Rw0G002280

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00072
OG0000094
Physical Location & Seq
Forward (+)
173169 .. 174257
1089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G002280.1

Sequence Viewer

Length: 1053 bp
ATGGCTCGAAATCGCCGAGCACGTGAGAGAACTCCGATTGGGGAAGATGAGCCGTTACCTAGGGGATTCGCGGATTCCTTTGGACAGTTCTTTAGGCAGATTGCCGCAGCACTCCCCGGGCATGGGGCTCAGACTTTTACTTCAGCCGCCTCACCTGTAGAGGCTCAGCGGTGGATTGACAGGATGGAGAGAGTTTTCTCCCAGATGGACCTTCCAGAGGATAGGAAAGTGACTTTGGCGGTACAGTTTCTAGAGGATACCGCATGGCATTGGTGGGTTGATGTATCAAATGACCCTGCAAATGTTGGCCCCATGACATGGGATATGTTCAAGACCCATTTCTATGGGCGGTACTTTAGTGATGCACACCTTAATCGGATGCAAGACCAGTTCTTGAGCTTAGTGAAGAGAGAGGATCAGTCAGTGTTGGAGTTTGAGCAGGAGTTTCTCTCCTTAGCCCACCATGTGCCGGATTTGGTTCGCACCGAGCAAAGCAAGATTCGTAGATTTGTTTTGGGACTCGGAGGCAGGTTTAAGGACAAGATGTTAGGCACACCGTATCGGAGCTTTGCGGAGGCAGTATCTTATGCCATGGACATTGAGTCTGACTCCCCTGCTGGATTCCACCCTAGGGATCCTGGTGGCCCTAGCCAGGGTCCATCTAAGAGGGCTACTTCCACATCTGGTTCTGGTTCTTCCGTTGGTAGTGGGAAGAGCAGTGGTTCCAGTTCGAGGATCCGTACTAGATTCAGGGGACGTGACAGGAGATTCTCTCGGGGTCAGTCTAGTGGACGACAGTTTGGACAGTTTGAGAGGTCCAGGAGTTATCATGGTGGTTCGAGTGGGGCTTCTGCTAGCCAGCCAGCCCAGTTTGGACAGTATCAGACAGCAGGATGTTTTATTTGTGGTCAGCAGGATCACTTCAGGAGGGATTGTCCCCTTGCGACTCAGGGAGCTAGATTTACCCCCACTCAGACTGTTGGTCAGTCCTCTGCTGGTGGTTCTACTAGCAGCGCCCGCACCAGCTCGGTAGGCCGAGCTAGTTCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04010 ko04011 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04011 map04013 map04022 map04371 map04921 map05202 map05418
Pfam Domains
Protein Families
HJURP_C SRF-TF

Protein Analysis

350

Amino Acids

38.74

Weight (kDa)

