MD15G1166500.v1.1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000094
Physical Location & Seq
Reverse (-)
12503515 .. 12506602
3088 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1166500.v1.1.491

Sequence Viewer

Length: 3018 bp
ATGAGAGGTGGTGGAAGATTTTCTAGTGGACCCAGATTCCAGAGGCAGAGGAATTCCGGTGGTGCTGGTGGTTCTGGTGCTCTGTGGTGCCGCCGTTGTAATTTTCGTCATCATGGTAAGTGCAGGAGAGGTGGTGGTGCTTGTTATACTTGTGGGCAAATGGGACATCGGGCTTCTCAATGTCCCCAGGGTCAGCAGAGACCTCAGCAGACCACTATGCCACCTCCAACACCGATTCAGCAGAGCTTTGGACCAGGCAGTTATGGCCAGTCGGGTCGTGGTGGTGCTTACCACTACCAGGGGGATGCTGCTTCGTATGTTTCCGGACCTTATCAGTATCCCCAGGAGACTTATTCTCAGACAGGGGAGGTCAGCCCTGTCATGGGGAAGTTGCTGCTGGTGGTGCAGTCCAATCAGTCAGGCCAGGGACGTACTTCTCAGGGGCGAGGTAATCAAGGCAGCAGAGGTCGTGGTGGACGACAGCAAACTCAAGGGCGTGTTAATCACATCTCACTGCAAGATGCTCAGAACCATCCAGATTTGATCATGGGTACGTTAAATGTTCTTGGTCATTTTGCTAGAGTTTTGATTGATTGTGGTGCTACGCATTCTGTTATTTCTCATACGTTTACTCAAATGACTCAACCTCACCTTTCACCTCTAGGATTTGATTTAGAGTTTGCCATACCTAGAGAAGATAAATGTTATGTTGATAGTGTGTATCTTGGGTGTCCAGTGATGGTAGAGGGCGTAGTTATGCCAGCTGATCTTATTCCGTTAGATATTGTGGATTTTGATGTGATTCTAGGGGCTGATTGGTTGCATTATAATCGTGCCCATATTGATTGTTATGGGAAATCAGTTACTTTTTATCGCCCTGGACTACCCGAGGTTACTTTTGTTGGCGAAAGAAAGGGGATGAGACATGGTGTTATTTCTACCATAAGAGCAAGGAAGTTATTATCGAAGGGTTGTCAAGGATATTCAGCACATGTGGTGTTAAATGATGTTGTTCCCAGCAGTGTAGAAGAAGTTGGTGTGGTCAGGCATTATCCTGATGTATTTCCTGATGATTTACCGGGGTTGCCGCCAGACAGAGATGTGGAATTCTCTATTGATTTGCTTCTAGGTACTGATCCTATATCTCTAACTCCTTATAGAATGGCTCCAGTTGAGTTGAGAGAATTAAAAATTCAGTTACAAGAATTACTTGTTAAAGGTTTCATTCAACCTAGTTCGTCACCTTGGGGAGCTCCAGTATTATTTGTGAGGAAGAAAGATGGAACTCTGAGATTATGCATTGATTATAGGCAATTGAACCGGGTAGCGATTAAAAACCATTATCCATTGCCTCGCATCGATGATTTGTTTGATCAGCTGAAAGGTGTGTGTGTATTCTCTAAGATTGATTTGAGATCTGGTTATTATCAGTTGAAGATTAAAAATAAAGATGTACCTAAGACGGCTTTCCGAACCCATTACGGACATTATGAATTTCTGGTTATGCCATTTGGGTTGACTAATGCACCTGCAGCTTTCATGAGGTTAATGAACAAGGTATTCCAGCAATATCTTGATAAATTTGTTATTGTTTTTATTGATGATATTCTGGTATACTCTAAGTCTAAAGCGGATCATATCCGACACCTTAACTTGGTATTAAAGAAATTGAGGGAACATCAGTTGTATGTCAAGTTCAGTAAATGTCAGTTTTGGTTGACTGAAGTGGCATTTTTTGGGCATGTTGTATCGGCACGAGGAATTCAAGTAGATCCTCAAAAGATAGCAGCAGTGGAGAATTGGGAACAACCTCGAACCGTCACTGAGGTACGAAGTTTTCTTGGTTTGGCAGGTTATTATCGACGGTTTGTTCAGGATTTTTCTATGATTGCCTTGCCGTTAACGAAGTTGACCAGGAAGGATGTTAAATTCGAGTGGGATGAGAATTGTGAGCGGAGTTTCCAGCAATTGAAATATTGCCTCACTCATGCTCCAATATTGGTACTTCCTGATGATAGCGATAATTTTGAGATTTACAGTGATGCTTCCTTGAATGGTTTGGGATGTGTTTTGATGCAGCATAATAGAGTGATTGCCTATGCTTCTCGGCAGTTGAAAAATCATGAAAGGAATTATCCTACTCACGATCTTGAATTGGTAGCCATTATCTTTGCTTTGAAGATTTGGAGGCATTATTTATATGGTGAGAACTGTAAGATCTTCACTGATCACAAGAGTCTCCAGTATCTATTTACTCAACATGATCTTAATCTTCGTCAGCGAAGATGGATGGAATTGCTAAGTGATTATGACTGCACTATTGAGTATCATCCGGGTCGTGCTAATGTGGTAGCTGATGCACTGAGTAGGAAACCTCAAGGTCAACTCAATGCTTTATATGCTTGTCGTGTTCCTCTTCGTGCTGAACTGAGGGCAACTGGAGTAAAGTTGGAGTTGGAAGATCGAAGCAAAGCTTTTCTTGCTAGTTTTCAAGTCAGGCCAGTTTTGGTTGATCGTATACTCGAAGCTCAGATGGTGGATGAGGAAATTCAAGAAATGGTTCAATTAAGAAATGAAGGGAAAAAGAAAGACCTCAGGATTCGAGAATCAGATGGCATGCTTATGCAGGAGAACAGAATGTATGTACCGAATAATGAGGAATTAAAGAAAGAAATTTTGGATGAAACGCATTGTTCAGCTTATGCGATGCACCCAGGAGGAACTAAGATGTATCATACCATTCGACCATTTTATTATTGGCCGGGTATGAAAAGGGAAATTGCAGATTATGTAAGTAGATGTATTATTTGCCAGCAAGTCAAAGCAGAAAGAAATAAGCCTTTTGGGCGAATGCAGCCACTTCCCGTTCCTCAGTGGAAATGGGAAAATATAACTATGGATTTCGTGTATAAGCTTCCTCGTACACGAAATGGATTCGATGGTATTTGGGTGATTGTGGATCGACTTACCAAGTCAGCGCACTTCATTCCAGTGAGGGAAAAGTCACCCTCTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

1006

Amino Acids

114.81

Weight (kDa)

9.09

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC PF00098 47 - 63 1.8e-06 Zinc knuckle
RVP_2 PF08284 163 - 292 7.2e-33 Retroviral aspartyl protease
RVT_1 PF00078 423 - 582 3e-38 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 646 - 739 2e-30 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 671 - 770 3.1e-34 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 885 - 942 8.7e-19 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 828
AarI CACCTGC 1 cut(s) 1537
Acc36I ACCTGC 2 cut(s) 1537, 1841
AccB1I GGYRCC 1 cut(s) 87
AccBSI CCGCTC 1 cut(s) 1954
AccI GTMKAC 2 cut(s) 1614, 2518
AccIII TCCGGA 1 cut(s) 323
AciI CCGC 4 cut(s) 91, 1088, 1631, 1954
AclWI GGATC 4 cut(s) 1130, 1641, 1766, 2967
AcoI YGGCCR 2 cut(s) 265, 2759
AcsI RAATTY 9 cut(s) 52, 1106, 1191, 1493, 1580, 1761, 1928, 2547, 2673
AcuI CTGAAG 1 cut(s) 1743
AfaI GTAC 8 cut(s) 433, 553, 1132, 1455, 1830, 2004, 2646, 2923
AfiI CCNNNNNNNGG 4 cut(s) 298, 382, 383, 1654
AflIII ACRYGT 1 cut(s) 991
AjnI CCWGG 8 cut(s) 186, 253, 297, 342, 423, 877, 1913, 2713
