transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 1 - 82 | 2.5e-21 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 290 |
| AciI | CCGC | 2 cut(s) | 30, 128 |
| AfaI | GTAC | 1 cut(s) | 266 |
| AflIII | ACRYGT | 1 cut(s) | 261 |
| AgsI | TTSAA | 1 cut(s) | 160 |
| AluBI | AGCT | 1 cut(s) | 181 |
| AluI | AGCT | 1 cut(s) | 181 |
| Alw21I | GWGCWC | 1 cut(s) | 286 |
| Alw26I | GTCTC | 1 cut(s) | 286 |
| Alw44I | GTGCAC | 1 cut(s) | 282 |
| Ama87I | CYCGRG | 1 cut(s) | 269 |
| ApaLI | GTGCAC | 1 cut(s) | 282 |
| AsuC2I | CCSGG | 1 cut(s) | 53 |
| AsuHPI | GGTGA | 1 cut(s) | 269 |
| AvaI | CYCGRG | 1 cut(s) | 269 |
| BaeGI | GKGCMC | 2 cut(s) | 240, 286 |
| BbsI | GAAGAC | 1 cut(s) | 82 |
| Bbv12I | GWGCWC | 1 cut(s) | 286 |
| BcnI | CCSGG | 1 cut(s) | 53 |
| BcoDI | GTCTC | 1 cut(s) | 286 |
| BfaI | CTAG | 1 cut(s) | 328 |
| BisI | GCNGC | 1 cut(s) | 30 |
| BlsI | GCNGC | 1 cut(s) | 31 |
| Bme1390I | CCNGG | 1 cut(s) | 53 |
| BmeT110I | CYCGRG | 1 cut(s) | 269 |
| BmrFI | CCNGG | 1 cut(s) | 53 |
| BpiI | GAAGAC | 1 cut(s) | 82 |
| Bpu10I | CCTNAGC | 1 cut(s) | 252 |
| BpuMI | CCSGG | 1 cut(s) | 53 |
| BsaAI | YACGTR | 1 cut(s) | 264 |
| BsaJI | CCNNGG | 1 cut(s) | 270 |
| Bse1I | ACTGG | 1 cut(s) | 322 |
| BseDI | CCNNGG | 1 cut(s) | 270 |
| BseMII | CTCAG | 1 cut(s) | 266 |
| BseNI | ACTGG | 1 cut(s) | 322 |
| BseSI | GKGCMC | 2 cut(s) | 240, 286 |
| Bsh1236I | CGCG | 1 cut(s) | 290 |
| BsiHKAI | GWGCWC | 1 cut(s) | 286 |
| BsiHKCI | CYCGRG | 1 cut(s) | 269 |
| BsiSI | CCGG | 1 cut(s) | 52 |
| BsmAI | GTCTC | 1 cut(s) | 286 |
| BsmI | GAATGC | 1 cut(s) | 25 |
| BsoBI | CYCGRG | 1 cut(s) | 269 |
| Bsp1286I | GDGCHC | 2 cut(s) | 240, 286 |
| Bsp143I | GATC | 1 cut(s) | 217 |
| BspACI | CCGC | 2 cut(s) | 30, 128 |
| BspCNI | CTCAG | 1 cut(s) | 265 |
| BspFNI | CGCG | 1 cut(s) | 290 |
| BsrI | ACTGG | 1 cut(s) | 322 |
| BssECI | CCNNGG | 1 cut(s) | 270 |
| BssMI | GATC | 1 cut(s) | 217 |
| Bst6I | CTCTTC | 1 cut(s) | 155 |
| BstBAI | YACGTR | 1 cut(s) | 264 |
| BstC8I | GCNNGC | 1 cut(s) | 282 |
| BstDEI | CTNAG | 3 cut(s) | 117, 189, 252 |
| BstFNI | CGCG | 1 cut(s) | 290 |
| BstKTI | GATC | 1 cut(s) | 220 |
| BstMAI | GTCTC | 1 cut(s) | 286 |
| BstMBI | GATC | 1 cut(s) | 217 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 29 |
| BstNSI | RCATGY | 1 cut(s) | 137 |
| BstSCI | CCNGG | 1 cut(s) | 51 |
| BstSLI | GKGCMC | 2 cut(s) | 240, 286 |
| BstUI | CGCG | 1 cut(s) | 290 |
| BstV2I | GAAGAC | 1 cut(s) | 82 |
| Cac8I | GCNNGC | 1 cut(s) | 282 |
| Csp6I | GTAC | 1 cut(s) | 265 |
| CviAII | CATG | 1 cut(s) | 134 |
| CviJI | RGCY | 3 cut(s) | 29, 181, 303 |
| CviKI_1 | RGCY | 3 cut(s) | 29, 181, 303 |
| CviQI | GTAC | 1 cut(s) | 265 |
