Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000094

Physical Location & Seq

Genomic Coordinates Forward (+)

13866066 .. 13868507

Gene Structure 2442 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10361.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2442 bp

ATGAGGTTTTATGTATCAAAGACTCCTTATCAAATGGGGAGAACTGAACTTCAAGAGTTGAAGGTTCAGATTGAGGGTCTTCTCGAGCAGGGATTCATTAGACCTAGCACCTCGCCTTGGGGTGCACCAGTGTTGTTTGTGAGGAAGAAGGATGATACACTCCGGTTGTGTGTGGACTATCGGGAGTTGAACAAGGTGACCATCAAGAATAGGTATCCCTTACCTAGGATTGATGATATGTTTGATCAGCTTAGAGGTGCTACGGTATTCTCTAAGATTGACCTGAAGTCCGGTTATCACCAGTTCAGGGTGAAGGAGGAGGATATTCCGAAGACCGCATTCAGGTCTAGATATGGGCATTACGAGTTCGTTGTTATGCCTTTTGGTCTAACTAATGCCCCTGCTGCTTTTATGGATTTGATGAACCGCATGTTCAGTCCTTATCTGGATGTGTTTGTAGTAGTATTTGTGGATGATATTTTGATTTACTCCAAGACTTTGGAGGATCATGATAGGCATCTATGGATCGTACTACAGGTTCTTAGGGAGGCCAAGTTGTATGCAAAGTTTGGGAAGTGTGAGTTTTGGAAGGAAGAGGTCAGGTTCCTTGGTCATGTGGTATCAAAGGAGGGGATTTTGGTGGATCCCTCTAAGGTGGAGGCGGTGTTGAATTGGAGTCGTCCCACTACTCCCACGGAGATCTGTAGTTTCCTTGGGTTGGCAGGATACTACCGGAGATTTATTGAGGGATTTTCTAGCATTGCCTCTTCTTTGACCAAGTTGACAAAGAAGAATGCCAAGTTTGTGTGGACCGATGAGTGTGTAAAGGCATTTGAGGAGTTGAAGACTAGGTTGACTACCGCCCCAGTGTTGGTCATTCCTATTAGTGGTGTTGGCTATGTTGTTTATAGCGACGCTTCTCATCGGGGTTTAGGTTGTGTGTTGATGCAGCTTGGCGGTGTTGTGGCATATGGCTCTAGGAAGTTGAAGGTTCATGAGAAGAATTATCCAACTCATGACCTAGAGCTAGCCGCTGTAGTATTTGCCTTGAAGATTTGGAGGCATTACTTGTATGGAGAGAAGTTCGAACTCTTTTCTGATCATAAGAGTTTGAAGTATTTATTATCTCAGAAAGATTTGAACATGAGGCAAAGGAGGTGGATGGAGCTCCTTAAGGACTATGACTTCACTTTGGAGTATCACCCTGGGAAAGCCAATGTAGTGGCGGATGCATTGAGCAGGAAGCCTAGGGGTATAGTCGCCTCTATGATGGTGCAGGAGTGGCTCATGTTGGAGACTATTTCTGAGTTTGGCATTCTGCCATCAGGCAGGGAGCAGGGGATCTTCCTTGGGAGCGCCTCTGTGCAGCCCACTTTGATTTCCAGGATCATCCAGGGCCAAGCATATGACGAGTTCTCACGTACTAAGGTGGCAGAGTTAGTGGTGGACTTGTTGGATGATTGTCCTTCCGAGTGGTCGGTTGGATCAGATGGTGGATTGAGGTATAGATTGAGATTATGTGTTCCCGATAGTAATGATCTCAAAGGGGAGATCCTTTGGGAGGCACATCGATCTCGTTATTCGGTGCACCCAGGGAGCACCAAGATGTATAAAGACTTGCGTAGGCAGTTTTGGTGGAATGGGATGAAGAAGGATGTAGCAGAGTATGTGTCCAAGTGTCTCACTTGTCAACAGGTGAAGGCGGAGCACCAGAGGCCTGGAGGTATGTTGCAGCCGTTATCTATTCCTACTTGGAAGTGGGAGCAGATTTCTATGGACTTTGTGACTGGACTACCTAAGTCCAAGCTTGGACATGATGCTATATGGGTGATTGTGGACCGTTTGACAAAGTCAGCACATTTCCTTCCCGTGTCGATGTTGGACACGGTAGATGCTTTGTGCAAGTTGTATGTGAAGGTGATAGTGAGACTTCATGGAGTGCCTATTTCGATTGTTTCAGATCGAGACCCCCGATTCACTTCAAAGTTTTGGGGTGGCTTTCAGAAAGCCATGGGTACTACATTAGACATGAGTACAGCATTTCACCCTCAGACTGATGGGCAGACTGAGCGGGTGAATCAGGTGTTAGAAGATATGCTGAGGGCTTATGTCATGGACTTCAAGGGAAGTTGGGAGGATCACCTCCAATTGATTGAGTTTGCCTACAATAATAGCTATCACTCTAGTATCGGCATGGCACCATATGAGGCACTCTATGGGAGGCCGTGTAGATCACCTGTTTGTTGGGCGGAGGTGGGTGATAGTGAGCTGTTGGGTCCTGATATTGTTGAAGAGACGACTGAGAAGGTCTCTATTATCCGAGATAGGATCCGAACGGCGCAAAGCAGGCAAAAGAGTTATGCCGACTTGAAGAGGAGGCAAGTAGAGTTTGATGTTGGGGATCGTGTGTTCTTGAAGGTCTCACCTACAAAAGGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

814

Amino Acids

93.5

Weight (kDa)

8.8

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_1	PF00078	47 - 206	9.8e-38	Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2	PF17919	270 - 363	2.1e-28	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	301 - 394	1.3e-31	RNase H-like domain found in reverse transcriptase
Integrase_H2C2	PF17921	513 - 568	8.3e-20	Integrase zinc binding domain
rve	PF00665	589 - 683	4.3e-06	Integrase core domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42190
fragaria_vesca	FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica	MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica	Prupe.7G030900_v2.0.a1
pyrus_communis	pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis	RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora	Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii	Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa	Rorug06G0233600
rosa_samantha	Rh3CG302700 Rh6DG286700
rosa_wichuraiana	Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	2197
AccBSI	CCGCTC	1 cut(s)	2071
AcuI	CTGAAG	1 cut(s)	305
AfaI	GTAC	4 cut(s)	531, 1423, 2017, 2035
AfiI	CCNNNNNNNGG	9 cut(s)	117, 225, 307, 342, 718, 871, 887, 1561, 2432
AflII	CTTAAG	1 cut(s)	1172
AhdI	GACNNNNNGTC	1 cut(s)	286
AjnI	CCWGG	5 cut(s)	1204, 1382, 1392, 1591, 1717
AloI	GAACNNNNNNTCC	2 cut(s)	2393, 2425
AluBI	AGCT	7 cut(s)	250, 952, 1027, 1168, 1807, 2175, 2269
AluI	AGCT	7 cut(s)	250, 952, 1027, 1168, 1807, 2175, 2269
Alw21I	GWGCWC	5 cut(s)	127, 1170, 1590, 1601, 1710
Alw26I	GTCTC	7 cut(s)	1289, 1685, 1921, 1959, 2288, 2314, 2425
Alw44I	GTGCAC	2 cut(s)	123, 1586
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	4 cut(s)	549, 1396, 1715, 2222
ApaLI	GTGCAC	2 cut(s)	123, 1586
ApeKI	GCWGC	4 cut(s)	404, 949, 1366, 1732
AspA2I	CCTAGG	2 cut(s)	224, 1247