9.88

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 45 - 201 1.9e-08 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 79 - 174 5.1e-16 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 519
AccB7I CCANNNNNTGG 1 cut(s) 318
AccII CGCG 1 cut(s) 71
AciI CCGC 9 cut(s) 71, 105, 147, 169, 239, 261, 349, 572, 1018
AclWI GGATC 6 cut(s) 423, 629, 642, 730, 743, 924
AcuI CTGAAG 2 cut(s) 126, 907
AcvI CACGTG 1 cut(s) 23
AdeI CACNNNGTG 1 cut(s) 466
AfaI GTAC 3 cut(s) 243, 353, 742
AfiI CCNNNNNNNGG 9 cut(s) 122, 123, 217, 318, 469, 631, 652, 653, 732
AgsI TTSAA 1 cut(s) 331
AhdI GACNNNNNGTC 2 cut(s) 601, 981
AjiI CACGTC 1 cut(s) 758
AjnI CCWGG 3 cut(s) 637, 651, 818
AjuI GAANNNNNNNTTGG 2 cut(s) 218, 250
AluBI AGCT 5 cut(s) 399, 567, 956, 1026, 1040
AluI AGCT 5 cut(s) 399, 567, 956, 1026, 1040
Alw21I GWGCWC 1 cut(s) 22
AlwI GGATC 6 cut(s) 423, 629, 642, 730, 743, 924
Ama87I CYCGRG 2 cut(s) 116, 774
AoxI GGCC 3 cut(s) 307, 643, 1033
ApeKI GCWGC 2 cut(s) 107, 1011
AspA2I CCTAGG 2 cut(s) 59, 629
AspLEI GCGC 1 cut(s) 1016
AspS9I GGNCC 5 cut(s) 208, 308, 644, 656, 816
AsuC2I CCSGG 2 cut(s) 117, 118
AsuHPI GGTGA 1 cut(s) 144
AsuNHI GCTAGC 1 cut(s) 854
AvaI CYCGRG 2 cut(s) 116, 774
AvaII GGWCC 3 cut(s) 208, 656, 816
AvrII CCTAGG 2 cut(s) 59, 629
BaeI ACNNNNGTAYC 2 cut(s) 343, 376
BamHI GGATCC 2 cut(s) 634, 735
BanII GRGCYC 1 cut(s) 130
BbrPI CACGTG 1 cut(s) 23
Bbv12I GWGCWC 1 cut(s) 22
BbvI GCAGC 2 cut(s) 119, 1023
BccI CCATC 3 cut(s) 178, 199, 667
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 3 cut(s) 639, 653, 820
BciVI GTATCC 1 cut(s) 250
BcnI CCSGG 2 cut(s) 117, 118
BfmI CTRYAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 1017
BfuAI ACCTGC 1 cut(s) 519
BfuI GTATCC 1 cut(s) 250
BisI GCNGC 4 cut(s) 105, 108, 147, 1012
BlnI CCTAGG 2 cut(s) 59, 629
BlpI GCTNAGC 1 cut(s) 165
BlsI GCNGC 4 cut(s) 106, 109, 148, 1013
Bme1390I CCNGG 5 cut(s) 117, 118, 639, 653, 820
Bme18I GGWCC 3 cut(s) 208, 656, 816
BmeRI GACNNNNNGTC 2 cut(s) 601, 981
BmeT110I CYCGRG 2 cut(s) 116, 774
BmgBI CACGTC 1 cut(s) 758
BmgT120I GGNCC 5 cut(s) 208, 308, 644, 656, 816
BmiI GGNNCC 5 cut(s) 310, 636, 657, 724, 737
BmrFI CCNGG 5 cut(s) 117, 118, 639, 653, 820
BmrI ACTGGG 1 cut(s) 862
BmsI GCATC 2 cut(s) 352, 369
BmtI GCTAGC 1 cut(s) 858
BmuI ACTGGG 1 cut(s) 862
BplI GAGNNNNNCTC 6 cut(s) 434, 466, 593, 625, 757, 789
Bpu10I CCTNAGC 1 cut(s) 454
Bpu1102I GCTNAGC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 415
BpuMI CCSGG 2 cut(s) 117, 118
BsaAI YACGTR 1 cut(s) 23
BsaJI CCNNGG 6 cut(s) 59, 115, 116, 591, 629, 652
