Rroxscaffold_15G00447630
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000015
OG0000094
Physical Location & Seq
Reverse (-)
67505 .. 70270
2766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_15G00447630.1

Sequence Viewer

Length: 1131 bp
ATGGCGCCATCGGAGTTGGCCGAATTGCGAAAGCAACTGGATGAGTTGTTGGAAGCAGGATATGTGCAGCCATCTAAAGCACCCTATGGTGCGCCGGTTTTGTTTCAGAAGAAACAGGATGGATCCATGCGGATGTGTGTGGATTATCGAGCGCTTAACAAGGTGACGATCAAGAATAAGTATCCCATTCCAAATGCGGCAGACTTGTTTGATCGGTTGAGCAAAGCATCCTACTTCACAAAGCTGGACCTACGAGCAGGATACTGGCAAAGGAAGATCAAGGCCATAGTTGATTGGTCTGCCCCCACCAAGGTGCCTGATTTGCGCTCATTCCTTGGGCTAGCAAATTACTATCGGAGATTCATAAGAAATTACTCCAAGAGGGTGAGTCCCTTGACAGATTTGTTAAGGAAGGAGCACAAGTGGGAATGGACGAGTGAATGCCAGAAGTCCTTTGAAGAACTGAAGGAGGCAGTCACTGCGGCACCAGTGTTGGGTCTTCCGGATTTCCAGAAACCGTTCGAAGTCCACACGGATGCCTCCGGCCGAGCCATTGGAGGTGTGTTGGTGCAAGAGGGTCATCCTCTAGCCTTTGAGAGCCGAAAATTGAAGGATGCTGAACAACGTTATTCAACTCACGAGAAGGAAATGGTTGCTGTGATTCATTGCCTAGACGTGTGGAGGCATTACTTGCTGGTTCACCGAGGTCTGATTGCAAAGTATGATGGTCCTTTCGAGGTGGTCAAAAGGATTGGAAATGTAGCTTACAGGTTAAAGCTACCAGAGCGGTTGAAGATTCATCCGACATTCCATGTCAGTTATCTAAAGCCTTTTCACAAAGACTTGGTCGATGGTGGACGTCAACAAGGGAAAAGGGCTGCTCCTGTCATTCGGAAACAGTTTAATAAACAGGTGGAGAAGATACTTGACCACAGAACCTTGGGGCAAAGCAAGAAGAATCGGCGGACCGACTTCTTGGTACAATGGAAAGGAGACAGCGCAGGGGATGCCAGTTGGGAAAGGGATGCAACCCTTTGGCAGTTTGAAAAACAAATCAATGAGTACCTCAAAGCACAACCGACGACGAGGGCGTCGTCGAGCTCTAGTGGGGGTGGTTTGTTAGCCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo RVT_1 Retrotrans_gag gag-asp_proteas

Protein Analysis

376

Amino Acids

43.17

Weight (kDa)