AjuI GAANNNNNNNTTGG 2 cut(s) 2660, 2692
Alw21I GWGCWC 2 cut(s) 82, 1255
Alw26I GTCTC 4 cut(s) 193, 341, 916, 2243
AlwI GGATC 4 cut(s) 1130, 1641, 1766, 2967
Ama87I CYCGRG 1 cut(s) 887
Aor13HI TCCGGA 1 cut(s) 323
AoxI GGCC 4 cut(s) 265, 421, 2498, 2759
ApeKI GCWGC 7 cut(s) 308, 394, 459, 1532, 1787, 2077, 2854
ApoI RAATTY 9 cut(s) 52, 1106, 1191, 1493, 1580, 1761, 1928, 2547, 2673
Asp700I GAANNNNTTC 2 cut(s) 19, 2559
AspLEI GCGC 1 cut(s) 2980
AspS9I GGNCC 3 cut(s) 29, 251, 326
AsuC2I CCSGG 4 cut(s) 1080, 1322, 2334, 2763
AsuHPI GGTGA 6 cut(s) 641, 648, 1233, 2216, 2962, 2997
AvaI CYCGRG 1 cut(s) 887
AvaII GGWCC 3 cut(s) 29, 251, 326
AxyI CCTNAGG 1 cut(s) 2594
BaeGI GKGCMC 1 cut(s) 838
BalI TGGCCA 1 cut(s) 267
BanI GGYRCC 1 cut(s) 87
BanII GRGCYC 1 cut(s) 1255
BauI CACGAG 1 cut(s) 1755
Bbv12I GWGCWC 2 cut(s) 82, 1255
BbvCI CCTCAGC 1 cut(s) 204
BbvI GCAGC 7 cut(s) 295, 381, 471, 1544, 1799, 2089, 2866
BccI CCATC 8 cut(s) 540, 733, 1274, 2280, 2284, 2527, 2606, 2933
BceAI ACGGC 3 cut(s) 78, 1479, 1882
BcgI CGANNNNNNTGC 2 cut(s) 812, 846
BciT130I CCWGG 8 cut(s) 188, 255, 299, 344, 425, 879, 1915, 2715
BciVI GTATCC 1 cut(s) 348
BclI TGATCA 3 cut(s) 543, 1372, 2227
BcnI CCSGG 4 cut(s) 1080, 1322, 2334, 2763
BcoDI GTCTC 4 cut(s) 193, 341, 916, 2243
BfaI CTAG 8 cut(s) 24, 579, 662, 690, 806, 1127, 1233, 2484
BfmI CTRYAG 1 cut(s) 1530
BfuAI ACCTGC 2 cut(s) 1537, 1841
BfuI GTATCC 1 cut(s) 348
BglI GCCNNNNNGGC 1 cut(s) 2845
BglII AGATCT 2 cut(s) 1415, 2217
BisI GCNGC 9 cut(s) 91, 309, 395, 460, 1088, 1533, 1788, 2078, 2855
BlsI GCNGC 9 cut(s) 92, 310, 396, 461, 1089, 1534, 1789, 2079, 2856
Bme18I GGWCC 3 cut(s) 29, 251, 326
BmeT110I CYCGRG 1 cut(s) 887
BmgT120I GGNCC 3 cut(s) 29, 251, 326
BmiI GGNNCC 3 cut(s) 31, 89, 1167
BmsI GCATC 7 cut(s) 295, 511, 1365, 2032, 2064, 2347, 2697
BpmI CTGGAG 4 cut(s) 1152, 1239, 2225, 2460
Bpu10I CCTNAGC 1 cut(s) 204
BpuEI CTTGAG 2 cut(s) 474, 2361
BpuMI CCSGG 4 cut(s) 1080, 1322, 2334, 2763
Bsa29I ATCGAT 1 cut(s) 1359
BsaBI GATNNNNATC 1 cut(s) 2268
BsaI GGTCTC 1 cut(s) 193
BsaWI WCCGGW 2 cut(s) 56, 323
BsaXI ACNNNNNCTCC 6 cut(s) 118, 148, 1242, 1272, 1975, 2005
Bsc4I CCNNNNNNNGG 4 cut(s) 298, 382, 383, 1654
