Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000094

Physical Location & Seq

Genomic Coordinates Forward (+)

38260547 .. 38263388

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G025510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1956 bp

ATGGCCCGTCTGCAGCGGATCCCCATCATATGCTCTTCGGTGATGGACCCTCAAGGAGGCAGAGCTAGGGGTCGAGGTAGACCCAGAGGCAGGGGTAGAGCCCGAGGTAGGGGCAGGATTCCTCCTCCTGTTGAGGAGATATTCGAGGATGAAGTTGAGGCATCAAATGTTGAGTTGCCTGTTCCACCTGTGGTGGAGGTTGCTAACGTTGTAGATCCTACTCTGAAGGAGCAGATGGAAAGGGAATTCATCTCGTTAGTCCAAGGGACTAAGAGTGTGAGGGAGTATGAAGCTGAGTTCTCAAGGTTGTATCGCTTTACGGTGGAGCTCATTTTCGTTAAGGCTATGGCCATTGAGCAGGAGAACTTGACTCTCCAAGAACACGAATCAGCTGAGAGGGATTTCCAAAGAAAGGGAAAGGCAACTGCGGGGAGCAGTAAGGCATCTGAGAATCGAGGTGGGTTCTGGAAGAGACAGAGGACTGATCAGCAGGCACCAGCTAGGGCTGCAGTTGCACCTGCTAGGGTTGCACCTAATAGGCCGGTGGCGAACCCGAAGTGTTTCAATTGCAATGAGATGGGCCATGTTGCTCGAGCTTGCACGAAACCTAAGAACTTGGCATGCTTCACATGTGGCCAGATGGGGCACTTCTCAAGGGATTGTACCCAGCAGGGTAGGGGACAAGGGAATCAGCAGAGGCATCTACCTCAAGGAAATGCTAGGGTGGTGTTATTTGATACGGGAGCGTCCCACTCTTTCATATCTAGTTCTGTGGTTGATATGTTAGGTTTAACTCCTAGGCCTCTTGCTAGATCCTTGTGTGTTATTTCCCCACTTGGTGTTTCCCTTGAGCTTGATAAGTTTTGTGATGCTTGTCCAATTGTGATTGGTGGTAAGGAGTTTACCGCGGCCTTGATTTTATTAGCAGATCATAAGTATGATGTCATTTTGGGTATTGATTGGCTGAGGCCAAATCATGCTATGATTGATTGCTTTGAAATGGTAGTGTCATTTCATATACCTGGACAGCCGGTGTTTCGTTATCGTGATGTATTTCAGGAAATACCAGGATTACCTCCAAGAAGGGAAGTGGATTTTGCTATCGATGTGATACCAGGTACTGCACCTCAAGGGTTCATTAGACCTAGTACTTCTCCTTGGGGTGCACCTGTGGTGTTTGCGAAGAAGAAGGATGCTTCACTAAGGTTGTGTGTGGATTATCGGCAGTTGAACAAGGTGACAATTAAGAATAGGTACCCTTTTCCTAGGATTGATGACTTGTTCGACCAGCTTAAGGGAGCTGCTGTATTCTCGAAGATCGATTTGAGATCCGGATATCACCAGTTGAGGGTGAAAGATGATGATGTTCCTAAGACTGCTTTTAGGACTAGGTATGGACACTTTGAGTTTGTTGTCATGCCTTTTGGTTTAACCAATGCACCTGCAGCCTTTATGGACTTGATGAACCGTATGTTCAGTCCGTATTTGGATAAGTTTGTGGTAGTGTTCGTGGATGATATTTTGGTTTATTCCAAGACGTTGGAGGACCATGATAAGCATCTGCGGATTTTGCTACAACTTTTGAAAGAAAAGGAATTGTTTGCGAAATTCGAGAAGTGCGAATTTTGGCAAAGGGAGGTCAAGTTCCTTGGTCATGTAATTTCGAAGGATGGAATCTCGGTGGATCCTTCTAAGGTGGAAGCAGTGATGAACTGGGGCCAACCCACTACAGTTACTGAGGTACGTAGTTTTCTGGGTTTGGCAGGTTATTATCGGAGATTCATTGAGGGATTTTCTAGCATTGCTTCGGCTTTGACCAAGTTGACAAGGAAGAATGTCCAGTTTGTGTGGACTGGGGAATGTGAACGAGCATTCAATGAGTTTGAAGTATCTGTTCTCTCAGAAGGAGTTGAACATGAGACAGAGAAGGTGGATGGAACTCATAAAGGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000943 