AspLEI	GCGC	2 cut(s)	1358, 2341
AspS9I	GGNCC	4 cut(s)	810, 1396, 1837, 2276
AsuII	TTCGAA	1 cut(s)	1086
AsuNHI	GCTAGC	1 cut(s)	1027
AvaI	CYCGRG	1 cut(s)	83
AvaII	GGWCC	3 cut(s)	810, 1837, 2276
AvrII	CCTAGG	2 cut(s)	224, 1247
BaeGI	GKGCMC	2 cut(s)	127, 1590
BaeI	ACNNNNGTAYC	2 cut(s)	2170, 2203
BamHI	GGATCC	2 cut(s)	643, 2328
BanI	GGYRCC	1 cut(s)	2197
BanII	GRGCYC	1 cut(s)	1170
BbsI	GAAGAC	3 cut(s)	71, 338, 851
Bbv12I	GWGCWC	5 cut(s)	127, 1170, 1590, 1601, 1710
BbvCI	CCTCAGC	1 cut(s)	2099
BbvI	GCAGC	4 cut(s)	391, 961, 1378, 1744
BccI	CCATC	6 cut(s)	209, 1156, 1264, 1330, 1484, 2051
BceAI	ACGGC	3 cut(s)	1720, 2209, 2352
BciT130I	CCWGG	5 cut(s)	1206, 1384, 1394, 1593, 1719
BciVI	GTATCC	2 cut(s)	225, 719
BclI	TGATCA	2 cut(s)	244, 1099
BcoDI	GTCTC	7 cut(s)	1289, 1685, 1921, 1959, 2288, 2314, 2425
BfmI	CTRYAG	3 cut(s)	533, 703, 1035
BfoI	RGCGCY	1 cut(s)	1359
BfrI	CTTAAG	1 cut(s)	1172
BfuI	GTATCC	2 cut(s)	225, 719
BglII	AGATCT	1 cut(s)	699
BisI	GCNGC	5 cut(s)	405, 950, 1032, 1367, 1733
BlnI	CCTAGG	2 cut(s)	224, 1247
BlsI	GCNGC	5 cut(s)	406, 951, 1033, 1368, 1734
Bme1390I	CCNGG	5 cut(s)	1206, 1384, 1394, 1593, 1719
Bme18I	GGWCC	3 cut(s)	810, 1837, 2276
BmeRI	GACNNNNNGTC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	83
BmgT120I	GGNCC	4 cut(s)	810, 1396, 1837, 2276
BmiI	GGNNCC	5 cut(s)	605, 645, 2199, 2277, 2330
BmrFI	CCNGG	5 cut(s)	1206, 1384, 1394, 1593, 1719
BmrI	ACTGGG	1 cut(s)	860
BmsI	GCATC	5 cut(s)	526, 936, 1219, 1807, 1882
BmtI	GCTAGC	1 cut(s)	1031
BmuI	ACTGGG	1 cut(s)	860
BpiI	GAAGAC	3 cut(s)	71, 338, 851
BplI	GAGNNNNNCTC	2 cut(s)	2294, 2326
BpmI	CTGGAG	1 cut(s)	1740
Bpu10I	CCTNAGC	1 cut(s)	2099
Bpu14I	TTCGAA	1 cut(s)	1086
Bsa29I	ATCGAT	1 cut(s)	1570
BsaAI	YACGTR	1 cut(s)	1421
BsaBI	GATNNNNATC	1 cut(s)	516
BsaI	GGTCTC	3 cut(s)	1959, 2314, 2425
BsaWI	WCCGGW	3 cut(s)	162, 290, 732
BsaXI	ACNNNNNCTCC	6 cut(s)	539, 569, 650, 680, 2212, 2242
Bsc4I	CCNNNNNNNGG	9 cut(s)	117, 225, 307, 342, 718, 871, 887, 1561, 2432
Bse1I	ACTGG	4 cut(s)	128, 301, 866, 1792
Bse3DI	GCAATG	1 cut(s)	759
Bse8I	GATNNNNATC	1 cut(s)	516
BseBI	CCWGG	5 cut(s)	1206, 1384, 1394, 1593, 1719
BseCI	ATCGAT	1 cut(s)	1570
BseGI	GGATG	9 cut(s)	157, 454, 478, 1167, 1234, 1389, 1462, 1650, 1660
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	9 cut(s)	117, 225, 307, 342, 718, 871, 887, 1561, 2432
