transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SH3_Tf2-1 | PF24626 | 114 - 178 | 2e-28 | Tf2-1-like, SH3 domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 13 |
| AciI | CCGC | 1 cut(s) | 13 |
| AclWI | GGATC | 3 cut(s) | 536, 610, 726 |
| AcsI | RAATTY | 2 cut(s) | 248, 329 |
| AfaI | GTAC | 4 cut(s) | 498, 533, 612, 639 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 186, 374, 649 |
| AflIII | ACRYGT | 1 cut(s) | 550 |
| AgsI | TTSAA | 5 cut(s) | 233, 329, 335, 358, 695 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 321, 353 |
| AluBI | AGCT | 4 cut(s) | 152, 300, 563, 701 |
| AluI | AGCT | 4 cut(s) | 152, 300, 563, 701 |
| Alw26I | GTCTC | 2 cut(s) | 262, 520 |
| AlwI | GGATC | 3 cut(s) | 536, 610, 726 |
| ApoI | RAATTY | 2 cut(s) | 248, 329 |
| AspS9I | GGNCC | 3 cut(s) | 174, 218, 425 |
| AsuHPI | GGTGA | 3 cut(s) | 268, 353, 677 |
| AvaII | GGWCC | 3 cut(s) | 174, 218, 425 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 594, 626 |
| BccI | CCATC | 1 cut(s) | 88 |
| BceAI | ACGGC | 1 cut(s) | 294 |
| BciVI | GTATCC | 1 cut(s) | 747 |
| BclI | TGATCA | 1 cut(s) | 258 |
| BcoDI | GTCTC | 2 cut(s) | 262, 520 |
| BfuI | GTATCC | 1 cut(s) | 747 |
| BglII | AGATCT | 1 cut(s) | 586 |
| BmcAI | AGTACT | 1 cut(s) | 639 |
| Bme18I | GGWCC | 3 cut(s) | 174, 218, 425 |
| BmgT120I | GGNCC | 3 cut(s) | 174, 218, 425 |
| BmiI | GGNNCC | 5 cut(s) | 141, 176, 426, 427, 711 |
| BmsI | GCATC | 1 cut(s) | 331 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 255, 287 |
| BpuEI | CTTGAG | 2 cut(s) | 257, 477 |
| BsaJI | CCNNGG | 2 cut(s) | 368, 413 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 186, 374, 649 |
| Bse1I | ACTGG | 1 cut(s) | 608 |
| BseDI | CCNNGG | 2 cut(s) | 368, 413 |
| BseGI | GGATG | 1 cut(s) | 196 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 186, 374, 649 |
| BseMII | CTCAG | 1 cut(s) | 213 |
| BseNI | ACTGG | 1 cut(s) | 608 |
| BslFI | GGGAC | 1 cut(s) | 411 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 186, 374, 649 |
| BsmAI | GTCTC | 2 cut(s) | 262, 520 |
| BsmFI | GGGAC | 1 cut(s) | 411 |
| Bsp143I | GATC | 6 cut(s) | 258, 541, 586, 615, 622, 718 |
| BspACI | CCGC | 1 cut(s) | 13 |
| BspCNI | CTCAG | 1 cut(s) | 214 |
| BspLI | GGNNCC | 5 cut(s) | 141, 176, 426, 427, 711 |
| BspPI | GGATC | 3 cut(s) | 536, 610, 726 |
| BspQI | GCTCTTC | 1 cut(s) | 290 |
| BsrBI | CCGCTC | 1 cut(s) | 13 |
| BsrI | ACTGG | 1 cut(s) | 608 |
| BssECI | CCNNGG | 2 cut(s) | 368, 413 |
| BssMI | GATC | 6 cut(s) | 258, 541, 586, 615, 622, 718 |