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0003887 GO:0003964 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006278 GO:0006508 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009058 GO:0009059 GO:0009987 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0019538 GO:0032196 GO:0032197 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140096 GO:0140097 GO:0140098 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

651

Amino Acids

73.36

Weight (kDa)

8.85

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	186 - 202	4.9e-06	Zinc knuckle
zf-CCHC	PF00098	207 - 223	1.1e-07	Zinc knuckle
RVP_2	PF08284	242 - 338	1.2e-27	Retroviral aspartyl protease
RVT_1	PF00078	395 - 554	5.1e-38	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000094)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42190
fragaria_vesca	FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica	MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica	Prupe.7G030900_v2.0.a1
pyrus_communis	pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis	RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora	Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii	Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa	Rorug06G0233600
rosa_samantha	Rh3CG302700 Rh6DG286700
rosa_wichuraiana	Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	526, 1450
Acc36I	ACCTGC	3 cut(s)	526, 1450, 1754
Acc65I	GGTACC	1 cut(s)	1254
AccB1I	GGYRCC	2 cut(s)	493, 1254
AccI	GTMKAC	1 cut(s)	79
AccII	CGCG	1 cut(s)	908
AccIII	TCCGGA	1 cut(s)	1331
AciI	CCGC	5 cut(s)	16, 428, 906, 908, 1564
AclI	AACGTT	1 cut(s)	207
AclWI	GGATC	7 cut(s)	13, 26, 209, 807, 1323, 1679, 1692
AcoI	YGGCCR	2 cut(s)	348, 634
AcsI	RAATTY	3 cut(s)	245, 1607, 1622
AcuI	CTGAAG	1 cut(s)	245
AdeI	CACNNNGTG	1 cut(s)	839
AfaI	GTAC	5 cut(s)	664, 1120, 1150, 1256, 1743
AfiI	CCNNNNNNNGG	7 cut(s)	56, 90, 108, 109, 412, 1294, 1348
AflII	CTTAAG	1 cut(s)	1292
AflIII	ACRYGT	1 cut(s)	629
AgsI	TTSAA	7 cut(s)	565, 998, 1231, 1585, 1876, 1886, 1913
AjnI	CCWGG	3 cut(s)	1021, 1066, 1114
AloI	GAACNNNNNNTCC	2 cut(s)	1628, 1660
AluBI	AGCT	9 cut(s)	65, 293, 328, 392, 500, 596, 853, 1291, 1301
AluI	AGCT	9 cut(s)	65, 293, 328, 392, 500, 596, 853, 1291, 1301