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	6 cut(s)	1142, 1296, 2058, 2063, 2090, 2292
BseNI	ACTGG	4 cut(s)	128, 301, 866, 1792
BseRI	GAGGAG	3 cut(s)	332, 851, 2389
BseSI	GKGCMC	2 cut(s)	127, 1590
BseXI	GCAGC	4 cut(s)	391, 961, 1378, 1744
BsgI	GTGCAG	2 cut(s)	1295, 1385
BshFI	GGCC	4 cut(s)	551, 1398, 1717, 2224
BshNI	GGYRCC	1 cut(s)	2197
BshVI	ATCGAT	1 cut(s)	1570
BsiHKAI	GWGCWC	5 cut(s)	127, 1170, 1590, 1601, 1710
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	3 cut(s)	163, 291, 733
BslFI	GGGAC	1 cut(s)	666
BslI	CCNNNNNNNGG	9 cut(s)	117, 225, 307, 342, 718, 871, 887, 1561, 2432
BsmAI	GTCTC	7 cut(s)	1289, 1685, 1921, 1959, 2288, 2314, 2425
BsmBI	CGTCTC	1 cut(s)	2288
BsmFI	GGGAC	1 cut(s)	666
BsmI	GAATGC	3 cut(s)	338, 799, 1314
BsnI	GGCC	4 cut(s)	551, 1398, 1717, 2224
Bso31I	GGTCTC	3 cut(s)	1959, 2314, 2425
BsoBI	CYCGRG	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	1086
Bsp1286I	GDGCHC	5 cut(s)	127, 1170, 1590, 1601, 1710
Bsp19I	CCATGG	1 cut(s)	2010
BspANI	GGCC	4 cut(s)	551, 1398, 1717, 2224
BspCNI	CTCAG	6 cut(s)	1141, 1297, 2059, 2062, 2091, 2293
BspDI	ATCGAT	1 cut(s)	1570
BspHI	TCATGA	3 cut(s)	508, 994, 1015
BspLI	GGNNCC	5 cut(s)	605, 645, 2199, 2277, 2330
BspOI	GCTAGC	1 cut(s)	1031
BspT104I	TTCGAA	1 cut(s)	1086
BspT107I	GGYRCC	1 cut(s)	2197
BspTI	CTTAAG	1 cut(s)	1172
BspTNI	GGTCTC	3 cut(s)	1959, 2314, 2425
BsrBI	CCGCTC	1 cut(s)	2071
BsrDI	GCAATG	1 cut(s)	759
BsrI	ACTGG	4 cut(s)	128, 301, 866, 1792
BssT1I	CCWWGG	7 cut(s)	116, 224, 607, 712, 1247, 1348, 2010
Bst2UI	CCWGG	5 cut(s)	1206, 1384, 1394, 1593, 1719
Bst4CI	ACNGT	3 cut(s)	265, 1841, 1888
Bst6I	CTCTTC	4 cut(s)	588, 772, 2286, 2366
BstAFI	CTTAAG	1 cut(s)	1172
BstBAI	YACGTR	1 cut(s)	1421
BstBI	TTCGAA	1 cut(s)	1086
BstC8I	GCNNGC	2 cut(s)	1029, 2348
BstDSI	CCRYGG	2 cut(s)	693, 2010
BstEII	GGTNACC	1 cut(s)	196
BstENI	CCTNNNNNAGG	3 cut(s)	223, 1559, 2430
BstF5I	GGATG	9 cut(s)	157, 454, 478, 1167, 1234, 1389, 1462, 1650, 1660
BstH2I	RGCGCY	1 cut(s)	1359
BstHHI	GCGC	2 cut(s)	1358, 2341
BstMAI	GTCTC	7 cut(s)	1289, 1685, 1921, 1959, 2288, 2314, 2425
BstMWI	GCNNNNNNNGC	5 cut(s)	404, 1282, 1714, 2068, 2347
BstNI	CCWGG	5 cut(s)	1206, 1384, 1394, 1593, 1719
BstNSI	RCATGY	1 cut(s)	433
BstPI	GGTNACC	1 cut(s)	196
BstSCI	CCNGG	5 cut(s)	1204, 1382, 1392, 1591, 1717