Bse1I ACTGG 8 cut(s) 268, 734, 1169, 1256, 2242, 2443, 2501, 2990
Bse21I CCTNAGG 1 cut(s) 2594
Bse3DI GCAATG 1 cut(s) 1346
Bse8I GATNNNNATC 1 cut(s) 2268
BseAI TCCGGA 1 cut(s) 323
BseBI CCWGG 8 cut(s) 188, 255, 299, 344, 425, 879, 1915, 2715
BseCI ATCGAT 1 cut(s) 1359
BseJI GATNNNNATC 1 cut(s) 2268
BseLI CCNNNNNNNGG 4 cut(s) 298, 382, 383, 1654
BseMI GCAATG 1 cut(s) 1346
BseNI ACTGG 8 cut(s) 268, 734, 1169, 1256, 2242, 2443, 2501, 2990
BseSI GKGCMC 1 cut(s) 838
BseXI GCAGC 7 cut(s) 295, 381, 471, 1544, 1799, 2089, 2866
BseYI CCCAGC 1 cut(s) 1016
BsgI GTGCAG 3 cut(s) 142, 425, 2299
BshFI GGCC 4 cut(s) 267, 423, 2500, 2761
BshNI GGYRCC 1 cut(s) 87
BshVI ATCGAT 1 cut(s) 1359
BsiHKAI GWGCWC 2 cut(s) 82, 1255
BsiHKCI CYCGRG 1 cut(s) 887
BsiSI CCGG 6 cut(s) 57, 324, 1079, 1321, 2333, 2762
BslFI GGGAC 3 cut(s) 168, 177, 441
BslI CCNNNNNNNGG 4 cut(s) 298, 382, 383, 1654
BsmAI GTCTC 4 cut(s) 193, 341, 916, 2243
BsmFI GGGAC 3 cut(s) 168, 177, 441
BsmI GAATGC 2 cut(s) 607, 2856
BsnI GGCC 4 cut(s) 267, 423, 2500, 2761
Bso31I GGTCTC 1 cut(s) 193
BsoBI CYCGRG 1 cut(s) 887
Bsp1286I GDGCHC 3 cut(s) 82, 838, 1255
Bsp13I TCCGGA 1 cut(s) 323
BspACI CCGC 4 cut(s) 91, 1088, 1631, 1954
BspANI GGCC 4 cut(s) 267, 423, 2500, 2761
BspDI ATCGAT 1 cut(s) 1359
BspEI TCCGGA 1 cut(s) 323
BspHI TCATGA 2 cut(s) 1539, 2122
BspLI GGNNCC 3 cut(s) 31, 89, 1167
BspMAI CTGCAG 1 cut(s) 1534
BspMI ACCTGC 2 cut(s) 1537, 1841
BspPI GGATC 4 cut(s) 1130, 1641, 1766, 2967
BspT107I GGYRCC 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 193
BsrBI CCGCTC 1 cut(s) 1954
BsrDI GCAATG 1 cut(s) 1346
BsrI ACTGG 8 cut(s) 268, 734, 1169, 1256, 2242, 2443, 2501, 2990
BssNAI GTATAC 2 cut(s) 1615, 2519
BssSI CACGAG 1 cut(s) 1755
BssT1I CCWWGG 1 cut(s) 1244
Bst1107I GTATAC 2 cut(s) 1615, 2519
Bst2BI CACGAG 1 cut(s) 1755
Bst2UI CCWGG 8 cut(s) 188, 255, 299, 344, 425, 879, 1915, 2715
Bst4CI ACNGT 4 cut(s) 1819, 1866, 2039, 2213
Bst6I CTCTTC 1 cut(s) 2421
BstC8I GCNNGC 3 cut(s) 762, 2618, 2813
BstHHI GCGC 1 cut(s) 2980
BstMAI GTCTC 4 cut(s) 193, 341, 916, 2243
BstMWI GCNNNNNNNGC 7 cut(s) 264, 403, 1532, 2399, 2480, 2845, 2854
BstNI CCWGG 8 cut(s) 188, 255, 299, 344, 425, 879, 1915, 2715