Alw21I	GWGCWC	2 cut(s)	330, 1168
Alw26I	GTCTC	2 cut(s)	466, 1913
Alw44I	GTGCAC	1 cut(s)	1164
AlwI	GGATC	7 cut(s)	13, 26, 209, 807, 1323, 1679, 1692
AlwNI	CAGNNNCTG	2 cut(s)	1121, 1736
Ama87I	CYCGRG	2 cut(s)	102, 591
Aor13HI	TCCGGA	1 cut(s)	1331
AoxI	GGCC	9 cut(s)	3, 348, 539, 580, 634, 800, 909, 968, 1717
ApaLI	GTGCAC	1 cut(s)	1164
ApeKI	GCWGC	4 cut(s)	13, 506, 1301, 1445
ApoI	RAATTY	3 cut(s)	245, 1607, 1622
Asp700I	GAANNNNTTC	1 cut(s)	560
Asp718I	GGTACC	1 cut(s)	1254
AspA2I	CCTAGG	2 cut(s)	797, 1265
AspS9I	GGNCC	5 cut(s)	4, 46, 580, 1546, 1717
AsuHPI	GGTGA	4 cut(s)	52, 1249, 1331, 1363
AsuII	TTCGAA	1 cut(s)	1664
AvaI	CYCGRG	2 cut(s)	102, 591
AvaII	GGWCC	2 cut(s)	46, 1546
AvrII	CCTAGG	2 cut(s)	797, 1265
BaeGI	GKGCMC	2 cut(s)	648, 1168
BalI	TGGCCA	2 cut(s)	350, 636
BamHI	GGATCC	2 cut(s)	18, 1684
BanI	GGYRCC	2 cut(s)	493, 1254
BanII	GRGCYC	2 cut(s)	103, 330
Bbv12I	GWGCWC	2 cut(s)	330, 1168
BbvCI	CCTCAGC	1 cut(s)	965
BbvI	GCAGC	4 cut(s)	25, 493, 1288, 1457
BccI	CCATC	7 cut(s)	32, 37, 229, 571, 634, 1664, 1928
BciT130I	CCWGG	3 cut(s)	1023, 1068, 1116
BclI	TGATCA	1 cut(s)	484
BcoDI	GTCTC	2 cut(s)	466, 1913
BfmI	CTRYAG	4 cut(s)	11, 507, 1443, 1728
BfrI	CTTAAG	1 cut(s)	1292
BfuAI	ACCTGC	3 cut(s)	526, 1450, 1754
BisI	GCNGC	5 cut(s)	14, 507, 909, 1302, 1446
BlnI	CCTAGG	2 cut(s)	797, 1265
BlsI	GCNGC	5 cut(s)	15, 508, 910, 1303, 1447
BmcAI	AGTACT	1 cut(s)	1150
Bme1390I	CCNGG	3 cut(s)	1023, 1068, 1116
Bme18I	GGWCC	2 cut(s)	46, 1546
BmeT110I	CYCGRG	2 cut(s)	102, 591
BmgT120I	GGNCC	5 cut(s)	4, 46, 580, 1546, 1717
BmiI	GGNNCC	6 cut(s)	20, 48, 495, 1256, 1686, 1718
BmrFI	CCNGG	3 cut(s)	1023, 1068, 1116
BmrI	ACTGGG	2 cut(s)	1723, 1863
BmsI	GCATC	6 cut(s)	170, 452, 709, 859, 1183, 1567
BmuI	ACTGGG	2 cut(s)	1723, 1863
Bpu10I	CCTNAGC	1 cut(s)	965
Bpu14I	TTCGAA	1 cut(s)	1664
BpuEI	CTTGAG	6 cut(s)	36, 286, 637, 693, 869, 1113
Bsa29I	ATCGAT	2 cut(s)	1104, 1320
BsaAI	YACGTR	1 cut(s)	1745
BsaBI	GATNNNNATC	2 cut(s)	23, 1557
BsaJI	CCNNGG	7 cut(s)	103, 262, 797, 906, 1157, 1265, 1648
BsaWI	WCCGGW	1 cut(s)	1331
BsaXI	ACNNNNNCTCC	4 cut(s)	1290, 1320, 1628, 1658
Bsc4I	CCNNNNNNNGG	7 cut(s)	56, 90, 108, 109, 412, 1294, 1348
Bse118I	RCCGGY	2 cut(s)	541, 1030
Bse1I	ACTGG	4 cut(s)	1342, 1718, 1840, 1858