BstSFI	CTRYAG	3 cut(s)	533, 703, 1035
BstSLI	GKGCMC	2 cut(s)	127, 1590
BstV1I	GCAGC	4 cut(s)	391, 961, 1378, 1744
BstV2I	GAAGAC	3 cut(s)	71, 338, 851
BstX2I	RGATCY	5 cut(s)	643, 699, 1341, 1551, 2328
BstXI	CCANNNNNNTGG	3 cut(s)	499, 1222, 1718
BstYI	RGATCY	5 cut(s)	643, 699, 1341, 1551, 2328
Bsu15I	ATCGAT	1 cut(s)	1570
BsuI	GTATCC	2 cut(s)	225, 719
BsuRI	GGCC	4 cut(s)	551, 1398, 1717, 2224
BsuTUI	ATCGAT	1 cut(s)	1570
BtgI	CCRYGG	2 cut(s)	693, 2010
BtsCI	GGATG	9 cut(s)	157, 454, 478, 1167, 1234, 1389, 1462, 1650, 1660
BtsIMutI	CAGTG	2 cut(s)	135, 873
Cac8I	GCNNGC	2 cut(s)	1029, 2348
CciI	TCATGA	3 cut(s)	508, 994, 1015
CfoI	GCGC	2 cut(s)	1358, 2341
Cfr13I	GGNCC	4 cut(s)	810, 1396, 1837, 2276
ClaI	ATCGAT	1 cut(s)	1570
CseI	GACGC	1 cut(s)	923
Csp6I	GTAC	4 cut(s)	530, 1422, 2016, 2034
CspCI	CAANNNNNGTGG	2 cut(s)	1139, 1174
CviQI	GTAC	4 cut(s)	530, 1422, 2016, 2034
DriI	GACNNNNNGTC	1 cut(s)	286
Eam1104I	CTCTTC	4 cut(s)	588, 772, 2286, 2366
Eam1105I	GACNNNNNGTC	1 cut(s)	286
EarI	CTCTTC	4 cut(s)	588, 772, 2286, 2366
EciI	GGCGGA	3 cut(s)	1241, 1718, 2264
Ecl136II	GAGCTC	1 cut(s)	1168
Eco130I	CCWWGG	7 cut(s)	116, 224, 607, 712, 1247, 1348, 2010
Eco147I	AGGCCT	1 cut(s)	1717
Eco24I	GRGCYC	1 cut(s)	1170
Eco31I	GGTCTC	3 cut(s)	1959, 2314, 2425
Eco47I	GGWCC	3 cut(s)	810, 1837, 2276
Eco53kI	GAGCTC	1 cut(s)	1168
Eco57I	CTGAAG	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	83
Eco91I	GGTNACC	1 cut(s)	196
EcoICRI	GAGCTC	1 cut(s)	1168
EcoNI	CCTNNNNNAGG	3 cut(s)	223, 1559, 2430
EcoO109I	RGGNCCY	1 cut(s)	2276
EcoO65I	GGTNACC	1 cut(s)	196
EcoRII	CCWGG	5 cut(s)	1204, 1382, 1392, 1591, 1717
EcoT14I	CCWWGG	7 cut(s)	116, 224, 607, 712, 1247, 1348, 2010
EcoT22I	ATGCAT	1 cut(s)	1234
EcoT38I	GRGCYC	1 cut(s)	1170
ErhI	CCWWGG	7 cut(s)	116, 224, 607, 712, 1247, 1348, 2010
Esp3I	CGTCTC	1 cut(s)	2288
FaqI	GGGAC	1 cut(s)	666
FauI	CCCGC	1 cut(s)	2064
FauNDI	CATATG	3 cut(s)	970, 1405, 2203
FbaI	TGATCA	2 cut(s)	244, 1099
Fnu4HI	GCNGC	5 cut(s)	405, 950, 1032, 1367, 1733
FokI	GGATG	9 cut(s)	164, 461, 485, 1174, 1241, 1376, 1469, 1657, 1667
FriOI	GRGCYC	1 cut(s)	1170
Fsp4HI	GCNGC	5 cut(s)	405, 950, 1032, 1367, 1733
GlaI	GCGC	2 cut(s)	1357, 2340
GluI	GCNGC	5 cut(s)	405, 950, 1032, 1367, 1733
GsuI	CTGGAG	1 cut(s)	1740
HaeII	RGCGCY	1 cut(s)	1359
HaeIII	GGCC	4 cut(s)	551, 1398, 1717, 2224