BsaXI ACNNNNNCTCC 2 cut(s) 919, 949
Bsc4I CCNNNNNNNGG 9 cut(s) 122, 123, 217, 318, 469, 631, 652, 653, 732
Bse1I ACTGG 3 cut(s) 388, 726, 868
BseBI CCWGG 3 cut(s) 639, 653, 820
BseDI CCNNGG 6 cut(s) 59, 115, 116, 591, 629, 652
BseGI GGATG 3 cut(s) 189, 384, 899
BseLI CCNNNNNNNGG 9 cut(s) 122, 123, 217, 318, 469, 631, 652, 653, 732
BseMII CTCAG 4 cut(s) 143, 179, 962, 986
BseNI ACTGG 3 cut(s) 388, 726, 868
BseXI GCAGC 2 cut(s) 119, 1023
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 3 cut(s) 309, 645, 1035
BsiHKAI GWGCWC 1 cut(s) 22
BsiHKCI CYCGRG 2 cut(s) 116, 774
BsiSI CCGG 2 cut(s) 117, 470
BslFI GGGAC 3 cut(s) 531, 768, 921
BslI CCNNNNNNNGG 9 cut(s) 122, 123, 217, 318, 469, 631, 652, 653, 732
BsmFI GGGAC 3 cut(s) 531, 768, 921
BsnI GGCC 3 cut(s) 309, 645, 1035
BsoBI CYCGRG 2 cut(s) 116, 774
Bsp1286I GDGCHC 2 cut(s) 22, 130
Bsp143I GATC 4 cut(s) 415, 634, 735, 916
Bsp1720I GCTNAGC 1 cut(s) 165
Bsp19I CCATGG 1 cut(s) 591
BspACI CCGC 9 cut(s) 71, 105, 147, 169, 239, 261, 349, 572, 1018
BspANI GGCC 3 cut(s) 309, 645, 1035
BspCNI CTCAG 4 cut(s) 142, 178, 961, 985
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 5 cut(s) 310, 636, 657, 724, 737
BspMI ACCTGC 1 cut(s) 519
BspOI GCTAGC 1 cut(s) 858
BspPI GGATC 6 cut(s) 423, 629, 642, 730, 743, 924
BspQI GCTCTTC 1 cut(s) 707
BsrI ACTGG 3 cut(s) 388, 726, 868
BssECI CCNNGG 6 cut(s) 59, 115, 116, 591, 629, 652
BssMI GATC 4 cut(s) 415, 634, 735, 916
BssT1I CCWWGG 3 cut(s) 59, 591, 629
Bst2UI CCWGG 3 cut(s) 639, 653, 820
Bst4CI ACNGT 7 cut(s) 87, 246, 558, 798, 807, 879, 979
Bst6I CTCTTC 2 cut(s) 401, 707
BstBAI YACGTR 1 cut(s) 23
BstC8I GCNNGC 4 cut(s) 856, 860, 864, 1018
BstDEI CTNAG 8 cut(s) 129, 165, 400, 454, 663, 948, 972, 1047
BstDSI CCRYGG 1 cut(s) 591
BstENI CCTNNNNNAGG 1 cut(s) 215
BstF5I GGATG 3 cut(s) 189, 384, 899
BstFNI CGCG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 1017
BstHHI GCGC 1 cut(s) 1016
BstKTI GATC 4 cut(s) 418, 637, 738, 919
BstMBI GATC 4 cut(s) 415, 634, 735, 916
BstMWI GCNNNNNNNGC 2 cut(s) 1017, 1032
BstNI CCWGG 3 cut(s) 639, 653, 820
BstSCI CCNGG 5 cut(s) 115, 116, 637, 651, 818
BstSFI CTRYAG 1 cut(s) 156
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 119, 1023
BstX2I RGATCY 2 cut(s) 634, 735
BstXI CCANNNNNNTGG 1 cut(s) 344
BstYI RGATCY 2 cut(s) 634, 735
BsuI GTATCC 1 cut(s) 250
BsuRI GGCC 3 cut(s) 309, 645, 1035
BtgI CCRYGG 1 cut(s) 591
BtrI CACGTC 1 cut(s) 758
BtsCI GGATG 3 cut(s) 189, 384, 899
BtsI GCAGTG 1 cut(s) 724
BtsIMutI CAGTG 2 cut(s) 429, 724
BveI ACCTGC 1 cut(s) 519
Cac8I GCNNGC 4 cut(s) 856, 860, 864, 1018