9.71

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 37 - 117 6.3e-08 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 144 - 234 2.7e-33 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 169 - 234 1.1e-21 RNase H-like domain found in reverse transcriptase
SH3_Tf2-1 PF24626 235 - 279 1.4e-17 Tf2-1-like, SH3 domain
Integrase_p58_C PF22938 243 - 277 7e-06 Integrase p58, C-terminal domain
Chromo PF00385 304 - 357 4.8e-08 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1090
AatII GACGTC 1 cut(s) 862
AccB1I GGYRCC 3 cut(s) 4, 313, 484
AccBSI CCGCTC 1 cut(s) 787
AccIII TCCGGA 1 cut(s) 502
AciI CCGC 5 cut(s) 130, 197, 482, 787, 964
AclI AACGTT 1 cut(s) 625
AclWI GGATC 2 cut(s) 117, 130
AcoI YGGCCR 2 cut(s) 18, 544
AcuI CTGAAG 1 cut(s) 485
AcyI GRCGYC 3 cut(s) 5, 859, 1091
AfaI GTAC 2 cut(s) 981, 1064
AfeI AGCGCT 1 cut(s) 153
AfiI CCNNNNNNNGG 2 cut(s) 310, 494
AflIII ACRYGT 1 cut(s) 675
AgsI TTSAA 5 cut(s) 458, 610, 633, 793, 1046
AjiI CACGTC 1 cut(s) 676
AleI CACNNNNGTG 1 cut(s) 311
AluBI AGCT 4 cut(s) 244, 764, 778, 1101
AluI AGCT 4 cut(s) 244, 764, 778, 1101
Alw21I GWGCWC 2 cut(s) 420, 1103
Alw26I GTCTC 1 cut(s) 987
AlwI GGATC 2 cut(s) 117, 130
AlwNI CAGNNNCTG 1 cut(s) 479
Aor13HI TCCGGA 1 cut(s) 502
Aor51HI AGCGCT 1 cut(s) 153
AoxI GGCC 3 cut(s) 18, 282, 544
ApeKI GCWGC 2 cut(s) 67, 878
ArsI GACNNNNNNTTYG 2 cut(s) 831, 863
Asp700I GAANNNNTTC 1 cut(s) 518
AspLEI GCGC 5 cut(s) 7, 94, 154, 327, 1001
AspS9I GGNCC 3 cut(s) 247, 728, 966
AsuHPI GGTGA 3 cut(s) 175, 397, 692
AsuII TTCGAA 1 cut(s) 522
AsuNHI GCTAGC 1 cut(s) 340
AvaII GGWCC 3 cut(s) 247, 728, 966
BamHI GGATCC 1 cut(s) 122
BanI GGYRCC 3 cut(s) 4, 313, 484
BanII GRGCYC 1 cut(s) 1103
BauI CACGAG 1 cut(s) 638
BbsI GAAGAC 1 cut(s) 491
Bbv12I GWGCWC 2 cut(s) 420, 1103
BbvI GCAGC 2 cut(s) 79, 865
BccI CCATC 5 cut(s) 16, 79, 113, 719, 845
BciVI GTATCC 2 cut(s) 192, 254
BcoDI GTCTC 1 cut(s) 987
BfaI CTAG 4 cut(s) 341, 587, 671, 1104
BfoI RGCGCY 2 cut(s) 8, 155
BfuI GTATCC 2 cut(s) 192, 254
BisI GCNGC 4 cut(s) 68, 198, 483, 879
BlsI GCNGC 4 cut(s) 69, 199, 484, 880
Bme18I GGWCC 3 cut(s) 247, 728, 966
BmgBI CACGTC 1 cut(s) 676
BmgT120I GGNCC 3 cut(s) 247, 728, 966
BmiI GGNNCC 4 cut(s) 6, 124, 315, 486
BmsI GCATC 5 cut(s) 236, 526, 604, 997, 1015
BmtI GCTAGC 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 491
Bpu14I TTCGAA 1 cut(s) 522
BsaHI GRCGYC 3 cut(s) 5, 859, 1091
BsaJI CCNNGG 4 cut(s) 309, 334, 703, 939
BsaWI WCCGGW 1 cut(s) 502
BsaXI ACNNNNNCTCC 2 cut(s) 407, 437
Bsc4I CCNNNNNNNGG 2 cut(s) 310, 494
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 4 cut(s) 42, 269, 488, 1011
Bse3DI GCAATG 1 cut(s) 664