| DdeI | CTNAG | 3 cut(s) | 117, 189, 252 |
| DpnI | GATC | 1 cut(s) | 219 |
| DpnII | GATC | 1 cut(s) | 217 |
| Eam1104I | CTCTTC | 1 cut(s) | 155 |
| EarI | CTCTTC | 1 cut(s) | 155 |
| Eco88I | CYCGRG | 1 cut(s) | 269 |
| FaeI | CATG | 1 cut(s) | 137 |
| FaiI | YATR | 5 cut(s) | 38, 135, 184, 186, 319 |
| FatI | CATG | 1 cut(s) | 133 |
| Fnu4HI | GCNGC | 1 cut(s) | 30 |
| Fsp4HI | GCNGC | 1 cut(s) | 30 |
| FspBI | CTAG | 1 cut(s) | 328 |
| GluI | GCNGC | 1 cut(s) | 30 |
| HapII | CCGG | 1 cut(s) | 52 |
| Hin1II | CATG | 1 cut(s) | 137 |
| HpaII | CCGG | 1 cut(s) | 52 |
| HphI | GGTGA | 1 cut(s) | 269 |
| Hpy166II | GTNNAC | 1 cut(s) | 284 |
| Hpy8I | GTNNAC | 1 cut(s) | 284 |
| HpyAV | CCTTC | 1 cut(s) | 321 |
| HpyCH4IV | ACGT | 1 cut(s) | 263 |
| HpyCH4V | TGCA | 2 cut(s) | 23, 284 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 29 |
| HpyF3I | CTNAG | 3 cut(s) | 117, 189, 252 |
| HpySE526I | ACGT | 1 cut(s) | 263 |
| Hsp92II | CATG | 1 cut(s) | 137 |
| Kzo9I | GATC | 1 cut(s) | 217 |
| LmnI | GCTCC | 1 cut(s) | 130 |
| LpnPI | CCDG | 6 cut(s) | 39, 65, 92, 191, 239, 281 |
| MaeI | CTAG | 1 cut(s) | 328 |
| MaeII | ACGT | 1 cut(s) | 263 |
| MaeIII | GTNAC | 1 cut(s) | 257 |
| MalI | GATC | 1 cut(s) | 219 |
| MboI | GATC | 1 cut(s) | 217 |
| MboII | GAAGA | 2 cut(s) | 82, 172 |
| MhlI | GDGCHC | 2 cut(s) | 240, 286 |
| MluCI | AATT | 1 cut(s) | 206 |
| MmeI | TCCRAC | 1 cut(s) | 85 |
| MnlI | CCTC | 3 cut(s) | 156, 162, 265 |
| MspI | CCGG | 1 cut(s) | 52 |
| MspR9I | CCNGG | 1 cut(s) | 53 |
| Mva1269I | GAATGC | 1 cut(s) | 25 |
| MvnI | CGCG | 1 cut(s) | 290 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 29 |
| NciI | CCSGG | 1 cut(s) | 53 |
| NdeII | GATC | 1 cut(s) | 217 |
| NlaIII | CATG | 1 cut(s) | 137 |
| NmuCI | GTSAC | 1 cut(s) | 257 |
| NspI | RCATGY | 1 cut(s) | 137 |
| PctI | GAATGC | 1 cut(s) | 25 |
| PkrI | GCNGC | 1 cut(s) | 31 |
| Ppu21I | YACGTR | 1 cut(s) | 264 |
| RsaI | GTAC | 1 cut(s) | 266 |
| RsaNI | GTAC | 1 cut(s) | 265 |
| SatI | GCNGC | 1 cut(s) | 30 |
| Sau3AI | GATC | 1 cut(s) | 217 |
| ScrFI | CCNGG | 1 cut(s) | 53 |
| SduI | GDGCHC | 2 cut(s) | 240, 286 |
| SetI | ASST | 4 cut(s) | 67, 167, 183, 266 |
| Sse9I | AATT | 1 cut(s) | 206 |
| SsiI | CCGC | 2 cut(s) | 30, 128 |
| SspMI | CTAG | 1 cut(s) | 328 |
| StyD4I | CCNGG | 1 cut(s) | 51 |
| TaiI | ACGT | 1 cut(s) | 266 |
| TaqI | TCGA | 2 cut(s) | 122, 139 |
| TasI | AATT | 1 cut(s) | 206 |
| TauI | GCSGC | 1 cut(s) | 32 |
| TseFI | GTSAC | 1 cut(s) | 257 |
| Tsp45I | GTSAC | 1 cut(s) | 257 |
| TspDTI | ATGAA | 2 cut(s) | 62, 82 |
| VneI | GTGCAC | 1 cut(s) | 282 |
| XceI | RCATGY | 1 cut(s) | 137 |
| XspI | CTAG | 1 cut(s) | 328 |