CfoI GCGC 1 cut(s) 1016
Cfr13I GGNCC 5 cut(s) 208, 308, 644, 656, 816
Cfr9I CCCGGG 1 cut(s) 116
Csp6I GTAC 3 cut(s) 242, 352, 741
CviAII CATG 7 cut(s) 122, 264, 313, 318, 464, 592, 830
CviQI GTAC 3 cut(s) 242, 352, 741
DdeI CTNAG 8 cut(s) 129, 165, 400, 454, 663, 948, 972, 1047
DpnI GATC 4 cut(s) 417, 636, 737, 918
DpnII GATC 4 cut(s) 415, 634, 735, 916
DraIII CACNNNGTG 1 cut(s) 466
DriI GACNNNNNGTC 2 cut(s) 601, 981
Eam1104I CTCTTC 2 cut(s) 401, 707
Eam1105I GACNNNNNGTC 2 cut(s) 601, 981
EarI CTCTTC 2 cut(s) 401, 707
Eco130I CCWWGG 3 cut(s) 59, 591, 629
Eco24I GRGCYC 1 cut(s) 130
Eco47I GGWCC 3 cut(s) 208, 656, 816
Eco57I CTGAAG 2 cut(s) 126, 907
Eco72I CACGTG 1 cut(s) 23
Eco88I CYCGRG 2 cut(s) 116, 774
EcoNI CCTNNNNNAGG 1 cut(s) 215
EcoRII CCWGG 3 cut(s) 637, 651, 818
EcoT14I CCWWGG 3 cut(s) 59, 591, 629
EcoT38I GRGCYC 1 cut(s) 130
ErhI CCWWGG 3 cut(s) 59, 591, 629
FaeI CATG 7 cut(s) 125, 267, 316, 321, 467, 595, 833
FaqI GGGAC 3 cut(s) 531, 768, 921
FatI CATG 7 cut(s) 121, 263, 312, 317, 463, 591, 829
FauI CCCGC 1 cut(s) 1025
Fnu4HI GCNGC 4 cut(s) 105, 108, 147, 1012
FokI GGATG 3 cut(s) 196, 391, 906
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 4 cut(s) 105, 108, 147, 1012
GlaI GCGC 1 cut(s) 1015
GluI GCNGC 4 cut(s) 105, 108, 147, 1012
HaeII RGCGCY 1 cut(s) 1017
HaeIII GGCC 3 cut(s) 309, 645, 1035
HapII CCGG 2 cut(s) 117, 470
HhaI GCGC 1 cut(s) 1016
Hin1II CATG 7 cut(s) 125, 267, 316, 321, 467, 595, 833
Hin6I GCGC 1 cut(s) 1014
HinP1I GCGC 1 cut(s) 1014
HpaII CCGG 2 cut(s) 117, 470
HphI GGTGA 1 cut(s) 144
Hpy166II GTNNAC 1 cut(s) 791
Hpy188I TCNGA 8 cut(s) 36, 132, 378, 524, 564, 607, 885, 975
Hpy188III TCNNGA 5 cut(s) 215, 251, 331, 394, 925
Hpy8I GTNNAC 1 cut(s) 791
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 7 cut(s) 87, 246, 558, 798, 807, 879, 979
HpyCH4IV ACGT 2 cut(s) 22, 757
HpyCH4V TGCA 3 cut(s) 299, 365, 382
HpyF10VI GCNNNNNNNGC 2 cut(s) 1017, 1032
HpyF3I CTNAG 8 cut(s) 129, 165, 400, 454, 663, 948, 972, 1047
HpySE526I ACGT 2 cut(s) 22, 757
Hsp92II CATG 7 cut(s) 125, 267, 316, 321, 467, 595, 833
HspAI GCGC 1 cut(s) 1014
Kzo9I GATC 4 cut(s) 415, 634, 735, 916
LguI GCTCTTC 1 cut(s) 707
LmnI GCTCC 2 cut(s) 564, 953
Lsp1109I GCAGC 2 cut(s) 119, 1023
LweI GCATC 2 cut(s) 352, 369
MaeII ACGT 2 cut(s) 22, 757
MaeIII GTNAC 3 cut(s) 54, 229, 758
MalI GATC 4 cut(s) 417, 636, 737, 918
MboI GATC 4 cut(s) 415, 634, 735, 916
MboII GAAGA 4 cut(s) 56, 418, 687, 724
MflI RGATCY 2 cut(s) 634, 735
MhlI GDGCHC 2 cut(s) 22, 130
MlyI GAGTC 4 cut(s) 513, 602, 611, 940
MmeI TCCRAC 1 cut(s) 408