BseAI TCCGGA 1 cut(s) 502
BseDI CCNNGG 4 cut(s) 309, 334, 703, 939
BseLI CCNNNNNNNGG 2 cut(s) 310, 494
BseMI GCAATG 1 cut(s) 664
BseNI ACTGG 4 cut(s) 42, 269, 488, 1011
BseX3I CGGCCG 1 cut(s) 544
BseXI GCAGC 2 cut(s) 79, 865
BsgI GTGCAG 1 cut(s) 86
Bsh1285I CGRYCG 1 cut(s) 547
BshFI GGCC 3 cut(s) 20, 284, 546
BshNI GGYRCC 3 cut(s) 4, 313, 484
BsiEI CGRYCG 1 cut(s) 547
BsiHKAI GWGCWC 2 cut(s) 420, 1103
BsiSI CCGG 3 cut(s) 95, 503, 543
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 2 cut(s) 310, 494
BsmAI GTCTC 1 cut(s) 987
BsmFI GGGAC 1 cut(s) 375
BsmI GAATGC 1 cut(s) 446
BsnI GGCC 3 cut(s) 20, 284, 546
Bsp119I TTCGAA 1 cut(s) 522
Bsp1286I GDGCHC 2 cut(s) 420, 1103
Bsp13I TCCGGA 1 cut(s) 502
Bsp143I GATC 4 cut(s) 122, 168, 211, 276
BspACI CCGC 5 cut(s) 130, 197, 482, 787, 964
BspANI GGCC 3 cut(s) 20, 284, 546
BspEI TCCGGA 1 cut(s) 502
BspLI GGNNCC 4 cut(s) 6, 124, 315, 486
BspOI GCTAGC 1 cut(s) 344
BspPI GGATC 2 cut(s) 117, 130
BspT104I TTCGAA 1 cut(s) 522
BspT107I GGYRCC 3 cut(s) 4, 313, 484
BsrBI CCGCTC 1 cut(s) 787
BsrDI GCAATG 1 cut(s) 664
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 4 cut(s) 42, 269, 488, 1011
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 4 cut(s) 309, 334, 703, 939
BssMI GATC 4 cut(s) 122, 168, 211, 276
BssNI GRCGYC 3 cut(s) 5, 859, 1091
BssSI CACGAG 1 cut(s) 638
BssT1I CCWWGG 3 cut(s) 309, 334, 939
Bst2BI CACGAG 1 cut(s) 638
Bst4CI ACNGT 2 cut(s) 519, 900
BstACI GRCGYC 3 cut(s) 5, 859, 1091
BstAPI GCANNNNNTGC 3 cut(s) 479, 691, 1007
BstBI TTCGAA 1 cut(s) 522
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 1 cut(s) 1128
BstH2I RGCGCY 2 cut(s) 8, 155
BstHHI GCGC 5 cut(s) 7, 94, 154, 327, 1001
BstKTI GATC 4 cut(s) 125, 171, 214, 279
BstMAI GTCTC 1 cut(s) 987
BstMBI GATC 4 cut(s) 122, 168, 211, 276
BstMCI CGRYCG 1 cut(s) 547
BstMWI GCNNNNNNNGC 5 cut(s) 322, 479, 691, 784, 1007
BstV1I GCAGC 2 cut(s) 79, 865
BstV2I GAAGAC 1 cut(s) 491
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
BstZI CGGCCG 1 cut(s) 544
BsuI GTATCC 2 cut(s) 192, 254
BsuRI GGCC 3 cut(s) 20, 284, 546
BtrI CACGTC 1 cut(s) 676
BtsI GCAGTG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 477, 495
Cac8I GCNNGC 1 cut(s) 342
CaiI CAGNNNCTG 1 cut(s) 479
CfoI GCGC 5 cut(s) 7, 94, 154, 327, 1001
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 3 cut(s) 247, 728, 966
CpoI CGGWCCG 1 cut(s) 966
CseI GACGC 1 cut(s) 1080
Csp6I GTAC 2 cut(s) 980, 1063
CspI CGGWCCG 1 cut(s) 966
CviAII CATG 2 cut(s) 127, 812
CviQI GTAC 2 cut(s) 980, 1063
DdeI CTNAG 1 cut(s) 1128
DinI GGCGCC 1 cut(s) 6
DpnI GATC 4 cut(s) 124, 170, 213, 278
DpnII GATC 4 cut(s) 122, 168, 211, 276
