FvH4_3g35752

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000094
Physical Location & Seq
Forward (+)
30659544 .. 30661237
1694 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35752.t1

Sequence Viewer

Length: 1575 bp
ATGGCTCCAGCGGAATTCAAAGAGTTGAAGATTCAATTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTTGCATGTCTCCATGGGGTGCTCTAGTGTTGTTTGTCAAGAAGAAAGATGGCACCATGAGACTATGCATCGATTATAGGAAGTTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTATCATCAGTTGCGGATCCGAGAGGGTGACATAGCCAAGACTGCTTTTCGGTCACGATATGGTCATTATGAGTTTGTGGTGATGCCATTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATACCTTGATCGTTTCGTGATCGTATTTATAGATGACATATTGGTTTACTCAAGAAGTGAGAAGGAGCATGCCAAGCATCTAAGAATAATATTGCGGACTTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTTGATAAAGTGGGGTTCTTGGGTCATGTGATTTCGGCAGAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGCTGCTCCTCTCACAAAGTTGACCAGAAAGGGGGTTAAGTTTGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAACATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCAGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAAAGAGAGCTTAATATGAGACAGAGAAGCTGGATGGAGTTAATCAGTGATTATGATTGCACTATCGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTGTCAGTGGATGAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATCCTTCTATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGGAACTCTATTGTTTAAAAATCGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCATAGCTCTGCATATGCTGCTCATCCGGAAGCCTTCAGGATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

525

Amino Acids

60.09

Weight (kDa)