HapII	CCGG	3 cut(s)	163, 291, 733
HgaI	GACGC	1 cut(s)	923
HhaI	GCGC	2 cut(s)	1358, 2341
Hin6I	GCGC	2 cut(s)	1356, 2339
HinP1I	GCGC	2 cut(s)	1356, 2339
HincII	GTYRAC	3 cut(s)	783, 855, 1691
HindII	GTYRAC	3 cut(s)	783, 855, 1691
HindIII	AAGCTT	1 cut(s)	1805
HinfI	GANTC	5 cut(s)	22, 93, 676, 1974, 2077
HpaII	CCGG	3 cut(s)	163, 291, 733
Hpy166II	GTNNAC	9 cut(s)	125, 175, 783, 810, 855, 1447, 1588, 1691, 1837
Hpy8I	GTNNAC	9 cut(s)	125, 175, 783, 810, 855, 1447, 1588, 1691, 1837
Hpy99I	CGWCG	1 cut(s)	917
HpyCH4III	ACNGT	3 cut(s)	265, 1841, 1888
HpyCH4IV	ACGT	1 cut(s)	1420
HpyCH4V	TGCA	9 cut(s)	125, 563, 949, 1232, 1276, 1366, 1588, 1732, 1902
HpyF10VI	GCNNNNNNNGC	5 cut(s)	404, 1282, 1714, 2068, 2347
HpySE526I	ACGT	1 cut(s)	1420
HspAI	GCGC	2 cut(s)	1356, 2339
Ksp22I	TGATCA	2 cut(s)	244, 1099
LmnI	GCTCC	7 cut(s)	1165, 1173, 1333, 1353, 1596, 1705, 1762
Lsp1109I	GCAGC	4 cut(s)	391, 961, 1378, 1744
LweI	GCATC	5 cut(s)	526, 936, 1219, 1807, 1882
MaeII	ACGT	1 cut(s)	1420
MaeIII	GTNAC	2 cut(s)	196, 1783
MbiI	CCGCTC	1 cut(s)	2071
MfeI	CAATTG	1 cut(s)	2147
MflI	RGATCY	5 cut(s)	643, 699, 1341, 1551, 2328
MhlI	GDGCHC	5 cut(s)	127, 1170, 1590, 1601, 1710
MluCI	AATT	3 cut(s)	670, 1003, 2147
MlyI	GAGTC	2 cut(s)	16, 685
MmeI	TCCRAC	5 cut(s)	1034, 1272, 1434, 1462, 1860
Mph1103I	ATGCAT	1 cut(s)	1234
MseI	TTAA	1 cut(s)	1173
MslI	CAYNNNNRTG	1 cut(s)	1604
MspA1I	CMGCKG	1 cut(s)	1034
MspCI	CTTAAG	1 cut(s)	1172
MspI	CCGG	3 cut(s)	163, 291, 733
MspR9I	CCNGG	5 cut(s)	1206, 1384, 1394, 1593, 1719
MunI	CAATTG	1 cut(s)	2147
Mva1269I	GAATGC	3 cut(s)	338, 799, 1314
MvaI	CCWGG	5 cut(s)	1206, 1384, 1394, 1593, 1719
MwoI	GCNNNNNNNGC	5 cut(s)	404, 1282, 1714, 2068, 2347
NcoI	CCATGG	1 cut(s)	2010
NdeI	CATATG	3 cut(s)	970, 1405, 2203
NheI	GCTAGC	1 cut(s)	1027
NlaIV	GGNNCC	5 cut(s)	605, 645, 2199, 2277, 2330
NmuCI	GTSAC	2 cut(s)	196, 1783
NsiI	ATGCAT	1 cut(s)	1234
NspI	RCATGY	1 cut(s)	433
NspV	TTCGAA	1 cut(s)	1086
PaeR7I	CTCGAG	1 cut(s)	83
PagI	TCATGA	3 cut(s)	508, 994, 1015
PasI	CCCWGGG	2 cut(s)	1205, 1592
PceI	AGGCCT	1 cut(s)	1717
PcsI	WCGNNNNNNNCGW	1 cut(s)	1969
PctI	GAATGC	3 cut(s)	338, 799, 1314
PfeI	GAWTC	3 cut(s)	93, 1974, 2077
PflFI	GACNNNGTC	1 cut(s)	1849
PfoI	TCCNGGA	1 cut(s)	1382
PkrI	GCNGC	5 cut(s)	406, 951, 1033, 1368, 1734
PleI	GAGTC	2 cut(s)	16, 684
PpsI	GAGTC	2 cut(s)	16, 684
