FvH4_5g38171

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000094
Physical Location & Seq
Forward (+)
28222597 .. 28225183
2587 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38171.t1

Sequence Viewer

Length: 2403 bp
ATGTCTCCATGGGGTGCTCCAGTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGGAAGCTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTATCATCAGTTACGGATCCGAGAGGGGGACATAGCCAAGACTGCTTTTCGGTCACGATATGGTCATTATGAATTTGTGGTGATGCCTTTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATATCTTGATCGTTTCGTGATCGTATTCATAGATGATATCTTGGTTTACTCAAGAAGTGAGAAAGAGCATGCCAAGCATCTAAGAATAATATTGCGGACCTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTTGATAAAGTGGGGTTCTTGGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGCTACTCCTCTCACAACGTTGACCAGAAAAGGGGTTAAGTTTGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCGGTAGTTTTTGCCCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAAAGAGAGCTTAATATGAGACAGAGAAGATGGATGGAGTTAATCAGTGATTATGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTGTCAGTGGATAAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATTCTTCCATAGTTCGATTGATGGAAAGAGCTTCGAATAGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGGGACTCTATTGTTTAAAAATCGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCATAGTTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCAAGGCTGAAAGGCAGAAGCCTTCAGGATTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGCTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTAGATAAATTGGCGGAGCTCTATGTGAATGAAATTGTGAGGCTTCACGGTGTTCCTGAATCAATAGTGTCAGATCGGGATCCTCGATTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGTTCAGAGGTAGTTGGGATAAGAACCTATCTTTGATGGAATTTGCCTATAATAATAGCTATCATTCTAGCATTGGTATGGCGCCCTTTGAGGCTCTTTATGGGAGGCAGTGTCGCACGCCTTTGTGTTGGAATGAAGTAGGGGAAAAAGAGCTTTGTGGCCCAGAATTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAAGACTGCTCAGAGTAGGCAGAAAAGTTATGCGGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTGGGTGTTCCTGAAATTATCTCCTTGGAAAGGGATTGTGCGTTTCGGTAAGCGTGGGAAGCTTAGCCCGAGATATATTGGCCCTTATGAGATTATAGAGCGAGTTGGCTCACTTGCTTATCGATTAGCCTTGCCTCCAGAGTTAGCCAGGATACATAAGGTGTTTCATGTATCCATGCTTCGCAAAGGAACCGGTTCAGATTCTCGACCGAAAGGAGCAGGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

801

Amino Acids

92.28

Weight (kDa)