MseI TTAA 2 cut(s) 372, 534
MslI CAYNNNNRTG 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 2 cut(s) 117, 470
MspR9I CCNGG 5 cut(s) 117, 118, 639, 653, 820
MvaI CCWGG 3 cut(s) 639, 653, 820
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 1017, 1032
NciI CCSGG 2 cut(s) 117, 118
NcoI CCATGG 1 cut(s) 591
NdeII GATC 4 cut(s) 415, 634, 735, 916
NheI GCTAGC 1 cut(s) 854
NlaIII CATG 7 cut(s) 125, 267, 316, 321, 467, 595, 833
NlaIV GGNNCC 5 cut(s) 310, 636, 657, 724, 737
NmeAIII GCCGAG 1 cut(s) 41
NmuCI GTSAC 2 cut(s) 229, 758
PciSI GCTCTTC 1 cut(s) 707
PcsI WCGNNNNNNNCGW 2 cut(s) 13, 19
PfeI GAWTC 6 cut(s) 66, 74, 499, 621, 747, 768
PflMI CCANNNNNTGG 1 cut(s) 318
PfoI TCCNGGA 1 cut(s) 818
PkrI GCNGC 4 cut(s) 106, 109, 148, 1013
PleI GAGTC 4 cut(s) 513, 602, 610, 940
PmaCI CACGTG 1 cut(s) 23
PmlI CACGTG 1 cut(s) 23
PpsI GAGTC 4 cut(s) 513, 602, 610, 940
Ppu21I YACGTR 1 cut(s) 23
Psp6I CCWGG 3 cut(s) 637, 651, 818
PspCI CACGTG 1 cut(s) 23
PspGI CCWGG 3 cut(s) 637, 651, 818
PspN4I GGNNCC 5 cut(s) 310, 636, 657, 724, 737
PspPI GGNCC 5 cut(s) 208, 308, 644, 656, 816
PsuI RGATCY 2 cut(s) 634, 735
RsaI GTAC 3 cut(s) 243, 353, 742
RsaNI GTAC 3 cut(s) 242, 352, 741
RseI CAYNNNNRTG 1 cut(s) 342
SapI GCTCTTC 1 cut(s) 707
SaqAI TTAA 2 cut(s) 372, 534
SatI GCNGC 4 cut(s) 105, 108, 147, 1012
Sau3AI GATC 4 cut(s) 415, 634, 735, 916
Sau96I GGNCC 5 cut(s) 208, 308, 644, 656, 816
SchI GAGTC 4 cut(s) 513, 602, 611, 940
ScrFI CCNGG 5 cut(s) 117, 118, 639, 653, 820
SduI GDGCHC 2 cut(s) 22, 130
SfaNI GCATC 2 cut(s) 352, 369
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 3 cut(s) 208, 656, 816
SmaI CCCGGG 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 342
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
SsiI CCGC 9 cut(s) 71, 105, 147, 169, 239, 261, 349, 572, 1018
StyD4I CCNGG 5 cut(s) 115, 116, 637, 651, 818
StyI CCWWGG 3 cut(s) 59, 591, 629
TaaI ACNGT 7 cut(s) 87, 246, 558, 798, 807, 879, 979
TaiI ACGT 2 cut(s) 25, 760
TaqI TCGA 3 cut(s) 7, 731, 839
TauI GCSGC 2 cut(s) 107, 149
TfiI GAWTC 6 cut(s) 66, 74, 499, 621, 747, 768
Tru1I TTAA 2 cut(s) 372, 534
Tru9I TTAA 2 cut(s) 372, 534
TscAI CASTG 2 cut(s) 429, 724
TseFI GTSAC 2 cut(s) 229, 758
TseI GCWGC 2 cut(s) 107, 1011
Tsp45I GTSAC 2 cut(s) 229, 758
TspGWI ACGGA 2 cut(s) 688, 728
TspMI CCCGGG 1 cut(s) 116
TspRI CASTG 2 cut(s) 429, 724
Van91I CCANNNNNTGG 1 cut(s) 318
VpaK11BI GGWCC 3 cut(s) 208, 656, 816
XagI CCTNNNNNAGG 1 cut(s) 215
XbaI TCTAGA 1 cut(s) 250
XmaI CCCGGG 1 cut(s) 116
XmaJI CCTAGG 2 cut(s) 59, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.