transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 1 - 81 | 7.8e-20 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 478 |
| AccBSI | CCGCTC | 1 cut(s) | 451 |
| AciI | CCGC | 1 cut(s) | 451 |
| AclI | AACGTT | 1 cut(s) | 32 |
| AcuI | CTGAAG | 2 cut(s) | 43, 273 |
| AcyI | GRCGYC | 1 cut(s) | 475 |
| AdeI | CACNNNGTG | 1 cut(s) | 201 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 327, 343 |
| AflIII | ACRYGT | 1 cut(s) | 238 |
| AgeI | ACCGGT | 1 cut(s) | 75 |
| AgsI | TTSAA | 1 cut(s) | 461 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 213, 245 |
| AluBI | AGCT | 4 cut(s) | 228, 269, 333, 466 |
| AluI | AGCT | 4 cut(s) | 228, 269, 333, 466 |
| Alw21I | GWGCWC | 1 cut(s) | 135 |
| Alw26I | GTCTC | 1 cut(s) | 482 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 181 |
| AsiGI | ACCGGT | 1 cut(s) | 75 |
| AspA2I | CCTAGG | 1 cut(s) | 337 |
| AspS9I | GGNCC | 1 cut(s) | 73 |
| AsuHPI | GGTGA | 2 cut(s) | 187, 337 |
| AvaII | GGWCC | 1 cut(s) | 73 |
| AvrII | CCTAGG | 1 cut(s) | 337 |
| BbsI | GAAGAC | 1 cut(s) | 49 |
| Bbv12I | GWGCWC | 1 cut(s) | 135 |
| BcoDI | GTCTC | 1 cut(s) | 482 |
| BfaI | CTAG | 1 cut(s) | 338 |
| BlnI | CCTAGG | 1 cut(s) | 337 |
| Bme18I | GGWCC | 1 cut(s) | 73 |
| BmgT120I | GGNCC | 1 cut(s) | 73 |
| BpiI | GAAGAC | 1 cut(s) | 49 |
| Bsa29I | ATCGAT | 1 cut(s) | 96 |
| BsaHI | GRCGYC | 1 cut(s) | 475 |
| BsaJI | CCNNGG | 3 cut(s) | 308, 321, 337 |
| BsaWI | WCCGGW | 1 cut(s) | 75 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 7, 37, 410, 440 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 327, 343 |
| Bse118I | RCCGGY | 1 cut(s) | 75 |
| BseCI | ATCGAT | 1 cut(s) | 96 |
| BseDI | CCNNGG | 3 cut(s) | 308, 321, 337 |
| BseGI | GGATG | 1 cut(s) | 442 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 327, 343 |
| BseMII | CTCAG | 2 cut(s) | 287, 393 |
| BseRI | GAGGAG | 3 cut(s) | 143, 261, 343 |
| BsgI | GTGCAG | 1 cut(s) | 389 |
| BshTI | ACCGGT | 1 cut(s) | 75 |
| BshVI | ATCGAT | 1 cut(s) | 96 |
| BsiHKAI | GWGCWC | 1 cut(s) | 135 |
| BsiSI | CCGG | 1 cut(s) | 76 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 327, 343 |
| BsmAI | GTCTC | 1 cut(s) | 482 |
| BsmBI | CGTCTC | 1 cut(s) | 482 |
| Bsp1286I | GDGCHC | 1 cut(s) | 135 |
| BspACI | CCGC | 1 cut(s) | 451 |
| BspCNI | CTCAG | 2 cut(s) | 286, 392 |
| BspDI | ATCGAT | 1 cut(s) | 96 |
| BsrBI | CCGCTC | 1 cut(s) | 451 |
| BsrFI | RCCGGY | 1 cut(s) | 75 |
| BssAI | RCCGGY | 1 cut(s) | 75 |
| BssECI | CCNNGG | 3 cut(s) | 308, 321, 337 |
| BssNI | GRCGYC | 1 cut(s) | 475 |
| BssT1I | CCWWGG | 1 cut(s) | 337 |
| Bst4CI | ACNGT | 1 cut(s) | 183 |
| BstACI | GRCGYC | 1 cut(s) | 475 |
| BstC8I | GCNNGC | 1 cut(s) | 349 |
| BstDEI | CTNAG | 3 cut(s) | 189, 273, 379 |
| BstF5I | GGATG | 1 cut(s) | 442 |
| BstMAI | GTCTC | 1 cut(s) | 482 |
| BstNSI | RCATGY | 1 cut(s) | 242 |
| BstV2I | GAAGAC | 1 cut(s) | 49 |
| Bsu15I | ATCGAT | 1 cut(s) | 96 |
| BsuTUI | ATCGAT | 1 cut(s) | 96 |
| BtsCI | GGATG | 1 cut(s) | 442 |
| Cac8I | GCNNGC | 1 cut(s) | 349 |
| CaiI | CAGNNNCTG | 1 cut(s) | 181 |
| Cfr10I | RCCGGY | 1 cut(s) | 75 |
| Cfr13I | GGNCC | 1 cut(s) | 73 |
| ClaI | ATCGAT | 1 cut(s) | 96 |
| CspAI | ACCGGT | 1 cut(s) | 75 |
| CviAII | CATG | 3 cut(s) | 37, 239, 297 |
| CviJI | RGCY | 8 cut(s) | 214, 228, 251, 269, 333, 347, 351, 466 |