DrdI GACNNNNNNGTC 1 cut(s) 1090
DseDI GACNNNNNNGTC 1 cut(s) 1090
EaeI YGGCCR 2 cut(s) 18, 544
EagI CGGCCG 1 cut(s) 544
EciI GGCGGA 1 cut(s) 979
Ecl136II GAGCTC 1 cut(s) 1101
EclXI CGGCCG 1 cut(s) 544
Eco130I CCWWGG 3 cut(s) 309, 334, 939
Eco24I GRGCYC 1 cut(s) 1103
Eco47I GGWCC 3 cut(s) 247, 728, 966
Eco47III AGCGCT 1 cut(s) 153
Eco52I CGGCCG 1 cut(s) 544
Eco53kI GAGCTC 1 cut(s) 1101
Eco57I CTGAAG 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 1101
EcoT14I CCWWGG 3 cut(s) 309, 334, 939
EcoT38I GRGCYC 1 cut(s) 1103
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 3 cut(s) 309, 334, 939
FaeI CATG 2 cut(s) 130, 815
FaiI YATR 7 cut(s) 63, 87, 128, 287, 365, 723, 813
FaqI GGGAC 1 cut(s) 375
FatI CATG 2 cut(s) 126, 811
Fnu4HI GCNGC 4 cut(s) 68, 198, 483, 879
FriOI GRGCYC 1 cut(s) 1103
Fsp4HI GCNGC 4 cut(s) 68, 198, 483, 879
FspBI CTAG 4 cut(s) 341, 587, 671, 1104
GlaI GCGC 5 cut(s) 6, 93, 153, 326, 1000
GluI GCNGC 4 cut(s) 68, 198, 483, 879
HaeII RGCGCY 2 cut(s) 8, 155
HaeIII GGCC 3 cut(s) 20, 284, 546
HapII CCGG 3 cut(s) 95, 503, 543
HgaI GACGC 1 cut(s) 1080
HhaI GCGC 5 cut(s) 7, 94, 154, 327, 1001
Hin1I GRCGYC 3 cut(s) 5, 859, 1091
Hin1II CATG 2 cut(s) 130, 815
Hin6I GCGC 5 cut(s) 5, 92, 152, 325, 999
HinP1I GCGC 5 cut(s) 5, 92, 152, 325, 999
HincII GTYRAC 1 cut(s) 863
HindII GTYRAC 1 cut(s) 863
HinfI GANTC 5 cut(s) 360, 388, 661, 796, 958
HpaII CCGG 3 cut(s) 95, 503, 543
HphI GGTGA 3 cut(s) 175, 397, 692
Hpy166II GTNNAC 4 cut(s) 529, 700, 857, 863
Hpy188I TCNGA 6 cut(s) 13, 108, 357, 711, 804, 894
Hpy188III TCNNGA 4 cut(s) 172, 503, 511, 638
Hpy8I GTNNAC 4 cut(s) 529, 700, 857, 863
Hpy99I CGWCG 4 cut(s) 1084, 1087, 1096, 1099
HpyAV CCTTC 4 cut(s) 406, 460, 604, 637
HpyCH4III ACNGT 2 cut(s) 519, 900
HpyCH4IV ACGT 3 cut(s) 625, 675, 859
HpyCH4V TGCA 4 cut(s) 67, 571, 716, 1028
HpyF10VI GCNNNNNNNGC 5 cut(s) 322, 479, 691, 784, 1007
HpyF3I CTNAG 1 cut(s) 1128
HpySE526I ACGT 3 cut(s) 625, 675, 859
Hsp92I GRCGYC 3 cut(s) 5, 859, 1091
Hsp92II CATG 2 cut(s) 130, 815
HspAI GCGC 5 cut(s) 5, 92, 152, 325, 999
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 502
Kzo9I GATC 4 cut(s) 122, 168, 211, 276
LmnI GCTCC 2 cut(s) 415, 886
Lsp1109I GCAGC 2 cut(s) 79, 865
LweI GCATC 5 cut(s) 236, 526, 604, 997, 1015
MaeI CTAG 4 cut(s) 341, 587, 671, 1104
MaeII ACGT 3 cut(s) 625, 675, 859
MaeIII GTNAC 2 cut(s) 163, 475
MalI GATC 4 cut(s) 124, 170, 213, 278
MbiI CCGCTC 1 cut(s) 787
MboI GATC 4 cut(s) 122, 168, 211, 276
MboII GAAGA 7 cut(s) 121, 286, 470, 491, 805, 931, 967
MflI RGATCY 1 cut(s) 122
MhlI GDGCHC 2 cut(s) 420, 1103
MluCI AATT 4 cut(s) 23, 346, 370, 605
