Rw2G046380

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000094
Physical Location & Seq
Reverse (-)
73640459 .. 73642111
1653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G046380.1

Sequence Viewer

Length: 1608 bp
ATGTATCGAGATTGGTTGGCGCCTCACGATTATCCGACTTTTAAGTTAGCTGTGGAGGCTGCTATGAGGTGTGAGGCTAGATATCTGGACGGTTCCCGACCTTTGGAGATTGGCGGTCCCAGTCAGGGGCCATCTAAGAGAATTGCCTCCAGTTCGGGTTCTGCATCGTCATCAGGCAGTAGACCGAGCAGTTCAGATTCTAGCTCTCGTCAGCGCTTCAGGGGACGCTTCAGGAGGCCTGGGCAGACAGGTAGGAGACAGTTCAGGGGTGGCACTGCTAGTTCCAGTGGAGGCTTTGGTAGACAGGCGATTCCGAGGGACTATCCCCAGTGTGCTACTTGTGGTAGGCACCATGTGGGCCCGTGTCAGGCAGGTGTGGGGACTTGTTACCAGTGTGGCCAGTGGGGTCACTACAGGAGAGAATGCCCTCAGTTGACCCAGGGAGTCTTCACCACTACTAGTCAGAGTATGGGTCAGACCTCTGTGGGTGCTGCTAGTTCAGGCTCTCATGGAAGTTTGTCAGGCAGGAGTAGCACTCAGACGGGTCGTGGACAGAGAGGGCGTCCAGTGACCCAGGCCCGTCTTCATGCTTTGACCCAGCAGGAGGGTCGCACTGCACCGAACGTCATTATGGGTATGTTAATTGTTTTTGGCCAACCAGCTTTCATTTTGATTGATCCTGGAGCCTCTCACTCCTTTATGTCTAAGAGGTTTTCTTTCTTTGCTAATGTGCCCCCATCTCTCCTACTCGGAGAGTGGCATGTTGTTCTACCATCGGGGGAAAGACATAGAATTGAATGGGTACATCGTTTTTGTGGAGTGTTTGTAGAAGGAGTTTGCTTAGAGGCGGACTTGATTCCATTTGAGTTAGTGGAGTTTGATGTAATCCTAGGGATGGATTTCCTTTGGATGCATCATGCCTTACCAGTTGTAACCTTTTATGGTGAACGGGAGGTTCTCCCATCTTGCATAATCTCCGCTTTAACTATTAAGAAGATGATGGGTAAGGGTTGCCAAGCTTATTTGGCACATGTGGTGAATTCAAATGCCGAAGTTATGGATCTTAGTCAAATTCCTATTGTTGGTGACTATCCAGATGTATTTCCAGAAGAATTGCCTGGATTGCCCCCGGTGCGAGAGATAGACTTTACCATTGATTTACTTCCAGGTACAACACCCATCTCTCAAGCACCTTATAGAATGGCACCGGCGGAACTGAAGGAGTTGTATGTACAGTTGCAGGAGTTAACGGATAAGGGATTTATACGACCTAGTGTATCTCCCTGGGGTGCACCTGTGTTGTTTGTGAAGAAGAAAGATGGTACTTTGAGGCTTTGTATTGATTACCGGAAACTAAACAGGGTGACTATAAGGAATAAATATCCCTTGCCCCGCATTGATGATTTGTTTGACCAGTTGAGGGGTGCTAAAGTTTTCTCAAAAATTGATTTGAGGTCTGGTTATCATCAGTTACAGATTAAAGAGGAGGATGTAGCCAAAACTGCTTTTCGATCATGTTATGGTCATTATGAGTTCCTTGTTATGCCTTTTGGGTTGACTAATGCACCCGCTGCTTTCATGGATCTCATGAACAGGGTGTTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

535

Amino Acids

59.27

Weight (kDa)

9.17

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 190 - 307 3.4e-23 Retroviral aspartyl protease
RVT_1 PF00078 436 - 534 5.1e-19 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 362
Acc36I ACCTGC 1 cut(s) 362
AccB1I GGYRCC 3 cut(s) 19, 348, 1204
AccI GTMKAC 2 cut(s) 181, 301
AciI CCGC 6 cut(s) 114, 848, 978, 1211, 1393, 1569
AclWI GGATC 3 cut(s) 671, 1068, 1590
AcoI YGGCCR 2 cut(s) 397, 652
AcsI RAATTY 2 cut(s) 1039, 1071
AcuI CTGAAG 3 cut(s) 202, 214, 1238
AcyI GRCGYC 2 cut(s) 20, 562