| CviKI_1 | RGCY | 8 cut(s) | 214, 228, 251, 269, 333, 347, 351, 466 |
| DdeI | CTNAG | 3 cut(s) | 189, 273, 379 |
| DraIII | CACNNNGTG | 1 cut(s) | 201 |
| Eco130I | CCWWGG | 1 cut(s) | 337 |
| Eco47I | GGWCC | 1 cut(s) | 73 |
| Eco57I | CTGAAG | 2 cut(s) | 43, 273 |
| EcoT14I | CCWWGG | 1 cut(s) | 337 |
| ErhI | CCWWGG | 1 cut(s) | 337 |
| Esp3I | CGTCTC | 1 cut(s) | 482 |
| FaeI | CATG | 3 cut(s) | 40, 242, 300 |
| FaiI | YATR | 5 cut(s) | 38, 67, 186, 240, 298 |
| FatI | CATG | 3 cut(s) | 36, 238, 296 |
| FokI | GGATG | 1 cut(s) | 449 |
| FspBI | CTAG | 1 cut(s) | 338 |
| HapII | CCGG | 1 cut(s) | 76 |
| Hin1I | GRCGYC | 1 cut(s) | 475 |
| Hin1II | CATG | 3 cut(s) | 40, 242, 300 |
| HinfI | GANTC | 2 cut(s) | 54, 409 |
| HpaII | CCGG | 1 cut(s) | 76 |
| HphI | GGTGA | 2 cut(s) | 187, 337 |
| Hpy166II | GTNNAC | 1 cut(s) | 195 |
| Hpy188I | TCNGA | 5 cut(s) | 11, 62, 108, 276, 414 |
| Hpy188III | TCNNGA | 2 cut(s) | 71, 461 |
| Hpy8I | GTNNAC | 1 cut(s) | 195 |
| Hpy99I | CGWCG | 2 cut(s) | 363, 477 |
| HpyAV | CCTTC | 3 cut(s) | 248, 271, 409 |
| HpyCH4III | ACNGT | 1 cut(s) | 183 |
| HpyCH4IV | ACGT | 3 cut(s) | 32, 361, 475 |
| HpyCH4V | TGCA | 2 cut(s) | 29, 370 |
| HpyF3I | CTNAG | 3 cut(s) | 189, 273, 379 |
| HpySE526I | ACGT | 3 cut(s) | 32, 361, 475 |
| Hsp92I | GRCGYC | 1 cut(s) | 475 |
| Hsp92II | CATG | 3 cut(s) | 40, 242, 300 |
| LmnI | GCTCC | 5 cut(s) | 28, 130, 274, 301, 330 |
| LpnPI | CCDG | 8 cut(s) | 39, 56, 89, 121, 143, 329, 333, 356 |
| MaeI | CTAG | 1 cut(s) | 338 |
| MaeII | ACGT | 3 cut(s) | 32, 361, 475 |
| MaeIII | GTNAC | 1 cut(s) | 316 |
| MbiI | CCGCTC | 1 cut(s) | 451 |
| MboII | GAAGA | 2 cut(s) | 49, 452 |
| MfeI | CAATTG | 1 cut(s) | 384 |
| MhlI | GDGCHC | 1 cut(s) | 135 |
| MluCI | AATT | 2 cut(s) | 258, 384 |
| MlyI | GAGTC | 1 cut(s) | 63 |
| MnlI | CCTC | 6 cut(s) | 121, 282, 303, 316, 321, 412 |
| MseI | TTAA | 4 cut(s) | 146, 216, 429, 484 |
| MspI | CCGG | 1 cut(s) | 76 |
| MunI | CAATTG | 1 cut(s) | 384 |
| NlaIII | CATG | 3 cut(s) | 40, 242, 300 |
| NspI | RCATGY | 1 cut(s) | 242 |
| PciI | ACATGT | 1 cut(s) | 238 |
| PfeI | GAWTC | 1 cut(s) | 409 |
| PinAI | ACCGGT | 1 cut(s) | 75 |
| PleI | GAGTC | 1 cut(s) | 62 |
| PpsI | GAGTC | 1 cut(s) | 62 |
| PscI | ACATGT | 1 cut(s) | 238 |
| Psp1406I | AACGTT | 1 cut(s) | 32 |
| PspPI | GGNCC | 1 cut(s) | 73 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 176, 208 |
| PstNI | CAGNNNCTG | 1 cut(s) | 181 |
| SaqAI | TTAA | 4 cut(s) | 146, 216, 429, 484 |
| Sau96I | GGNCC | 1 cut(s) | 73 |
| SchI | GAGTC | 1 cut(s) | 63 |
| SduI | GDGCHC | 1 cut(s) | 135 |
| SinI | GGWCC | 1 cut(s) | 73 |
| Sse9I | AATT | 2 cut(s) | 258, 384 |
| SsiI | CCGC | 1 cut(s) | 451 |
| SspMI | CTAG | 1 cut(s) | 338 |
| StyI | CCWWGG | 1 cut(s) | 337 |
| TaaI | ACNGT | 1 cut(s) | 183 |
| TaiI | ACGT | 3 cut(s) | 35, 364, 478 |
| TaqI | TCGA | 1 cut(s) | 96 |
| TasI | AATT | 2 cut(s) | 258, 384 |
| TfiI | GAWTC | 1 cut(s) | 409 |
| Tru1I | TTAA | 4 cut(s) | 146, 216, 429, 484 |
| Tru9I | TTAA | 4 cut(s) | 146, 216, 429, 484 |
| TspDTI | ATGAA | 4 cut(s) | 25, 62, 82, 453 |
| VpaK11BI | GGWCC | 1 cut(s) | 73 |
| XceI | RCATGY | 1 cut(s) | 242 |
| XmaJI | CCTAGG | 1 cut(s) | 337 |
| XspI | CTAG | 1 cut(s) | 338 |
| ZraI | GACGTC | 1 cut(s) | 476 |