BstNSI RCATGY 3 cut(s) 995, 1745, 2620
BstSFI CTRYAG 1 cut(s) 1530
BstSLI GKGCMC 1 cut(s) 838
BstV1I GCAGC 7 cut(s) 295, 381, 471, 1544, 1799, 2089, 2866
BstX2I RGATCY 3 cut(s) 1415, 1771, 2217
BstYI RGATCY 3 cut(s) 1415, 1771, 2217
BstZ17I GTATAC 2 cut(s) 1615, 2519
Bsu15I ATCGAT 1 cut(s) 1359
Bsu36I CCTNAGG 1 cut(s) 2594
BsuI GTATCC 1 cut(s) 348
BsuRI GGCC 4 cut(s) 267, 423, 2500, 2761
BsuTUI ATCGAT 1 cut(s) 1359
BtgZI GCGATG 1 cut(s) 2720
BtsI GCAGTG 3 cut(s) 512, 1027, 1797
BveI ACCTGC 2 cut(s) 1537, 1841
Cac8I GCNNGC 3 cut(s) 762, 2618, 2813
CciI TCATGA 2 cut(s) 1539, 2122
CfoI GCGC 1 cut(s) 2980
Cfr13I GGNCC 3 cut(s) 29, 251, 326
ClaI ATCGAT 1 cut(s) 1359
Csp6I GTAC 8 cut(s) 432, 552, 1131, 1454, 1829, 2003, 2645, 2922
CviQI GTAC 8 cut(s) 432, 552, 1131, 1454, 1829, 2003, 2645, 2922
EaeI YGGCCR 2 cut(s) 265, 2759
Eam1104I CTCTTC 1 cut(s) 2421
EarI CTCTTC 1 cut(s) 2421
Ecl136II GAGCTC 1 cut(s) 1253
Eco130I CCWWGG 1 cut(s) 1244
Eco24I GRGCYC 1 cut(s) 1255
Eco31I GGTCTC 1 cut(s) 193
Eco47I GGWCC 3 cut(s) 29, 251, 326
Eco53kI GAGCTC 1 cut(s) 1253
Eco57I CTGAAG 1 cut(s) 1743
Eco81I CCTNAGG 1 cut(s) 2594
Eco88I CYCGRG 1 cut(s) 887
EcoICRI GAGCTC 1 cut(s) 1253
EcoRI GAATTC 3 cut(s) 52, 1106, 1761
EcoRII CCWGG 8 cut(s) 186, 253, 297, 342, 423, 877, 1913, 2713
EcoT14I CCWWGG 1 cut(s) 1244
EcoT22I ATGCAT 1 cut(s) 1301
EcoT38I GRGCYC 1 cut(s) 1255
ErhI CCWWGG 1 cut(s) 1244
FalI AAGNNNNNCTT 6 cut(s) 1194, 1226, 2458, 2490, 2463, 2495
FaqI GGGAC 3 cut(s) 168, 177, 441
FbaI TGATCA 3 cut(s) 543, 1372, 2227
FblI GTMKAC 2 cut(s) 1614, 2518
Fnu4HI GCNGC 9 cut(s) 91, 309, 395, 460, 1088, 1533, 1788, 2078, 2855
FriOI GRGCYC 1 cut(s) 1255
Fsp4HI GCNGC 9 cut(s) 91, 309, 395, 460, 1088, 1533, 1788, 2078, 2855
FspBI CTAG 8 cut(s) 24, 579, 662, 690, 806, 1127, 1233, 2484
GlaI GCGC 1 cut(s) 2979
GluI GCNGC 9 cut(s) 91, 309, 395, 460, 1088, 1533, 1788, 2078, 2855
GsaI CCCAGC 1 cut(s) 1020
GsuI CTGGAG 4 cut(s) 1152, 1239, 2225, 2460
HaeIII GGCC 4 cut(s) 267, 423, 2500, 2761
HapII CCGG 6 cut(s) 57, 324, 1079, 1321, 2333, 2762
HhaI GCGC 1 cut(s) 2980
Hin6I GCGC 1 cut(s) 2978
HinP1I GCGC 1 cut(s) 2978
HincII GTYRAC 5 cut(s) 1518, 1719, 1902, 1911, 2384
HindII GTYRAC 5 cut(s) 1518, 1719, 1902, 1911, 2384