AdeI CACNNNGTG 1 cut(s) 355
AfaI GTAC 4 cut(s) 804, 1171, 1233, 1324
AfeI AGCGCT 1 cut(s) 215
AfiI CCNNNNNNNGG 8 cut(s) 103, 125, 126, 367, 604, 895, 1082, 1420
AflIII ACRYGT 1 cut(s) 1030
AgsI TTSAA 2 cut(s) 797, 1044
AhlI ACTAGT 1 cut(s) 458
AjnI CCWGG 7 cut(s) 238, 438, 573, 679, 1117, 1165, 1283
AluBI AGCT 4 cut(s) 50, 204, 662, 1019
AluI AGCT 4 cut(s) 50, 204, 662, 1019
Alw21I GWGCWC 1 cut(s) 1294
Alw26I GTCTC 1 cut(s) 250
Alw44I GTGCAC 1 cut(s) 1290
AlwI GGATC 3 cut(s) 671, 1068, 1590
Aor51HI AGCGCT 1 cut(s) 215
AoxI GGCC 6 cut(s) 128, 236, 358, 397, 576, 652
ApaI GGGCCC 1 cut(s) 362
ApaLI GTGCAC 1 cut(s) 1290
ApeKI GCWGC 3 cut(s) 59, 491, 1571
ApoI RAATTY 2 cut(s) 1039, 1071
AspA2I CCTAGG 1 cut(s) 889
AspLEI GCGC 2 cut(s) 22, 216
AspS9I GGNCC 5 cut(s) 116, 128, 358, 359, 577
AsuC2I CCSGG 1 cut(s) 1130
AsuHPI GGTGA 5 cut(s) 442, 956, 1048, 1097, 1375
AvaII GGWCC 1 cut(s) 116
AvrII CCTAGG 1 cut(s) 889
BaeGI GKGCMC 3 cut(s) 362, 735, 1294
BalI TGGCCA 2 cut(s) 399, 654
BanI GGYRCC 3 cut(s) 19, 348, 1204
BanII GRGCYC 1 cut(s) 362
BbsI GAAGAC 2 cut(s) 439, 575
Bbv12I GWGCWC 1 cut(s) 1294
BbvI GCAGC 3 cut(s) 46, 478, 1558
BccI CCATC 8 cut(s) 139, 745, 781, 889, 970, 994, 1187, 1313
BcgI CGANNNNNNTGC 2 cut(s) 590, 624
BciT130I CCWGG 7 cut(s) 240, 440, 575, 681, 1119, 1167, 1285
BcnI CCSGG 1 cut(s) 1130
BcoDI GTCTC 1 cut(s) 250
BcuI ACTAGT 1 cut(s) 458
BfaI CTAG 7 cut(s) 78, 201, 279, 459, 495, 890, 1272
BfmI CTRYAG 1 cut(s) 412
BfoI RGCGCY 2 cut(s) 23, 217
BfuAI ACCTGC 1 cut(s) 362
BisI GCNGC 3 cut(s) 60, 492, 1572
BlnI CCTAGG 1 cut(s) 889
BlsI GCNGC 3 cut(s) 61, 493, 1573
Bme1390I CCNGG 8 cut(s) 240, 440, 575, 681, 1119, 1130, 1167, 1285
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 5 cut(s) 116, 128, 358, 359, 577
BmiI GGNNCC 8 cut(s) 21, 94, 118, 129, 350, 360, 685, 1206
BmrFI CCNGG 8 cut(s) 240, 440, 575, 681, 1119, 1130, 1167, 1285
BmrI ACTGGG 2 cut(s) 114, 322
BmsI GCATC 3 cut(s) 173, 900, 922
BmuI ACTGGG 2 cut(s) 114, 322
BpiI GAAGAC 2 cut(s) 439, 575
BplI GAGNNNNNCTC 2 cut(s) 520, 552
BpmI CTGGAG 2 cut(s) 133, 702
BpuEI CTTGAG 1 cut(s) 1170
BpuMI CCSGG 1 cut(s) 1130
BsaHI GRCGYC 2 cut(s) 20, 562
BsaJI CCNNGG 9 cut(s) 239, 314, 438, 439, 573, 889, 1128, 1283, 1284
BsaWI WCCGGW 1 cut(s) 1347
BsaXI ACNNNNNCTCC 2 cut(s) 810, 840
Bsc4I CCNNNNNNNGG 8 cut(s) 103, 125, 126, 367, 604, 895, 1082, 1420
Bse118I RCCGGY 1 cut(s) 1207
Bse1I ACTGG 9 cut(s) 120, 150, 285, 328, 391, 400, 566, 926, 1414