9.53

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 11 - 169 5.4e-36 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 196 - 290 1.9e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 222 - 320 5.4e-33 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 435 - 492 2e-20 Integrase zinc binding domain
SH3_Tf2-1 PF24626 724 - 787 3.5e-26 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2384
Acc36I ACCTGC 1 cut(s) 2384
Acc65I GGTACC 1 cut(s) 1787
AccB1I GGYRCC 4 cut(s) 47, 149, 1787, 1969
AccII CGCG 1 cut(s) 296
AccIII TCCGGA 1 cut(s) 658
AclI AACGTT 1 cut(s) 557
AclWI GGATC 6 cut(s) 128, 196, 209, 315, 1733, 1746
AcoI YGGCCR 1 cut(s) 1409
AcsI RAATTY 4 cut(s) 257, 1757, 1928, 2159
AcuI CTGAAG 3 cut(s) 1476, 1757, 1786
AcyI GRCGYC 1 cut(s) 1970
AfaI GTAC 2 cut(s) 1573, 1789
AfiI CCNNNNNNNGG 5 cut(s) 211, 570, 776, 1581, 2204
AgeI ACCGGT 1 cut(s) 2366
AgsI TTSAA 9 cut(s) 534, 584, 614, 622, 766, 1315, 1393, 2159, 2165
AjiI CACGTC 1 cut(s) 704
AjnI CCWGG 2 cut(s) 982, 2321
Alw21I GWGCWC 4 cut(s) 19, 643, 1680, 1771
Alw26I GTCTC 4 cut(s) 9, 49, 832, 919
AlwI GGATC 6 cut(s) 128, 196, 209, 315, 1733, 1746
Ama87I CYCGRG 1 cut(s) 2242
Aor13HI TCCGGA 1 cut(s) 658
AoxI GGCC 4 cut(s) 1145, 1409, 2047, 2254
ApeKI GCWGC 6 cut(s) 727, 809, 1232, 1355, 1433, 1778
ApoI RAATTY 4 cut(s) 257, 1757, 1928, 2159
AseI ATTAAT 1 cut(s) 2057
AsiGI ACCGGT 1 cut(s) 2366
Asp700I GAANNNNTTC 1 cut(s) 2368
Asp718I GGTACC 1 cut(s) 1787
AspLEI GCGC 2 cut(s) 516, 1972
AspS9I GGNCC 4 cut(s) 429, 1534, 2048, 2255
AsuC2I CCSGG 1 cut(s) 1365
AsuHPI GGTGA 5 cut(s) 277, 1534, 1609, 1612, 2183
AsuII TTCGAA 1 cut(s) 1220
AvaI CYCGRG 1 cut(s) 2242
AvaII GGWCC 2 cut(s) 429, 1534
BalI TGGCCA 1 cut(s) 1411
BamHI GGATCC 2 cut(s) 201, 1738
BanI GGYRCC 4 cut(s) 47, 149, 1787, 1969
BanII GRGCYC 2 cut(s) 1680, 1771
BarI GAAGNNNNNNTAC 2 cut(s) 2337, 2369
BbsI GAAGAC 1 cut(s) 881
Bbv12I GWGCWC 4 cut(s) 19, 643, 1680, 1771
BbvI GCAGC 6 cut(s) 739, 821, 1244, 1342, 1445, 1790
BccI CCATC 9 cut(s) 38, 930, 934, 1045, 1201, 1253, 1574, 1823, 1918
BceAI ACGGC 1 cut(s) 1492
BcgI CGANNNNNNTGC 2 cut(s) 716, 750
BciT130I CCWGG 2 cut(s) 984, 2323
BciVI GTATCC 2 cut(s) 2319, 2356
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 1 cut(s) 1365
BcoDI GTCTC 4 cut(s) 9, 49, 832, 919
BfaI CTAG 4 cut(s) 699, 710, 756, 1956
BfmI CTRYAG 1 cut(s) 1086
BfoI RGCGCY 2 cut(s) 517, 1973
BfuAI ACCTGC 1 cut(s) 2384
BfuI GTATCC 2 cut(s) 2319, 2356
BglII AGATCT 1 cut(s) 2152
BisI GCNGC 9 cut(s) 297, 728, 770, 810, 1230, 1233, 1356, 1434, 1779
BlpI GCTNAGC 1 cut(s) 2237
BlsI GCNGC 9 cut(s) 298, 729, 771, 811, 1231, 1234, 1357, 1435, 1780
Bme1390I CCNGG 3 cut(s) 984, 1365, 2323
Bme18I GGWCC 2 cut(s) 429, 1534
BmeT110I CYCGRG 1 cut(s) 2242
BmgBI CACGTC 1 cut(s) 704
BmgT120I GGNCC 4 cut(s) 429, 1534, 2048, 2255
BmiI GGNNCC 9 cut(s) 49, 151, 203, 856, 1535, 1740, 1789, 1971, 2365
BmrFI CCNGG 3 cut(s) 984, 1365, 2323
BmsI GCATC 5 cut(s) 258, 418, 682, 714, 997