Bse3DI	GCAATG	2 cut(s)	577, 1800
Bse8I	GATNNNNATC	2 cut(s)	23, 1557
BseAI	TCCGGA	1 cut(s)	1331
BseBI	CCWGG	3 cut(s)	1023, 1068, 1116
BseCI	ATCGAT	2 cut(s)	1104, 1320
BseDI	CCNNGG	7 cut(s)	103, 262, 797, 906, 1157, 1265, 1648
BseGI	GGATG	5 cut(s)	154, 1198, 1519, 1675, 1939
BseJI	GATNNNNATC	2 cut(s)	23, 1557
BseLI	CCNNNNNNNGG	7 cut(s)	56, 90, 108, 109, 412, 1294, 1348
BseMI	GCAATG	2 cut(s)	577, 1800
BseMII	CTCAG	6 cut(s)	285, 384, 438, 956, 1728, 1914
BseNI	ACTGG	4 cut(s)	1342, 1718, 1840, 1858
BseRI	GAGGAG	2 cut(s)	114, 149
BseSI	GKGCMC	2 cut(s)	648, 1168
BseXI	GCAGC	4 cut(s)	25, 493, 1288, 1457
BseYI	CCCAGC	1 cut(s)	666
BsgI	GTGCAG	1 cut(s)	1107
Bsh1236I	CGCG	1 cut(s)	908
BshFI	GGCC	9 cut(s)	5, 350, 541, 582, 636, 802, 911, 970, 1719
BshNI	GGYRCC	2 cut(s)	493, 1254
BshVI	ATCGAT	2 cut(s)	1104, 1320
BsiHKAI	GWGCWC	2 cut(s)	330, 1168
BsiHKCI	CYCGRG	2 cut(s)	102, 591
BsiSI	CCGG	3 cut(s)	542, 1031, 1332
BslFI	GGGAC	3 cut(s)	280, 693, 733
BslI	CCNNNNNNNGG	7 cut(s)	56, 90, 108, 109, 412, 1294, 1348
BsmAI	GTCTC	2 cut(s)	466, 1913
BsmFI	GGGAC	3 cut(s)	280, 693, 733
BsmI	GAATGC	1 cut(s)	1871
BsnI	GGCC	9 cut(s)	5, 350, 541, 582, 636, 802, 911, 970, 1719
BsoBI	CYCGRG	2 cut(s)	102, 591
Bsp119I	TTCGAA	1 cut(s)	1664
Bsp1286I	GDGCHC	4 cut(s)	103, 330, 648, 1168
Bsp13I	TCCGGA	1 cut(s)	1331
Bsp143I	GATC	8 cut(s)	18, 214, 484, 812, 928, 1317, 1328, 1684
BspACI	CCGC	5 cut(s)	16, 428, 906, 908, 1564
BspANI	GGCC	9 cut(s)	5, 350, 541, 582, 636, 802, 911, 970, 1719
BspCNI	CTCAG	6 cut(s)	286, 385, 439, 957, 1729, 1913
BspDI	ATCGAT	2 cut(s)	1104, 1320
BspEI	TCCGGA	1 cut(s)	1331
BspFNI	CGCG	1 cut(s)	908
BspLI	GGNNCC	6 cut(s)	20, 48, 495, 1256, 1686, 1718
BspMAI	CTGCAG	3 cut(s)	15, 511, 1447
BspMI	ACCTGC	3 cut(s)	526, 1450, 1754
BspPI	GGATC	7 cut(s)	13, 26, 209, 807, 1323, 1679, 1692
BspQI	GCTCTTC	1 cut(s)	40
BspT104I	TTCGAA	1 cut(s)	1664
BspT107I	GGYRCC	2 cut(s)	493, 1254
BspTI	CTTAAG	1 cut(s)	1292
BsrDI	GCAATG	2 cut(s)	577, 1800
BsrFI	RCCGGY	2 cut(s)	541, 1030
BsrI	ACTGG	4 cut(s)	1342, 1718, 1840, 1858
BssAI	RCCGGY	2 cut(s)	541, 1030
BssECI	CCNNGG	7 cut(s)	103, 262, 797, 906, 1157, 1265, 1648
BssMI	GATC	8 cut(s)	18, 214, 484, 812, 928, 1317, 1328, 1684
BssT1I	CCWWGG	5 cut(s)	262, 797, 1157, 1265, 1648