| BssT1I | CCWWGG | 2 cut(s) | 368, 413 |
| Bst4CI | ACNGT | 3 cut(s) | 116, 168, 735 |
| Bst6I | CTCTTC | 1 cut(s) | 290 |
| BstDEI | CTNAG | 3 cut(s) | 9, 222, 407 |
| BstF5I | GGATG | 1 cut(s) | 196 |
| BstKTI | GATC | 6 cut(s) | 261, 544, 589, 618, 625, 721 |
| BstMAI | GTCTC | 2 cut(s) | 262, 520 |
| BstMBI | GATC | 6 cut(s) | 258, 541, 586, 615, 622, 718 |
| BstNSI | RCATGY | 1 cut(s) | 554 |
| BstX2I | RGATCY | 2 cut(s) | 586, 615 |
| BstYI | RGATCY | 2 cut(s) | 586, 615 |
| BsuI | GTATCC | 1 cut(s) | 747 |
| BtsCI | GGATG | 1 cut(s) | 196 |
| BtsIMutI | CAGTG | 2 cut(s) | 173, 537 |
| Cfr13I | GGNCC | 3 cut(s) | 174, 218, 425 |
| Csp6I | GTAC | 4 cut(s) | 497, 532, 611, 638 |
| CviAII | CATG | 4 cut(s) | 500, 512, 520, 551 |
| CviJI | RGCY | 9 cut(s) | 47, 89, 140, 152, 281, 300, 473, 563, 701 |
| CviKI_1 | RGCY | 9 cut(s) | 47, 89, 140, 152, 281, 300, 473, 563, 701 |
| CviQI | GTAC | 4 cut(s) | 497, 532, 611, 638 |
| DdeI | CTNAG | 3 cut(s) | 9, 222, 407 |
| DpnI | GATC | 6 cut(s) | 260, 543, 588, 617, 624, 720 |
| DpnII | GATC | 6 cut(s) | 258, 541, 586, 615, 622, 718 |
| DraI | TTTAAA | 1 cut(s) | 64 |
| Eam1104I | CTCTTC | 1 cut(s) | 290 |
| EarI | CTCTTC | 1 cut(s) | 290 |
| Eco130I | CCWWGG | 2 cut(s) | 368, 413 |
| Eco47I | GGWCC | 3 cut(s) | 174, 218, 425 |
| EcoO109I | RGGNCCY | 2 cut(s) | 174, 425 |
| EcoT14I | CCWWGG | 2 cut(s) | 368, 413 |
| ErhI | CCWWGG | 2 cut(s) | 368, 413 |
| FaeI | CATG | 4 cut(s) | 503, 515, 523, 554 |
| FaqI | GGGAC | 1 cut(s) | 411 |
| FatI | CATG | 4 cut(s) | 499, 511, 519, 550 |
| FauNDI | CATATG | 1 cut(s) | 595 |
| FbaI | TGATCA | 1 cut(s) | 258 |
| FokI | GGATG | 1 cut(s) | 203 |
| Hin1II | CATG | 4 cut(s) | 503, 515, 523, 554 |
| HindIII | AAGCTT | 1 cut(s) | 150 |
| HinfI | GANTC | 3 cut(s) | 5, 270, 682 |
| HphI | GGTGA | 3 cut(s) | 268, 353, 677 |
| Hpy166II | GTNNAC | 1 cut(s) | 395 |
| Hpy188I | TCNGA | 3 cut(s) | 10, 263, 644 |
| Hpy188III | TCNNGA | 4 cut(s) | 221, 274, 326, 629 |
| Hpy8I | GTNNAC | 1 cut(s) | 395 |
| Hpy99I | CGWCG | 1 cut(s) | 630 |
| HpyAV | CCTTC | 2 cut(s) | 367, 555 |
| HpyCH4III | ACNGT | 3 cut(s) | 116, 168, 735 |
| HpyCH4V | TGCA | 1 cut(s) | 104 |
| HpyF3I | CTNAG | 3 cut(s) | 9, 222, 407 |
| Hsp92II | CATG | 4 cut(s) | 503, 515, 523, 554 |
| KflI | GGGWCCC | 1 cut(s) | 425 |
| Ksp22I | TGATCA | 1 cut(s) | 258 |
| Kzo9I | GATC | 6 cut(s) | 258, 541, 586, 615, 622, 718 |
| LguI | GCTCTTC | 1 cut(s) | 290 |
| LmnI | GCTCC | 1 cut(s) | 145 |