HindIII AAGCTT 2 cut(s) 2472, 2912
HinfI GANTC 8 cut(s) 36, 235, 640, 802, 2236, 2599, 2606, 2934
HpaI GTTAAC 1 cut(s) 1902
HpaII CCGG 6 cut(s) 57, 324, 1079, 1321, 2333, 2762
HphI GGTGA 6 cut(s) 641, 648, 1233, 2216, 2962, 2997
Hpy188I TCNGA 8 cut(s) 360, 528, 1290, 1472, 1643, 2532, 2611, 3013
Hpy99I CGWCG 1 cut(s) 1866
HpyAV CCTTC 3 cut(s) 961, 1912, 2570
HpyCH4III ACNGT 4 cut(s) 1819, 1866, 2039, 2213
HpyCH4IV ACGT 3 cut(s) 430, 554, 626
HpyF10VI GCNNNNNNNGC 7 cut(s) 264, 403, 1532, 2399, 2480, 2845, 2854
HpySE526I ACGT 3 cut(s) 430, 554, 626
HspAI GCGC 1 cut(s) 2978
Kpn2I TCCGGA 1 cut(s) 323
Ksp22I TGATCA 3 cut(s) 543, 1372, 2227
KspAI GTTAAC 1 cut(s) 1902
LmnI GCTCC 4 cut(s) 1171, 1250, 1258, 1996
Lsp1109I GCAGC 7 cut(s) 295, 381, 471, 1544, 1799, 2089, 2866
LweI GCATC 7 cut(s) 295, 511, 1365, 2032, 2064, 2347, 2697
MaeI CTAG 8 cut(s) 24, 579, 662, 690, 806, 1127, 1233, 2484
MaeII ACGT 3 cut(s) 430, 554, 626
MaeIII GTNAC 6 cut(s) 862, 892, 1197, 1239, 1819, 3003
MbiI CCGCTC 1 cut(s) 1954
MfeI CAATTG 2 cut(s) 1313, 1967
MflI RGATCY 3 cut(s) 1415, 1771, 2217
MhlI GDGCHC 3 cut(s) 82, 838, 1255
MlsI TGGCCA 1 cut(s) 267
MluNI TGGCCA 1 cut(s) 267
MlyI GAGTC 2 cut(s) 634, 2245
MmeI TCCRAC 4 cut(s) 251, 1666, 2430, 2436
Mox20I TGGCCA 1 cut(s) 267
Mph1103I ATGCAT 1 cut(s) 1301
MroI TCCGGA 1 cut(s) 323
MroXI GAANNNNTTC 2 cut(s) 19, 2559
MscI TGGCCA 1 cut(s) 267
MslI CAYNNNNRTG 2 cut(s) 2621, 2990
Msp20I TGGCCA 1 cut(s) 267
MspA1I CMGCKG 2 cut(s) 764, 1378
MspI CCGG 6 cut(s) 57, 324, 1079, 1321, 2333, 2762
MunI CAATTG 2 cut(s) 1313, 1967
Mva1269I GAATGC 2 cut(s) 607, 2856
MvaI CCWGG 8 cut(s) 188, 255, 299, 344, 425, 879, 1915, 2715
MwoI GCNNNNNNNGC 7 cut(s) 264, 403, 1532, 2399, 2480, 2845, 2854
NciI CCSGG 4 cut(s) 1080, 1322, 2334, 2763
NlaIV GGNNCC 3 cut(s) 31, 89, 1167
NmeAIII GCCGAG 1 cut(s) 2086
NmuCI GTSAC 3 cut(s) 1239, 1819, 3003
NsiI ATGCAT 1 cut(s) 1301
NspI RCATGY 3 cut(s) 995, 1745, 2620
PaeI GCATGC 1 cut(s) 2620
PagI TCATGA 2 cut(s) 1539, 2122
PaqCI CACCTGC 1 cut(s) 1537
PasI CCCWGGG 1 cut(s) 187
PciI ACATGT 1 cut(s) 991
PcsI WCGNNNNNNNCGW 1 cut(s) 475
PctI GAATGC 2 cut(s) 607, 2856
PdmI GAANNNNTTC 2 cut(s) 19, 2559