BseBI CCWGG 7 cut(s) 240, 440, 575, 681, 1119, 1167, 1285
BseDI CCNNGG 9 cut(s) 239, 314, 438, 439, 573, 889, 1128, 1283, 1284
BseGI GGATG 3 cut(s) 900, 915, 1495
BseLI CCNNNNNNNGG 8 cut(s) 103, 125, 126, 367, 604, 895, 1082, 1420
BseMII CTCAG 2 cut(s) 443, 551
BseNI ACTGG 9 cut(s) 120, 150, 285, 328, 391, 400, 566, 926, 1414
BseRI GAGGAG 1 cut(s) 1499
BseSI GKGCMC 3 cut(s) 362, 735, 1294
BseXI GCAGC 3 cut(s) 46, 478, 1558
BseYI CCCAGC 1 cut(s) 597
BsgI GTGCAG 1 cut(s) 600
BshFI GGCC 6 cut(s) 130, 238, 360, 399, 578, 654
BshNI GGYRCC 3 cut(s) 19, 348, 1204
BsiHKAI GWGCWC 1 cut(s) 1294
BsiSI CCGG 3 cut(s) 1130, 1208, 1348
BslFI GGGAC 4 cut(s) 102, 237, 332, 394
BslI CCNNNNNNNGG 8 cut(s) 103, 125, 126, 367, 604, 895, 1082, 1420
BsmAI GTCTC 1 cut(s) 250
BsmFI GGGAC 4 cut(s) 102, 237, 332, 394
BsmI GAATGC 1 cut(s) 428
BsnI GGCC 6 cut(s) 130, 238, 360, 399, 578, 654
Bsp120I GGGCCC 1 cut(s) 358
Bsp1286I GDGCHC 3 cut(s) 362, 735, 1294
Bsp1407I TGTACA 1 cut(s) 1231
Bsp143I GATC 4 cut(s) 676, 1060, 1511, 1582
BspACI CCGC 6 cut(s) 114, 848, 978, 1211, 1393, 1569
BspANI GGCC 6 cut(s) 130, 238, 360, 399, 578, 654
BspCNI CTCAG 2 cut(s) 442, 550
BspHI TCATGA 1 cut(s) 1587
BspLI GGNNCC 8 cut(s) 21, 94, 118, 129, 350, 360, 685, 1206
BspMI ACCTGC 1 cut(s) 362
BspPI GGATC 3 cut(s) 671, 1068, 1590
BspT107I GGYRCC 3 cut(s) 19, 348, 1204
BsrFI RCCGGY 1 cut(s) 1207
BsrGI TGTACA 1 cut(s) 1231
BsrI ACTGG 9 cut(s) 120, 150, 285, 328, 391, 400, 566, 926, 1414
BssAI RCCGGY 1 cut(s) 1207
BssECI CCNNGG 9 cut(s) 239, 314, 438, 439, 573, 889, 1128, 1283, 1284
BssMI GATC 4 cut(s) 676, 1060, 1511, 1582
BssNI GRCGYC 2 cut(s) 20, 562
BssT1I CCWWGG 1 cut(s) 889
Bst2UI CCWGG 7 cut(s) 240, 440, 575, 681, 1119, 1167, 1285
Bst4CI ACNGT 3 cut(s) 92, 261, 1236
BstACI GRCGYC 2 cut(s) 20, 562
BstAPI GCANNNNNTGC 1 cut(s) 1571
BstAUI TGTACA 1 cut(s) 1231
BstDEI CTNAG 6 cut(s) 135, 429, 537, 705, 841, 1064
BstF5I GGATG 3 cut(s) 900, 915, 1495
BstH2I RGCGCY 2 cut(s) 23, 217
BstHHI GCGC 2 cut(s) 22, 216
BstKTI GATC 4 cut(s) 679, 1063, 1514, 1585
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 4 cut(s) 676, 1060, 1511, 1582
BstMWI GCNNNNNNNGC 7 cut(s) 56, 531, 1025, 1123, 1132, 1502, 1571
BstNI CCWGG 7 cut(s) 240, 440, 575, 681, 1119, 1167, 1285
BstNSI RCATGY 2 cut(s) 764, 1034
BstSCI CCNGG 8 cut(s) 238, 438, 573, 679, 1117, 1128, 1165, 1283
BstSFI CTRYAG 1 cut(s) 412
BstSLI GKGCMC 3 cut(s) 362, 735, 1294