Bst2UI	CCWGG	3 cut(s)	1023, 1068, 1116
Bst4CI	ACNGT	3 cut(s)	322, 1469, 1732
Bst6I	CTCTTC	2 cut(s)	40, 464
BstAFI	CTTAAG	1 cut(s)	1292
BstBAI	YACGTR	1 cut(s)	1745
BstBI	TTCGAA	1 cut(s)	1664
BstC8I	GCNNGC	3 cut(s)	492, 598, 622
BstDSI	CCRYGG	1 cut(s)	906
BstENI	CCTNNNNNAGG	1 cut(s)	54
BstF5I	GGATG	5 cut(s)	154, 1198, 1519, 1675, 1939
BstFNI	CGCG	1 cut(s)	908
BstKTI	GATC	8 cut(s)	21, 217, 487, 815, 931, 1320, 1331, 1687
BstMAI	GTCTC	2 cut(s)	466, 1913
BstMBI	GATC	8 cut(s)	18, 214, 484, 812, 928, 1317, 1328, 1684
BstMWI	GCNNNNNNNGC	5 cut(s)	506, 512, 527, 1445, 1570
BstNI	CCWGG	3 cut(s)	1023, 1068, 1116
BstNSI	RCATGY	2 cut(s)	624, 633
BstSCI	CCNGG	3 cut(s)	1021, 1066, 1114
BstSFI	CTRYAG	4 cut(s)	11, 507, 1443, 1728
BstSLI	GKGCMC	2 cut(s)	648, 1168
BstSNI	TACGTA	1 cut(s)	1745
BstUI	CGCG	1 cut(s)	908
BstV1I	GCAGC	4 cut(s)	25, 493, 1288, 1457
BstX2I	RGATCY	5 cut(s)	18, 214, 812, 1328, 1684
BstXI	CCANNNNNNTGG	1 cut(s)	1540
BstYI	RGATCY	5 cut(s)	18, 214, 812, 1328, 1684
Bsu15I	ATCGAT	2 cut(s)	1104, 1320
BsuRI	GGCC	9 cut(s)	5, 350, 541, 582, 636, 802, 911, 970, 1719
BsuTUI	ATCGAT	2 cut(s)	1104, 1320
BtgI	CCRYGG	1 cut(s)	906
BtsCI	GGATG	5 cut(s)	154, 1198, 1519, 1675, 1939
BtsI	GCAGTG	1 cut(s)	1710
BtsIMutI	CAGTG	1 cut(s)	1710
BveI	ACCTGC	3 cut(s)	526, 1450, 1754
Cac8I	GCNNGC	3 cut(s)	492, 598, 622
CaiI	CAGNNNCTG	2 cut(s)	1121, 1736
Cfr10I	RCCGGY	2 cut(s)	541, 1030
Cfr13I	GGNCC	5 cut(s)	4, 46, 580, 1546, 1717
Cfr42I	CCGCGG	1 cut(s)	909
ClaI	ATCGAT	2 cut(s)	1104, 1320
CseI	GACGC	1 cut(s)	735
CsiI	ACCWGGT	1 cut(s)	1114
Csp6I	GTAC	5 cut(s)	663, 1119, 1149, 1255, 1742
CviAII	CATG	8 cut(s)	584, 621, 630, 977, 1417, 1550, 1655, 1916
CviQI	GTAC	5 cut(s)	663, 1119, 1149, 1255, 1742
DpnI	GATC	8 cut(s)	20, 216, 486, 814, 930, 1319, 1330, 1686
DpnII	GATC	8 cut(s)	18, 214, 484, 812, 928, 1317, 1328, 1684
DraIII	CACNNNGTG	1 cut(s)	839
EaeI	YGGCCR	2 cut(s)	348, 634
Eam1104I	CTCTTC	2 cut(s)	40, 464
EarI	CTCTTC	2 cut(s)	40, 464
Ecl136II	GAGCTC	1 cut(s)	328
Eco105I	TACGTA	1 cut(s)	1745
Eco130I	CCWWGG	5 cut(s)	262, 797, 1157, 1265, 1648
Eco147I	AGGCCT	1 cut(s)	802
Eco24I	GRGCYC	2 cut(s)	103, 330
Eco32I	GATATC	1 cut(s)	1337
Eco47I	GGWCC	2 cut(s)	46, 1546
Eco53kI	GAGCTC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	245