PfeI GAWTC 6 cut(s) 36, 235, 802, 2599, 2606, 2934
PkrI GCNGC 9 cut(s) 92, 310, 396, 461, 1089, 1534, 1789, 2079, 2856
PleI GAGTC 2 cut(s) 634, 2244
PpsI GAGTC 2 cut(s) 634, 2244
PscI ACATGT 1 cut(s) 991
PsiI TTATAA 1 cut(s) 828
Psp124BI GAGCTC 1 cut(s) 1255
Psp6I CCWGG 8 cut(s) 186, 253, 297, 342, 423, 877, 1913, 2713
PspFI CCCAGC 1 cut(s) 1016
PspGI CCWGG 8 cut(s) 186, 253, 297, 342, 423, 877, 1913, 2713
PspN4I GGNNCC 3 cut(s) 31, 89, 1167
PspPI GGNCC 3 cut(s) 29, 251, 326
PsrI GAACNNNNNNTAC 2 cut(s) 1679, 1711
PstI CTGCAG 1 cut(s) 1534
PsuI RGATCY 3 cut(s) 1415, 1771, 2217
PvuII CAGCTG 2 cut(s) 764, 1378
RsaI GTAC 8 cut(s) 433, 553, 1132, 1455, 1830, 2004, 2646, 2923
RsaNI GTAC 8 cut(s) 432, 552, 1131, 1454, 1829, 2003, 2645, 2922
RseI CAYNNNNRTG 2 cut(s) 2621, 2990
SacI GAGCTC 1 cut(s) 1255
SatI GCNGC 9 cut(s) 91, 309, 395, 460, 1088, 1533, 1788, 2078, 2855
Sau96I GGNCC 3 cut(s) 29, 251, 326
SchI GAGTC 2 cut(s) 634, 2245
SduI GDGCHC 3 cut(s) 82, 838, 1255
SfaNI GCATC 7 cut(s) 295, 511, 1365, 2032, 2064, 2347, 2697
SfcI CTRYAG 1 cut(s) 1530
SinI GGWCC 3 cut(s) 29, 251, 326
SmiMI CAYNNNNRTG 2 cut(s) 2621, 2990
SmlI CTYRAG 2 cut(s) 489, 2376
SmoI CTYRAG 2 cut(s) 489, 2376
SphI GCATGC 1 cut(s) 2620
SsiI CCGC 4 cut(s) 91, 1088, 1631, 1954
SspI AATATT 2 cut(s) 1976, 1998
SspMI CTAG 8 cut(s) 24, 579, 662, 690, 806, 1127, 1233, 2484
SstI GAGCTC 1 cut(s) 1255
StyI CCWWGG 1 cut(s) 1244
TaaI ACNGT 4 cut(s) 1819, 1866, 2039, 2213
TaiI ACGT 3 cut(s) 433, 557, 629
TauI GCSGC 2 cut(s) 93, 1090
TfiI GAWTC 6 cut(s) 36, 235, 802, 2599, 2606, 2934
TseFI GTSAC 3 cut(s) 1239, 1819, 3003
TseI GCWGC 7 cut(s) 308, 394, 459, 1532, 1787, 2077, 2854
Tsp45I GTSAC 3 cut(s) 1239, 1819, 3003
TspDTI ATGAA 9 cut(s) 1213, 1506, 1528, 1565, 2139, 2589, 2697, 2783, 2974
TspGWI ACGGA 2 cut(s) 765, 1497
VpaK11BI GGWCC 3 cut(s) 29, 251, 326
XapI RAATTY 9 cut(s) 52, 1106, 1191, 1493, 1580, 1761, 1928, 2547, 2673
XceI RCATGY 3 cut(s) 995, 1745, 2620
XcmI CCANNNNNNNNNTGG 2 cut(s) 275, 2754
XmiI GTMKAC 2 cut(s) 1614, 2518
XmnI GAANNNNTTC 2 cut(s) 19, 2559
XspI CTAG 8 cut(s) 24, 579, 662, 690, 806, 1127, 1233, 2484
Zsp2I ATGCAT 1 cut(s) 1301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.