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 2 cut(s) 30, 827
MroI TCCGGA 1 cut(s) 502
MroXI GAANNNNTTC 1 cut(s) 518
MseI TTAA 4 cut(s) 156, 407, 773, 903
MslI CAYNNNNRTG 3 cut(s) 131, 311, 534
MspI CCGG 3 cut(s) 95, 503, 543
Mva1269I GAATGC 1 cut(s) 446
MwoI GCNNNNNNNGC 5 cut(s) 322, 479, 691, 784, 1007
NarI GGCGCC 1 cut(s) 5
NdeII GATC 4 cut(s) 122, 168, 211, 276
NheI GCTAGC 1 cut(s) 340
NlaIII CATG 2 cut(s) 130, 815
NlaIV GGNNCC 4 cut(s) 6, 124, 315, 486
NmeAIII GCCGAG 1 cut(s) 572
NmuCI GTSAC 2 cut(s) 163, 475
NspV TTCGAA 1 cut(s) 522
OliI CACNNNNGTG 1 cut(s) 311
PcsI WCGNNNNNNNCGW 2 cut(s) 1088, 1091
PctI GAATGC 1 cut(s) 446
PdmI GAANNNNTTC 1 cut(s) 518
PfeI GAWTC 4 cut(s) 360, 661, 796, 958
PflFI GACNNNGTC 1 cut(s) 845
PkrI GCNGC 4 cut(s) 69, 199, 484, 880
PleI GAGTC 1 cut(s) 396
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 396
Psp124BI GAGCTC 1 cut(s) 1103
Psp1406I AACGTT 1 cut(s) 625
PspN4I GGNNCC 4 cut(s) 6, 124, 315, 486
PspPI GGNCC 3 cut(s) 247, 728, 966
PstNI CAGNNNCTG 1 cut(s) 479
PsuI RGATCY 1 cut(s) 122
PsyI GACNNNGTC 1 cut(s) 845
RsaI GTAC 2 cut(s) 981, 1064
RsaNI GTAC 2 cut(s) 980, 1063
RseI CAYNNNNRTG 3 cut(s) 131, 311, 534
Rsr2I CGGWCCG 1 cut(s) 966
RsrII CGGWCCG 1 cut(s) 966
SacI GAGCTC 1 cut(s) 1103
SaqAI TTAA 4 cut(s) 156, 407, 773, 903
SatI GCNGC 4 cut(s) 68, 198, 483, 879
Sau3AI GATC 4 cut(s) 122, 168, 211, 276
Sau96I GGNCC 3 cut(s) 247, 728, 966
SchI GAGTC 1 cut(s) 397
SduI GDGCHC 2 cut(s) 420, 1103
SfaNI GCATC 5 cut(s) 236, 526, 604, 997, 1015
SfoI GGCGCC 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 522
SinI GGWCC 3 cut(s) 247, 728, 966
SmiMI CAYNNNNRTG 3 cut(s) 131, 311, 534
Sse9I AATT 4 cut(s) 23, 346, 370, 605
SsiI CCGC 5 cut(s) 130, 197, 482, 787, 964
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 4 cut(s) 341, 587, 671, 1104
SstI GAGCTC 1 cut(s) 1103
StyI CCWWGG 3 cut(s) 309, 334, 939
TaaI ACNGT 2 cut(s) 519, 900
TaiI ACGT 3 cut(s) 628, 678, 862
TaqI TCGA 5 cut(s) 148, 522, 735, 849, 1097
TaqII GACCGA 1 cut(s) 983
TasI AATT 4 cut(s) 23, 346, 370, 605
TauI GCSGC 2 cut(s) 200, 485
TfiI GAWTC 4 cut(s) 360, 661, 796, 958
Tru1I TTAA 4 cut(s) 156, 407, 773, 903
Tru9I TTAA 4 cut(s) 156, 407, 773, 903
TscAI CASTG 2 cut(s) 484, 495
TseFI GTSAC 2 cut(s) 163, 475
TseI GCWGC 2 cut(s) 67, 878
Tsp45I GTSAC 2 cut(s) 163, 475
TspDTI ATGAA 3 cut(s) 352, 653, 788
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 2 cut(s) 484, 495
Tth111I GACNNNGTC 1 cut(s) 845
VpaK11BI GGWCC 3 cut(s) 247, 728, 966
XmnI GAANNNNTTC 1 cut(s) 518
XspI CTAG 4 cut(s) 341, 587, 671, 1104
ZraI GACGTC 1 cut(s) 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.