| LpnPI | CCDG | 5 cut(s) | 234, 573, 621, 701, 726 |
| LweI | GCATC | 1 cut(s) | 331 |
| MaeIII | GTNAC | 2 cut(s) | 116, 555 |
| MalI | GATC | 6 cut(s) | 260, 543, 588, 617, 624, 720 |
| MbiI | CCGCTC | 1 cut(s) | 13 |
| MboI | GATC | 6 cut(s) | 258, 541, 586, 615, 622, 718 |
| MboII | GAAGA | 6 cut(s) | 44, 307, 596, 611, 614, 707 |
| MflI | RGATCY | 2 cut(s) | 586, 615 |
| MluCI | AATT | 4 cut(s) | 59, 248, 329, 447 |
| MlyI | GAGTC | 1 cut(s) | 264 |
| MnlI | CCTC | 6 cut(s) | 36, 392, 489, 672, 709, 720 |
| MseI | TTAA | 3 cut(s) | 63, 252, 666 |
| NdeI | CATATG | 1 cut(s) | 595 |
| NdeII | GATC | 6 cut(s) | 258, 541, 586, 615, 622, 718 |
| NlaIII | CATG | 4 cut(s) | 503, 515, 523, 554 |
| NlaIV | GGNNCC | 5 cut(s) | 141, 176, 426, 427, 711 |
| NspI | RCATGY | 1 cut(s) | 554 |
| PciI | ACATGT | 1 cut(s) | 550 |
| PciSI | GCTCTTC | 1 cut(s) | 290 |
| PfeI | GAWTC | 1 cut(s) | 682 |
| PleI | GAGTC | 1 cut(s) | 264 |
| PpsI | GAGTC | 1 cut(s) | 264 |
| PpuMI | RGGWCCY | 2 cut(s) | 174, 425 |
| PscI | ACATGT | 1 cut(s) | 550 |
| Psp5II | RGGWCCY | 2 cut(s) | 174, 425 |
| PspN4I | GGNNCC | 5 cut(s) | 141, 176, 426, 427, 711 |
| PspPI | GGNCC | 3 cut(s) | 174, 218, 425 |
| PspPPI | RGGWCCY | 2 cut(s) | 174, 425 |
| PsuI | RGATCY | 2 cut(s) | 586, 615 |
| RsaI | GTAC | 4 cut(s) | 498, 533, 612, 639 |
| RsaNI | GTAC | 4 cut(s) | 497, 532, 611, 638 |
| SapI | GCTCTTC | 1 cut(s) | 290 |
| SaqAI | TTAA | 3 cut(s) | 63, 252, 666 |
| Sau3AI | GATC | 6 cut(s) | 258, 541, 586, 615, 622, 718 |
| Sau96I | GGNCC | 3 cut(s) | 174, 218, 425 |
| ScaI | AGTACT | 1 cut(s) | 639 |
| SchI | GAGTC | 1 cut(s) | 264 |
| SfaNI | GCATC | 1 cut(s) | 331 |
| SinI | GGWCC | 3 cut(s) | 174, 218, 425 |
| SmlI | CTYRAG | 2 cut(s) | 272, 492 |
| SmoI | CTYRAG | 2 cut(s) | 272, 492 |
| Sse9I | AATT | 4 cut(s) | 59, 248, 329, 447 |
| SsiI | CCGC | 1 cut(s) | 13 |
| StyI | CCWWGG | 2 cut(s) | 368, 413 |
| TaaI | ACNGT | 3 cut(s) | 116, 168, 735 |
| TaqI | TCGA | 1 cut(s) | 125 |
| TasI | AATT | 4 cut(s) | 59, 248, 329, 447 |
| TatI | WGTACW | 4 cut(s) | 496, 531, 610, 637 |
| TfiI | GAWTC | 1 cut(s) | 682 |
| Tru1I | TTAA | 3 cut(s) | 63, 252, 666 |
| Tru9I | TTAA | 3 cut(s) | 63, 252, 666 |
| TscAI | CASTG | 2 cut(s) | 173, 544 |
| TspDTI | ATGAA | 2 cut(s) | 207, 612 |
| TspRI | CASTG | 2 cut(s) | 173, 544 |
| VpaK11BI | GGWCC | 3 cut(s) | 174, 218, 425 |
| XapI | RAATTY | 2 cut(s) | 248, 329 |
| XceI | RCATGY | 1 cut(s) | 554 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 128 |
| ZrmI | AGTACT | 1 cut(s) | 639 |