Eco88I	CYCGRG	2 cut(s)	102, 591
EcoICRI	GAGCTC	1 cut(s)	328
EcoNI	CCTNNNNNAGG	1 cut(s)	54
EcoRI	GAATTC	1 cut(s)	245
EcoRII	CCWGG	3 cut(s)	1021, 1066, 1114
EcoRV	GATATC	1 cut(s)	1337
EcoT14I	CCWWGG	5 cut(s)	262, 797, 1157, 1265, 1648
EcoT38I	GRGCYC	2 cut(s)	103, 330
ErhI	CCWWGG	5 cut(s)	262, 797, 1157, 1265, 1648
FaeI	CATG	8 cut(s)	587, 624, 633, 980, 1420, 1553, 1658, 1919
FaqI	GGGAC	3 cut(s)	280, 693, 733
FatI	CATG	8 cut(s)	583, 620, 629, 976, 1416, 1549, 1654, 1915
FauI	CCCGC	1 cut(s)	421
FauNDI	CATATG	1 cut(s)	29
FbaI	TGATCA	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	79
Fnu4HI	GCNGC	5 cut(s)	14, 507, 909, 1302, 1446
FokI	GGATG	5 cut(s)	161, 1205, 1526, 1682, 1946
FriOI	GRGCYC	2 cut(s)	103, 330
Fsp4HI	GCNGC	5 cut(s)	14, 507, 909, 1302, 1446
GluI	GCNGC	5 cut(s)	14, 507, 909, 1302, 1446
GsaI	CCCAGC	1 cut(s)	670
HaeIII	GGCC	9 cut(s)	5, 350, 541, 582, 636, 802, 911, 970, 1719
HapII	CCGG	3 cut(s)	542, 1031, 1332
HgaI	GACGC	1 cut(s)	735
Hin1II	CATG	8 cut(s)	587, 624, 633, 980, 1420, 1553, 1658, 1919
HincII	GTYRAC	1 cut(s)	1824
HindII	GTYRAC	1 cut(s)	1824
HinfI	GANTC	7 cut(s)	118, 370, 386, 451, 688, 1674, 1779
HpaII	CCGG	3 cut(s)	542, 1031, 1332
HphI	GGTGA	4 cut(s)	52, 1249, 1331, 1363
Hpy166II	GTNNAC	6 cut(s)	80, 903, 1166, 1824, 1851, 1865
Hpy188I	TCNGA	4 cut(s)	225, 448, 1776, 1903
Hpy188III	TCNNGA	6 cut(s)	466, 1046, 1058, 1312, 1332, 1612
Hpy8I	GTNNAC	6 cut(s)	80, 903, 1166, 1824, 1851, 1865
HpyAV	CCTTC	7 cut(s)	220, 1077, 1183, 1660, 1698, 1898, 1921
HpyCH4III	ACNGT	3 cut(s)	322, 1469, 1732
HpyCH4IV	ACGT	3 cut(s)	207, 1538, 1744
HpyF10VI	GCNNNNNNNGC	5 cut(s)	506, 512, 527, 1445, 1570
HpySE526I	ACGT	3 cut(s)	207, 1538, 1744
Hsp92II	CATG	8 cut(s)	587, 624, 633, 980, 1420, 1553, 1658, 1919
Kpn2I	TCCGGA	1 cut(s)	1331
KpnI	GGTACC	1 cut(s)	1258
Ksp22I	TGATCA	1 cut(s)	484
KspI	CCGCGG	1 cut(s)	909
Kzo9I	GATC	8 cut(s)	18, 214, 484, 812, 928, 1317, 1328, 1684
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	5 cut(s)	229, 325, 432, 743, 1298
Lsp1109I	GCAGC	4 cut(s)	25, 493, 1288, 1457
LweI	GCATC	6 cut(s)	170, 452, 709, 859, 1183, 1567
MabI	ACCWGGT	1 cut(s)	1114
MaeII	ACGT	3 cut(s)	207, 1538, 1744
MaeIII	GTNAC	2 cut(s)	1237, 1732
MalI	GATC	8 cut(s)	20, 216, 486, 814, 930, 1319, 1330, 1686
