cut(s) | 646, 681, 760, 787 |
| TfiI | GAWTC | 2 cut(s) | 171, 832 |
| Tru1I | TTAA | 4 cut(s) | 42, 318, 507, 816 |
| Tru9I | TTAA | 4 cut(s) | 42, 318, 507, 816 |
| TscAI | CASTG | 3 cut(s) | 238, 428, 694 |
| TspDTI | ATGAA | 6 cut(s) | 75, 119, 188, 462, 762, 890 |
| TspRI | CASTG | 3 cut(s) | 238, 428, 694 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 283 |
| VpaK11BI | GGWCC | 3 cut(s) | 429, 473, 575 |
| XceI | RCATGY | 1 cut(s) | 704 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 383 |
| ZrmI | AGTACT | 1 cut(s) | 789 |