9.18

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 36 - 196 1.6e-36 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 259 - 353 1e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 285 - 383 2.9e-32 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 680
AccB1I GGYRCC 2 cut(s) 122, 224
AccB7I CCANNNNNTGG 1 cut(s) 622
AccII CGCG 1 cut(s) 371
AccIII TCCGGA 2 cut(s) 847, 1552
AciI CCGC 9 cut(s) 11, 274, 369, 371, 502, 959, 1253, 1357, 1419
AclWI GGATC 7 cut(s) 203, 271, 284, 390, 605, 618, 1370
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 1546
AfiI CCNNNNNNNGG 3 cut(s) 622, 759, 965
AjiI CACGTC 1 cut(s) 893
AjnI CCWGG 1 cut(s) 1171
AleI CACNNNNGTG 1 cut(s) 656
AluBI AGCT 9 cut(s) 994, 1105, 1125, 1181, 1193, 1274, 1406, 1526, 1533
AluI AGCT 9 cut(s) 994, 1105, 1125, 1181, 1193, 1274, 1406, 1526, 1533
Alw21I GWGCWC 2 cut(s) 94, 832
Alw26I GTCTC 4 cut(s) 84, 124, 1021, 1108
AlwI GGATC 7 cut(s) 203, 271, 284, 390, 605, 618, 1370
Aor13HI TCCGGA 2 cut(s) 847, 1552
AoxI GGCC 2 cut(s) 68, 1334
ApeKI GCWGC 4 cut(s) 731, 998, 1421, 1544
ApoI RAATTY 1 cut(s) 14
AspLEI GCGC 1 cut(s) 705
AsuHPI GGTGA 2 cut(s) 299, 352
AsuII TTCGAA 1 cut(s) 1409
BamHI GGATCC 2 cut(s) 276, 610
BanI GGYRCC 2 cut(s) 122, 224
BbsI GAAGAC 2 cut(s) 652, 1070
Bbv12I GWGCWC 2 cut(s) 94, 832
BbvI GCAGC 4 cut(s) 718, 1010, 1433, 1531
BccI CCATC 5 cut(s) 113, 1123, 1234, 1390, 1442
BcgI CGANNNNNNTGC 2 cut(s) 905, 939
BciT130I CCWGG 1 cut(s) 1173
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 4 cut(s) 84, 124, 1021, 1108
BfaI CTAG 4 cut(s) 95, 888, 899, 945
BfmI CTRYAG 2 cut(s) 1275, 1383
BfoI RGCGCY 1 cut(s) 706
BfuAI ACCTGC 1 cut(s) 680
BisI GCNGC 7 cut(s) 372, 732, 959, 999, 1419, 1422, 1545
BlsI GCNGC 7 cut(s) 373, 733, 960, 1000, 1420, 1423, 1546
Bme1390I CCNGG 1 cut(s) 1173
BmgBI CACGTC 1 cut(s) 893
BmiI GGNNCC 7 cut(s) 6, 124, 226, 278, 612, 1045, 1417
BmrFI CCNGG 1 cut(s) 1173
BmsI GCATC 6 cut(s) 147, 333, 493, 871, 903, 1186
BpiI GAAGAC 2 cut(s) 652, 1070
BpmI CTGGAG 1 cut(s) 1010
Bpu14I TTCGAA 1 cut(s) 1409
BpuEI CTTGAG 2 cut(s) 442, 1001
Bsa29I ATCGAT 2 cut(s) 141, 198
BsaJI CCNNGG 3 cut(s) 83, 191, 369
BsaWI WCCGGW 2 cut(s) 847, 1552
BsaXI ACNNNNNCTCC 6 cut(s) 591, 621, 814, 844, 852, 882
Bsc4I CCNNNNNNNGG 3 cut(s) 622, 759, 965
Bse1I ACTGG 2 cut(s) 1320, 1337
BseAI TCCGGA 2 cut(s) 847, 1552
BseBI CCWGG 1 cut(s) 1173
BseCI ATCGAT 2 cut(s) 141, 198
BseDI CCNNGG 3 cut(s) 83, 191, 369
BseGI GGATG 5 cut(s) 856, 1134, 1168, 1303, 1549
BseLI CCNNNNNNNGG 3 cut(s) 622, 759, 965
BseNI ACTGG 2 cut(s) 1320, 1337
BseRI GAGGAG 1 cut(s) 726
BseXI GCAGC 4 cut(s) 718, 1010, 1433, 1531
Bsh1236I CGCG 1 cut(s) 371
BshFI GGCC 2 cut(s) 70, 1336
BshNI GGYRCC 2 cut(s) 122, 224
BshVI ATCGAT 2 cut(s) 141, 198
BsiHKAI GWGCWC 2 cut(s) 94, 832
BsiSI CCGG 2 cut(s) 848, 1553
BslI CCNNNNNNNGG 3 cut(s) 622, 759, 965
BsmAI GTCTC 4 cut(s) 84, 124, 1021, 1108
BsnI GGCC 2 cut(s) 70, 1336
Bsp119I TTCGAA 1 cut(s) 1409
Bsp1286I GDGCHC 2 cut(s) 94, 832
Bsp13I TCCGGA 2 cut(s) 847, 1552
Bsp19I CCATGG 1 cut(s) 83
BspACI CCGC 9 cut(s) 11, 274, 369, 371, 502, 959, 1253, 1357, 1419
BspANI GGCC 2 cut(s) 70, 1336
BspDI ATCGAT 2 cut(s) 141, 198
BspEI TCCGGA 2 cut(s) 847, 1552
BspFNI CGCG 1 cut(s) 371
BspHI TCATGA 2 cut(s) 387, 982