MboI	GATC	8 cut(s)	18, 214, 484, 812, 928, 1317, 1328, 1684
MboII	GAAGA	6 cut(s)	27, 481, 1195, 1198, 1327, 1843
MfeI	CAATTG	2 cut(s)	565, 879
MflI	RGATCY	5 cut(s)	18, 214, 812, 1328, 1684
MhlI	GDGCHC	4 cut(s)	103, 330, 648, 1168
MlsI	TGGCCA	2 cut(s)	350, 636
MluCI	AATT	8 cut(s)	245, 565, 879, 1242, 1595, 1607, 1622, 1659
MluNI	TGGCCA	2 cut(s)	350, 636
MlyI	GAGTC	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	1521
Mox20I	TGGCCA	2 cut(s)	350, 636
MroI	TCCGGA	1 cut(s)	1331
MroXI	GAANNNNTTC	1 cut(s)	560
MscI	TGGCCA	2 cut(s)	350, 636
MseI	TTAA	5 cut(s)	339, 791, 1245, 1293, 1430
MslI	CAYNNNNRTG	1 cut(s)	936
Msp20I	TGGCCA	2 cut(s)	350, 636
MspA1I	CMGCKG	3 cut(s)	16, 392, 908
MspCI	CTTAAG	1 cut(s)	1292
MspI	CCGG	3 cut(s)	542, 1031, 1332
MspR9I	CCNGG	3 cut(s)	1023, 1068, 1116
MunI	CAATTG	2 cut(s)	565, 879
Mva1269I	GAATGC	1 cut(s)	1871
MvaI	CCWGG	3 cut(s)	1023, 1068, 1116
MvnI	CGCG	1 cut(s)	908
MwoI	GCNNNNNNNGC	5 cut(s)	506, 512, 527, 1445, 1570
NdeI	CATATG	1 cut(s)	29
NdeII	GATC	8 cut(s)	18, 214, 484, 812, 928, 1317, 1328, 1684
NlaIII	CATG	8 cut(s)	587, 624, 633, 980, 1420, 1553, 1658, 1919
NlaIV	GGNNCC	6 cut(s)	20, 48, 495, 1256, 1686, 1718
NmuCI	GTSAC	1 cut(s)	1237
NspI	RCATGY	2 cut(s)	624, 633
NspV	TTCGAA	1 cut(s)	1664
PaeI	GCATGC	1 cut(s)	624
PaeR7I	CTCGAG	1 cut(s)	591
PaqCI	CACCTGC	2 cut(s)	526, 1450
PceI	AGGCCT	1 cut(s)	802
PciI	ACATGT	1 cut(s)	629
PciSI	GCTCTTC	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	1617
PctI	GAATGC	1 cut(s)	1871
PdmI	GAANNNNTTC	1 cut(s)	560
PfeI	GAWTC	6 cut(s)	118, 386, 451, 688, 1674, 1779
PkrI	GCNGC	5 cut(s)	15, 508, 910, 1303, 1447
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
Ppu21I	YACGTR	1 cut(s)	1745
PscI	ACATGT	1 cut(s)	629
Psp124BI	GAGCTC	1 cut(s)	330
Psp1406I	AACGTT	1 cut(s)	207
Psp6I	CCWGG	3 cut(s)	1021, 1066, 1114
PspFI	CCCAGC	1 cut(s)	666
PspGI	CCWGG	3 cut(s)	1021, 1066, 1114
PspN4I	GGNNCC	6 cut(s)	20, 48, 495, 1256, 1686, 1718
PspPI	GGNCC	5 cut(s)	4, 46, 580, 1546, 1717
PspXI	VCTCGAGB	1 cut(s)	591
PstI	CTGCAG	3 cut(s)	15, 511, 1447
PstNI	CAGNNNCTG	2 cut(s)	1121, 1736
PsuI	RGATCY	5 cut(s)	18, 214, 812, 1328, 1684
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	5 cut(s)	664, 1120, 1150, 1256, 1743
RsaNI	GTAC	5 cut(s)	663, 1119, 1149, 1255, 1742