Ppu21I	YACGTR	1 cut(s)	1421
PpuMI	RGGWCCY	1 cut(s)	2276
Psp124BI	GAGCTC	1 cut(s)	1170
Psp5II	RGGWCCY	1 cut(s)	2276
Psp6I	CCWGG	5 cut(s)	1204, 1382, 1392, 1591, 1717
PspEI	GGTNACC	1 cut(s)	196
PspGI	CCWGG	5 cut(s)	1204, 1382, 1392, 1591, 1717
PspN4I	GGNNCC	5 cut(s)	605, 645, 2199, 2277, 2330
PspPI	GGNCC	4 cut(s)	810, 1396, 1837, 2276
PspPPI	RGGWCCY	1 cut(s)	2276
PsrI	GAACNNNNNNTAC	2 cut(s)	522, 554
PsuI	RGATCY	5 cut(s)	643, 699, 1341, 1551, 2328
PsyI	GACNNNGTC	1 cut(s)	1849
RsaI	GTAC	4 cut(s)	531, 1423, 2017, 2035
RsaNI	GTAC	4 cut(s)	530, 1422, 2016, 2034
RseI	CAYNNNNRTG	1 cut(s)	1604
SacI	GAGCTC	1 cut(s)	1170
SaqAI	TTAA	1 cut(s)	1173
SatI	GCNGC	5 cut(s)	405, 950, 1032, 1367, 1733
Sau96I	GGNCC	4 cut(s)	810, 1396, 1837, 2276
SchI	GAGTC	2 cut(s)	16, 685
ScrFI	CCNGG	5 cut(s)	1206, 1384, 1394, 1593, 1719
SduI	GDGCHC	5 cut(s)	127, 1170, 1590, 1601, 1710
SfaNI	GCATC	5 cut(s)	526, 936, 1219, 1807, 1882
SfcI	CTRYAG	3 cut(s)	533, 703, 1035
Sfr274I	CTCGAG	1 cut(s)	83
SfuI	TTCGAA	1 cut(s)	1086
SinI	GGWCC	3 cut(s)	810, 1837, 2276
SlaI	CTCGAG	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	1604
SmlI	CTYRAG	2 cut(s)	83, 1172
SmoI	CTYRAG	2 cut(s)	83, 1172
Sse9I	AATT	3 cut(s)	670, 1003, 2147
SseBI	AGGCCT	1 cut(s)	1717
SstI	GAGCTC	1 cut(s)	1170
StuI	AGGCCT	1 cut(s)	1717
StyD4I	CCNGG	5 cut(s)	1204, 1382, 1392, 1591, 1717
StyI	CCWWGG	7 cut(s)	116, 224, 607, 712, 1247, 1348, 2010
TaaI	ACNGT	3 cut(s)	265, 1841, 1888
TaiI	ACGT	1 cut(s)	1423
TaqI	TCGA	6 cut(s)	84, 1086, 1570, 1874, 1949, 1963
TaqII	GACCGA	1 cut(s)	827
TasI	AATT	3 cut(s)	670, 1003, 2147
TatI	WGTACW	1 cut(s)	2033
TauI	GCSGC	1 cut(s)	1034
TfiI	GAWTC	3 cut(s)	93, 1974, 2077
Tru1I	TTAA	1 cut(s)	1173
Tru9I	TTAA	1 cut(s)	1173
TscAI	CASTG	2 cut(s)	135, 873
TseFI	GTSAC	2 cut(s)	196, 1783
TseI	GCWGC	4 cut(s)	404, 949, 1366, 1732
Tsp45I	GTSAC	2 cut(s)	196, 1783
TspDTI	ATGAA	5 cut(s)	85, 437, 983, 1661, 1922
TspGWI	ACGGA	1 cut(s)	710
TspRI	CASTG	2 cut(s)	135, 873
Tth111I	GACNNNGTC	1 cut(s)	1849
Vha464I	CTTAAG	1 cut(s)	1172
VneI	GTGCAC	2 cut(s)	123, 1586
VpaK11BI	GGWCC	3 cut(s)	810, 1837, 2276
XagI	CCTNNNNNAGG	3 cut(s)	223, 1559, 2430
XbaI	TCTAGA	1 cut(s)	347
XceI	RCATGY	1 cut(s)	433
XhoI	CTCGAG	1 cut(s)	83
XmaJI	CCTAGG	2 cut(s)	224, 1247
Zsp2I	ATGCAT	1 cut(s)	1234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.