BstV1I GCAGC 3 cut(s) 46, 478, 1558
BstV2I GAAGAC 2 cut(s) 439, 575
BstX2I RGATCY 2 cut(s) 1060, 1582
BstYI RGATCY 2 cut(s) 1060, 1582
BsuRI GGCC 6 cut(s) 130, 238, 360, 399, 578, 654
BtsCI GGATG 3 cut(s) 900, 915, 1495
BtsI GCAGTG 2 cut(s) 273, 612
BtsIMutI CAGTG 7 cut(s) 273, 292, 335, 398, 407, 573, 612
BveI ACCTGC 1 cut(s) 362
CciI TCATGA 1 cut(s) 1587
CfoI GCGC 2 cut(s) 22, 216
Cfr10I RCCGGY 1 cut(s) 1207
Cfr13I GGNCC 5 cut(s) 116, 128, 358, 359, 577
CseI GACGC 2 cut(s) 234, 551
Csp6I GTAC 4 cut(s) 803, 1170, 1232, 1323
CviAII CATG 9 cut(s) 353, 509, 587, 761, 917, 1031, 1515, 1579, 1588
CviQI GTAC 4 cut(s) 803, 1170, 1232, 1323
DdeI CTNAG 6 cut(s) 135, 429, 537, 705, 841, 1064
DinI GGCGCC 1 cut(s) 21
DpnI GATC 4 cut(s) 678, 1062, 1513, 1584
DpnII GATC 4 cut(s) 676, 1060, 1511, 1582
DraIII CACNNNGTG 1 cut(s) 355
EaeI YGGCCR 2 cut(s) 397, 652
EciI GGCGGA 2 cut(s) 863, 1226
Eco130I CCWWGG 1 cut(s) 889
Eco147I AGGCCT 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 83
Eco47I GGWCC 1 cut(s) 116
Eco47III AGCGCT 1 cut(s) 215
Eco57I CTGAAG 3 cut(s) 202, 214, 1238
EcoRI GAATTC 1 cut(s) 1039
EcoRII CCWGG 7 cut(s) 238, 438, 573, 679, 1117, 1165, 1283
EcoRV GATATC 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 889
EcoT22I ATGCAT 1 cut(s) 915
EcoT38I GRGCYC 1 cut(s) 362
EgeI GGCGCC 1 cut(s) 21
EheI GGCGCC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 889
FaeI CATG 9 cut(s) 356, 512, 590, 764, 920, 1034, 1518, 1582, 1591
FaqI GGGAC 4 cut(s) 102, 237, 332, 394
FatI CATG 9 cut(s) 352, 508, 586, 760, 916, 1030, 1514, 1578, 1587
FauI CCCGC 2 cut(s) 1400, 1576
FblI GTMKAC 2 cut(s) 181, 301
Fnu4HI GCNGC 3 cut(s) 60, 492, 1572
FokI GGATG 3 cut(s) 907, 922, 1502
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 3 cut(s) 60, 492, 1572
FspBI CTAG 7 cut(s) 78, 201, 279, 459, 495, 890, 1272
GlaI GCGC 2 cut(s) 21, 215
GluI GCNGC 3 cut(s) 60, 492, 1572
GsaI CCCAGC 1 cut(s) 601
GsuI CTGGAG 2 cut(s) 133, 702
HaeII RGCGCY 2 cut(s) 23, 217
HaeIII GGCC 6 cut(s) 130, 238, 360, 399, 578, 654
HapII CCGG 3 cut(s) 1130, 1208, 1348
HgaI GACGC 2 cut(s) 234, 551
HhaI GCGC 2 cut(s) 22, 216
Hin1I GRCGYC 2 cut(s) 20, 562
Hin1II CATG 9 cut(s) 356, 512, 590, 764, 920, 1034, 1518, 1582, 1591
Hin6I GCGC 2 cut(s) 20, 214
HinP1I GCGC 2 cut(s) 20, 214
HincII GTYRAC 3 cut(s) 435, 1248, 1557
HindII GTYRAC 3 cut(s) 435, 1248, 1557
HindIII AAGCTT 1 cut(s) 1017
HinfI GANTC 4 cut(s) 197, 310, 444, 856