BspLI GGNNCC 7 cut(s) 6, 124, 226, 278, 612, 1045, 1417
BspMI ACCTGC 1 cut(s) 680
BspPI GGATC 7 cut(s) 203, 271, 284, 390, 605, 618, 1370
BspT104I TTCGAA 1 cut(s) 1409
BspT107I GGYRCC 2 cut(s) 122, 224
BsrI ACTGG 2 cut(s) 1320, 1337
BssECI CCNNGG 3 cut(s) 83, 191, 369
BssT1I CCWWGG 1 cut(s) 83
Bst2UI CCWGG 1 cut(s) 1173
Bst4CI ACNGT 3 cut(s) 169, 658, 1368
Bst6I CTCTTC 3 cut(s) 1438, 1491, 1499
BstAPI GCANNNNNTGC 1 cut(s) 1544
BstBI TTCGAA 1 cut(s) 1409
BstC8I GCNNGC 4 cut(s) 477, 791, 996, 1272
BstDEI CTNAG 3 cut(s) 488, 531, 1202
BstDSI CCRYGG 2 cut(s) 83, 369
BstF5I GGATG 5 cut(s) 856, 1134, 1168, 1303, 1549
BstFNI CGCG 1 cut(s) 371
BstH2I RGCGCY 1 cut(s) 706
BstHHI GCGC 1 cut(s) 705
BstMAI GTCTC 4 cut(s) 84, 124, 1021, 1108
BstMWI GCNNNNNNNGC 6 cut(s) 302, 371, 481, 955, 1316, 1544
BstNI CCWGG 1 cut(s) 1173
BstNSI RCATGY 2 cut(s) 79, 479
BstSCI CCNGG 1 cut(s) 1171
BstSFI CTRYAG 2 cut(s) 1275, 1383
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 4 cut(s) 718, 1010, 1433, 1531
BstV2I GAAGAC 2 cut(s) 652, 1070
BstX2I RGATCY 3 cut(s) 276, 382, 610
BstYI RGATCY 3 cut(s) 276, 382, 610
Bsu15I ATCGAT 2 cut(s) 141, 198
BsuRI GGCC 2 cut(s) 70, 1336
BsuTUI ATCGAT 2 cut(s) 141, 198
BtgI CCRYGG 2 cut(s) 83, 369
BtrI CACGTC 1 cut(s) 893
BtsCI GGATG 5 cut(s) 856, 1134, 1168, 1303, 1549
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 6 cut(s) 174, 636, 654, 791, 1147, 1299
BveI ACCTGC 1 cut(s) 680
Cac8I GCNNGC 4 cut(s) 477, 791, 996, 1272
CciI TCATGA 2 cut(s) 387, 982
CfoI GCGC 1 cut(s) 705
Cfr42I CCGCGG 1 cut(s) 372
ClaI ATCGAT 2 cut(s) 141, 198
DdeI CTNAG 3 cut(s) 488, 531, 1202
DraI TTTAAA 1 cut(s) 1465
Eam1104I CTCTTC 3 cut(s) 1438, 1491, 1499
EarI CTCTTC 3 cut(s) 1438, 1491, 1499
Eco130I CCWWGG 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 1546
EcoRI GAATTC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 1171
EcoT14I CCWWGG 1 cut(s) 83
EcoT22I ATGCAT 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 83
FalI AAGNNNNNCTT 2 cut(s) 803, 835
FauI CCCGC 2 cut(s) 376, 1350
FauNDI CATATG 1 cut(s) 1540
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 7 cut(s) 372, 732, 959, 999, 1419, 1422, 1545
FokI GGATG 5 cut(s) 863, 1141, 1155, 1310, 1536
Fsp4HI GCNGC 7 cut(s) 372, 732, 959, 999, 1419, 1422, 1545
FspBI CTAG 4 cut(s) 95, 888, 899, 945
GlaI GCGC 1 cut(s) 704
GluI GCNGC 7 cut(s) 372, 732, 959, 999, 1419, 1422, 1545
GsuI CTGGAG 1 cut(s) 1010
HaeII RGCGCY 1 cut(s) 706
HaeIII GGCC 2 cut(s) 70, 1336
HapII CCGG 2 cut(s) 848, 1553
HhaI GCGC 1 cut(s) 705
Hin6I GCGC 1 cut(s) 703
HinP1I GCGC 1 cut(s) 703
HincII GTYRAC 1 cut(s) 750
HindII GTYRAC 1 cut(s) 750
HinfI GANTC 4 cut(s) 31, 157, 667, 1075
HpaII CCGG 2 cut(s) 848, 1553
HphI GGTGA 2 cut(s) 299, 352
Hpy166II GTNNAC 3 cut(s) 454, 750, 1092
Hpy188I TCNGA 4 cut(s) 195, 281, 781, 1056
Hpy8I GTNNAC 3 cut(s) 454, 750, 1092
HpyAV CCTTC 4 cut(s) 463, 590, 1389, 1570
HpyCH4III ACNGT 3 cut(s) 169, 658, 1368
HpyCH4IV ACGT 1 cut(s) 892
HpyCH4V TGCA 8 cut(s) 40, 75, 138, 365, 916, 998, 1155, 1538
HpyF10VI GCNNNNNNNGC 6 cut(s) 302, 371, 481, 955, 1316, 1544
HpyF3I CTNAG 3 cut(s) 488, 531, 1202
HpySE526I ACGT 1 cut(s) 892
HspAI GCGC 1 cut(s) 703
Kpn2I TCCGGA 2 cut(s) 847, 1552
Ksp22I TGATCA 1 cut(s) 211