RseI	CAYNNNNRTG	1 cut(s)	936
SacI	GAGCTC	1 cut(s)	330
SacII	CCGCGG	1 cut(s)	909
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	5 cut(s)	339, 791, 1245, 1293, 1430
SatI	GCNGC	5 cut(s)	14, 507, 909, 1302, 1446
Sau3AI	GATC	8 cut(s)	18, 214, 484, 812, 928, 1317, 1328, 1684
Sau96I	GGNCC	5 cut(s)	4, 46, 580, 1546, 1717
ScaI	AGTACT	1 cut(s)	1150
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	3 cut(s)	1023, 1068, 1116
SduI	GDGCHC	4 cut(s)	103, 330, 648, 1168
SexAI	ACCWGGT	1 cut(s)	1114
SfaNI	GCATC	6 cut(s)	170, 452, 709, 859, 1183, 1567
SfcI	CTRYAG	4 cut(s)	11, 507, 1443, 1728
Sfr274I	CTCGAG	1 cut(s)	591
Sfr303I	CCGCGG	1 cut(s)	909
SfuI	TTCGAA	1 cut(s)	1664
SgrBI	CCGCGG	1 cut(s)	909
SinI	GGWCC	2 cut(s)	46, 1546
SlaI	CTCGAG	1 cut(s)	591
SmiMI	CAYNNNNRTG	1 cut(s)	936
SmlI	CTYRAG	8 cut(s)	51, 301, 591, 652, 708, 848, 1128, 1292
SmoI	CTYRAG	8 cut(s)	51, 301, 591, 652, 708, 848, 1128, 1292
SnaBI	TACGTA	1 cut(s)	1745
SphI	GCATGC	1 cut(s)	624
Sse9I	AATT	8 cut(s)	245, 565, 879, 1242, 1595, 1607, 1622, 1659
SseBI	AGGCCT	1 cut(s)	802
SsiI	CCGC	5 cut(s)	16, 428, 906, 908, 1564
SstI	GAGCTC	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	802
StyD4I	CCNGG	3 cut(s)	1021, 1066, 1114
StyI	CCWWGG	5 cut(s)	262, 797, 1157, 1265, 1648
TaaI	ACNGT	3 cut(s)	322, 1469, 1732
TaiI	ACGT	3 cut(s)	210, 1541, 1747
TasI	AATT	8 cut(s)	245, 565, 879, 1242, 1595, 1607, 1622, 1659
TatI	WGTACW	1 cut(s)	1148
TauI	GCSGC	1 cut(s)	911
TfiI	GAWTC	6 cut(s)	118, 386, 451, 688, 1674, 1779
Tru1I	TTAA	5 cut(s)	339, 791, 1245, 1293, 1430
Tru9I	TTAA	5 cut(s)	339, 791, 1245, 1293, 1430
TscAI	CASTG	1 cut(s)	1710
TseFI	GTSAC	1 cut(s)	1237
TseI	GCWGC	4 cut(s)	13, 506, 1301, 1445
Tsp45I	GTSAC	1 cut(s)	1237
TspDTI	ATGAA	9 cut(s)	165, 238, 303, 748, 1004, 1126, 1478, 1724, 1771
TspGWI	ACGGA	1 cut(s)	1470
TspRI	CASTG	1 cut(s)	1710
Vha464I	CTTAAG	1 cut(s)	1292
VneI	GTGCAC	1 cut(s)	1164
VpaK11BI	GGWCC	2 cut(s)	46, 1546
XagI	CCTNNNNNAGG	1 cut(s)	54
XapI	RAATTY	3 cut(s)	245, 1607, 1622
XceI	RCATGY	2 cut(s)	624, 633
XhoI	CTCGAG	1 cut(s)	591
XmaJI	CCTAGG	2 cut(s)	797, 1265
XmiI	GTMKAC	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	560
ZrmI	AGTACT	1 cut(s)	1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.