HpaI GTTAAC 1 cut(s) 1248
HpaII CCGG 3 cut(s) 1130, 1208, 1348
HphI GGTGA 5 cut(s) 442, 956, 1048, 1097, 1375
Hpy166II GTNNAC 8 cut(s) 182, 302, 435, 551, 947, 1248, 1292, 1557
Hpy188I TCNGA 7 cut(s) 36, 196, 315, 465, 477, 540, 752
Hpy188III TCNNGA 9 cut(s) 8, 26, 86, 96, 232, 1094, 1106, 1588, 1605
Hpy8I GTNNAC 8 cut(s) 182, 302, 435, 551, 947, 1248, 1292, 1557
HpyAV CCTTC 2 cut(s) 824, 1213
HpyCH4III ACNGT 3 cut(s) 92, 261, 1236
HpyCH4IV ACGT 1 cut(s) 624
HpyCH4V TGCA 7 cut(s) 164, 617, 913, 969, 1240, 1292, 1565
HpyF10VI GCNNNNNNNGC 7 cut(s) 56, 531, 1025, 1123, 1132, 1502, 1571
HpyF3I CTNAG 6 cut(s) 135, 429, 537, 705, 841, 1064
HpySE526I ACGT 1 cut(s) 624
Hsp92I GRCGYC 2 cut(s) 20, 562
Hsp92II CATG 9 cut(s) 356, 512, 590, 764, 920, 1034, 1518, 1582, 1591
HspAI GCGC 2 cut(s) 20, 214
KasI GGCGCC 1 cut(s) 19
KspAI GTTAAC 1 cut(s) 1248
Kzo9I GATC 4 cut(s) 676, 1060, 1511, 1582
LmnI GCTCC 1 cut(s) 683
Lsp1109I GCAGC 3 cut(s) 46, 478, 1558
LweI GCATC 3 cut(s) 173, 900, 922
MaeI CTAG 7 cut(s) 78, 201, 279, 459, 495, 890, 1272
MaeII ACGT 1 cut(s) 624
MaeIII GTNAC 7 cut(s) 386, 407, 568, 931, 1085, 1363, 1470
MalI GATC 4 cut(s) 678, 1062, 1513, 1584
MboI GATC 4 cut(s) 676, 1060, 1511, 1582
MboII GAAGA 6 cut(s) 439, 575, 1006, 1121, 1321, 1324
MflI RGATCY 2 cut(s) 1060, 1582
MhlI GDGCHC 3 cut(s) 362, 735, 1294
MlsI TGGCCA 2 cut(s) 399, 654
MluCI AATT 7 cut(s) 141, 642, 792, 1039, 1071, 1112, 1443
MluNI TGGCCA 2 cut(s) 399, 654
Mly113I GGCGCC 1 cut(s) 20
MlyI GAGTC 1 cut(s) 453
MmeI TCCRAC 1 cut(s) 59
Mox20I TGGCCA 2 cut(s) 399, 654
Mph1103I ATGCAT 1 cut(s) 915
MscI TGGCCA 2 cut(s) 399, 654
MseI TTAA 6 cut(s) 42, 641, 983, 990, 1247, 1479
Msp20I TGGCCA 2 cut(s) 399, 654
MspA1I CMGCKG 1 cut(s) 1571
MspI CCGG 3 cut(s) 1130, 1208, 1348
MspR9I CCNGG 8 cut(s) 240, 440, 575, 681, 1119, 1130, 1167, 1285
Mva1269I GAATGC 1 cut(s) 428
MvaI CCWGG 7 cut(s) 240, 440, 575, 681, 1119, 1167, 1285
MwoI GCNNNNNNNGC 7 cut(s) 56, 531, 1025, 1123, 1132, 1502, 1571
NarI GGCGCC 1 cut(s) 20
NciI CCSGG 1 cut(s) 1130
NdeII GATC 4 cut(s) 676, 1060, 1511, 1582
NlaIII CATG 9 cut(s) 356, 512, 590, 764, 920, 1034, 1518, 1582, 1591
NlaIV GGNNCC 8 cut(s) 21, 94, 118, 129, 350, 360, 685, 1206
NmuCI GTSAC 4 cut(s) 407, 568, 1085, 1363
NsiI ATGCAT 1 cut(s) 915
NspI RCATGY 2 cut(s) 764, 1034
PagI TCATGA 1 cut(s) 1587
PaqCI CACCTGC 1 cut(s) 362
PasI CCCWGGG 2 cut(s) 439, 1284
PceI AGGCCT 1 cut(s) 238
PciI ACATGT 1 cut(s) 1030