KspI CCGCGG 1 cut(s) 372
LmnI GCTCC 7 cut(s) 10, 472, 739, 835, 991, 1043, 1415
Lsp1109I GCAGC 4 cut(s) 718, 1010, 1433, 1531
LweI GCATC 6 cut(s) 147, 333, 493, 871, 903, 1186
MaeI CTAG 4 cut(s) 95, 888, 899, 945
MaeII ACGT 1 cut(s) 892
MaeIII GTNAC 4 cut(s) 163, 287, 312, 658
MboII GAAGA 9 cut(s) 40, 124, 184, 657, 823, 1070, 1455, 1508, 1516
MfeI CAATTG 2 cut(s) 35, 950
MflI RGATCY 3 cut(s) 276, 382, 610
MhlI GDGCHC 2 cut(s) 94, 832
MluCI AATT 7 cut(s) 14, 35, 637, 806, 814, 950, 970
MlyI GAGTC 1 cut(s) 1084
Mph1103I ATGCAT 1 cut(s) 140
MroI TCCGGA 2 cut(s) 847, 1552
MseI TTAA 4 cut(s) 765, 1107, 1136, 1464
MslI CAYNNNNRTG 1 cut(s) 656
MspA1I CMGCKG 2 cut(s) 11, 371
MspI CCGG 2 cut(s) 848, 1553
MspR9I CCNGG 1 cut(s) 1173
MunI CAATTG 2 cut(s) 35, 950
MvaI CCWGG 1 cut(s) 1173
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 6 cut(s) 302, 371, 481, 955, 1316, 1544
NcoI CCATGG 1 cut(s) 83
NdeI CATATG 1 cut(s) 1540
NlaIV GGNNCC 7 cut(s) 6, 124, 226, 278, 612, 1045, 1417
NmuCI GTSAC 4 cut(s) 163, 287, 312, 658
NsiI ATGCAT 1 cut(s) 140
NspI RCATGY 2 cut(s) 79, 479
NspV TTCGAA 1 cut(s) 1409
OliI CACNNNNGTG 1 cut(s) 656
PaeI GCATGC 1 cut(s) 479
PagI TCATGA 2 cut(s) 387, 982
PfeI GAWTC 3 cut(s) 31, 157, 667
PflFI GACNNNGTC 1 cut(s) 894
PflMI CCANNNNNTGG 1 cut(s) 622
PfoI TCCNGGA 1 cut(s) 1171
PkrI GCNGC 7 cut(s) 373, 733, 960, 1000, 1420, 1423, 1546
PleI GAGTC 1 cut(s) 1083
PpsI GAGTC 1 cut(s) 1083
Psp6I CCWGG 1 cut(s) 1171
PspGI CCWGG 1 cut(s) 1171
PspN4I GGNNCC 7 cut(s) 6, 124, 226, 278, 612, 1045, 1417
PsuI RGATCY 3 cut(s) 276, 382, 610
PsyI GACNNNGTC 1 cut(s) 894
RseI CAYNNNNRTG 1 cut(s) 656
SacII CCGCGG 1 cut(s) 372
SaqAI TTAA 4 cut(s) 765, 1107, 1136, 1464
SatI GCNGC 7 cut(s) 372, 732, 959, 999, 1419, 1422, 1545
SchI GAGTC 1 cut(s) 1084
ScrFI CCNGG 1 cut(s) 1173
SduI GDGCHC 2 cut(s) 94, 832
SfaNI GCATC 6 cut(s) 147, 333, 493, 871, 903, 1186
SfcI CTRYAG 2 cut(s) 1275, 1383
Sfr303I CCGCGG 1 cut(s) 372
SfuI TTCGAA 1 cut(s) 1409
SgrBI CCGCGG 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 656
SmlI CTYRAG 2 cut(s) 457, 1016
SmoI CTYRAG 2 cut(s) 457, 1016
SphI GCATGC 1 cut(s) 479
Sse9I AATT 7 cut(s) 14, 35, 637, 806, 814, 950, 970
SsiI CCGC 9 cut(s) 11, 274, 369, 371, 502, 959, 1253, 1357, 1419
SspI AATATT 1 cut(s) 498
SspMI CTAG 4 cut(s) 95, 888, 899, 945
StyD4I CCNGG 1 cut(s) 1171
StyI CCWWGG 1 cut(s) 83
TaaI ACNGT 3 cut(s) 169, 658, 1368
TaiI ACGT 1 cut(s) 895
TaqI TCGA 8 cut(s) 141, 198, 635, 925, 1161, 1207, 1390, 1409
TaqII GACCGA 1 cut(s) 300
TasI AATT 7 cut(s) 14, 35, 637, 806, 814, 950, 970
TauI GCSGC 3 cut(s) 374, 961, 1421
TfiI GAWTC 3 cut(s) 31, 157, 667
Tru1I TTAA 4 cut(s) 765, 1107, 1136, 1464
Tru9I TTAA 4 cut(s) 765, 1107, 1136, 1464
TscAI CASTG 6 cut(s) 174, 636, 661, 791, 1147, 1299
TseFI GTSAC 4 cut(s) 163, 287, 312, 658
TseI GCWGC 4 cut(s) 731, 998, 1421, 1544
Tsp45I GTSAC 4 cut(s) 163, 287, 312, 658
TspDTI ATGAA 4 cut(s) 367, 404, 1316, 1509
TspGWI ACGGA 2 cut(s) 174, 677
TspRI CASTG 6 cut(s) 174, 636, 661, 791, 1147, 1299
Tth111I GACNNNGTC 1 cut(s) 894
Van91I CCANNNNNTGG 1 cut(s) 622
XapI RAATTY 1 cut(s) 14
XbaI TCTAGA 1 cut(s) 887
XceI RCATGY 2 cut(s) 79, 479
XspI CTAG 4 cut(s) 95, 888, 899, 945
Zsp2I ATGCAT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.