PctI GAATGC 1 cut(s) 428
PfeI GAWTC 3 cut(s) 197, 310, 856
PfoI TCCNGGA 1 cut(s) 679
PkrI GCNGC 3 cut(s) 61, 493, 1573
PleI GAGTC 1 cut(s) 452
PluTI GGCGCC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 452
PscI ACATGT 1 cut(s) 1030
Psp6I CCWGG 7 cut(s) 238, 438, 573, 679, 1117, 1165, 1283
PspFI CCCAGC 1 cut(s) 597
PspGI CCWGG 7 cut(s) 238, 438, 573, 679, 1117, 1165, 1283
PspN4I GGNNCC 8 cut(s) 21, 94, 118, 129, 350, 360, 685, 1206
PspOMI GGGCCC 1 cut(s) 358
PspPI GGNCC 5 cut(s) 116, 128, 358, 359, 577
PsuI RGATCY 2 cut(s) 1060, 1582
RsaI GTAC 4 cut(s) 804, 1171, 1233, 1324
RsaNI GTAC 4 cut(s) 803, 1170, 1232, 1323
SaqAI TTAA 6 cut(s) 42, 641, 983, 990, 1247, 1479
SatI GCNGC 3 cut(s) 60, 492, 1572
Sau3AI GATC 4 cut(s) 676, 1060, 1511, 1582
Sau96I GGNCC 5 cut(s) 116, 128, 358, 359, 577
SchI GAGTC 1 cut(s) 453
ScrFI CCNGG 8 cut(s) 240, 440, 575, 681, 1119, 1130, 1167, 1285
SduI GDGCHC 3 cut(s) 362, 735, 1294
SfaNI GCATC 3 cut(s) 173, 900, 922
SfcI CTRYAG 1 cut(s) 412
SfoI GGCGCC 1 cut(s) 21
SgrAI CRCCGGYG 1 cut(s) 1207
SinI GGWCC 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 1185
SmoI CTYRAG 1 cut(s) 1185
SpeI ACTAGT 1 cut(s) 458
Sse9I AATT 7 cut(s) 141, 642, 792, 1039, 1071, 1112, 1443
SseBI AGGCCT 1 cut(s) 238
SsiI CCGC 6 cut(s) 114, 848, 978, 1211, 1393, 1569
SspDI GGCGCC 1 cut(s) 19
SspMI CTAG 7 cut(s) 78, 201, 279, 459, 495, 890, 1272
StuI AGGCCT 1 cut(s) 238
StyD4I CCNGG 8 cut(s) 238, 438, 573, 679, 1117, 1128, 1165, 1283
StyI CCWWGG 1 cut(s) 889
TaaI ACNGT 3 cut(s) 92, 261, 1236
TaiI ACGT 1 cut(s) 627
TaqI TCGA 2 cut(s) 7, 1510
TaqII GACCGA 1 cut(s) 199
TasI AATT 7 cut(s) 141, 642, 792, 1039, 1071, 1112, 1443
TatI WGTACW 1 cut(s) 1231
TfiI GAWTC 3 cut(s) 197, 310, 856
Tru1I TTAA 6 cut(s) 42, 641, 983, 990, 1247, 1479
Tru9I TTAA 6 cut(s) 42, 641, 983, 990, 1247, 1479
TscAI CASTG 7 cut(s) 280, 292, 335, 398, 407, 573, 619
TseFI GTSAC 4 cut(s) 407, 568, 1085, 1363
TseI GCWGC 3 cut(s) 59, 491, 1571
Tsp45I GTSAC 4 cut(s) 407, 568, 1085, 1363
TspDTI ATGAA 4 cut(s) 575, 655, 1567, 1604
TspGWI ACGGA 1 cut(s) 1265
TspRI CASTG 7 cut(s) 280, 292, 335, 398, 407, 573, 619
VneI GTGCAC 1 cut(s) 1290
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 2 cut(s) 1039, 1071
XceI RCATGY 2 cut(s) 764, 1034
XmaJI CCTAGG 1 cut(s) 889
XmiI GTMKAC 2 cut(s) 181, 301
XspI CTAG 7 cut(s) 78, 201, 279, 459, 495, 890, 1272
Zsp2I ATGCAT 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.