BpiI GAAGAC 1 cut(s) 881
BplI GAGNNNNNCTC 2 cut(s) 2085, 2117
BpmI CTGGAG 2 cut(s) 821, 2295
Bpu1102I GCTNAGC 1 cut(s) 2237
Bpu14I TTCGAA 1 cut(s) 1220
BpuEI CTTGAG 4 cut(s) 367, 812, 1523, 2087
BpuMI CCSGG 1 cut(s) 1365
Bsa29I ATCGAT 2 cut(s) 123, 2296
BsaBI GATNNNNATC 1 cut(s) 1737
BsaHI GRCGYC 1 cut(s) 1970
BsaJI CCNNGG 6 cut(s) 8, 116, 294, 432, 1545, 2198
BsaWI WCCGGW 2 cut(s) 658, 2366
BsaXI ACNNNNNCTCC 8 cut(s) 625, 655, 663, 693, 1853, 1883, 1984, 2014
Bsc4I CCNNNNNNNGG 5 cut(s) 211, 570, 776, 1581, 2204
Bse118I RCCGGY 1 cut(s) 2366
Bse1I ACTGG 5 cut(s) 20, 1131, 1148, 1520, 1640
Bse8I GATNNNNATC 1 cut(s) 1737
BseAI TCCGGA 1 cut(s) 658
BseBI CCWGG 2 cut(s) 984, 2323
BseCI ATCGAT 2 cut(s) 123, 2296
BseDI CCNNGG 6 cut(s) 8, 116, 294, 432, 1545, 2198
BseGI GGATG 6 cut(s) 667, 945, 979, 1360, 1816, 2143
BseJI GATNNNNATC 1 cut(s) 1737
BseLI CCNNNNNNNGG 5 cut(s) 211, 570, 776, 1581, 2204
BseMII CTCAG 2 cut(s) 1835, 2126
BseNI ACTGG 5 cut(s) 20, 1131, 1148, 1520, 1640
BseRI GAGGAG 1 cut(s) 537
BseXI GCAGC 6 cut(s) 739, 821, 1244, 1342, 1445, 1790
BsgI GTGCAG 1 cut(s) 1611
Bsh1236I CGCG 1 cut(s) 296
Bsh1285I CGRYCG 1 cut(s) 2384
BshFI GGCC 4 cut(s) 1147, 1411, 2049, 2256
BshNI GGYRCC 4 cut(s) 47, 149, 1787, 1969
BshTI ACCGGT 1 cut(s) 2366
BshVI ATCGAT 2 cut(s) 123, 2296
BsiEI CGRYCG 1 cut(s) 2384
BsiHKAI GWGCWC 4 cut(s) 19, 643, 1680, 1771
BsiHKCI CYCGRG 1 cut(s) 2242
BsiSI CCGG 3 cut(s) 659, 1364, 2367
BslFI GGGAC 3 cut(s) 227, 1276, 1547
BslI CCNNNNNNNGG 5 cut(s) 211, 570, 776, 1581, 2204
BsmAI GTCTC 4 cut(s) 9, 49, 832, 919
BsmFI GGGAC 3 cut(s) 227, 1276, 1547
BsnI GGCC 4 cut(s) 1147, 1411, 2049, 2256
BsoBI CYCGRG 1 cut(s) 2242
Bsp119I TTCGAA 1 cut(s) 1220
Bsp1286I GDGCHC 4 cut(s) 19, 643, 1680, 1771
Bsp13I TCCGGA 1 cut(s) 658
Bsp1720I GCTNAGC 1 cut(s) 2237
Bsp19I CCATGG 2 cut(s) 8, 1545
BspANI GGCC 4 cut(s) 1147, 1411, 2049, 2256
BspCNI CTCAG 2 cut(s) 1834, 2125
BspDI ATCGAT 2 cut(s) 123, 2296
BspEI TCCGGA 1 cut(s) 658
BspFNI CGCG 1 cut(s) 296
BspHI TCATGA 2 cut(s) 312, 793
BspLI GGNNCC 9 cut(s) 49, 151, 203, 856, 1535, 1740, 1789, 1971, 2365
BspMI ACCTGC 1 cut(s) 2384
BspPI GGATC 6 cut(s) 128, 196, 209, 315, 1733, 1746
BspQI GCTCTTC 1 cut(s) 1776
BspT104I TTCGAA 1 cut(s) 1220
BspT107I GGYRCC 4 cut(s) 47, 149, 1787, 1969
BsrFI RCCGGY 1 cut(s) 2366
BsrI ACTGG 5 cut(s) 20, 1131, 1148, 1520, 1640
BssAI RCCGGY 1 cut(s) 2366
BssECI CCNNGG 6 cut(s) 8, 116, 294, 432, 1545, 2198
BssNI GRCGYC 1 cut(s) 1970
BssT1I CCWWGG 4 cut(s) 8, 432, 1545, 2198
Bst2UI CCWGG 2 cut(s) 984, 2323
Bst4CI ACNGT 4 cut(s) 94, 1179, 1592, 1709
Bst6I CTCTTC 6 cut(s) 1249, 1302, 1310, 1415, 1776, 1805
BstACI GRCGYC 1 cut(s) 1970
BstAPI GCANNNNNTGC 1 cut(s) 1355
BstBI TTCGAA 1 cut(s) 1220
BstC8I GCNNGC 5 cut(s) 402, 602, 807, 1083, 2006
BstDEI CTNAG 7 cut(s) 413, 456, 1013, 1821, 2112, 2237, 2400
BstDSI CCRYGG 3 cut(s) 8, 294, 1545
BstENI CCTNNNNNAGG 1 cut(s) 2202
BstF5I GGATG 6 cut(s) 667, 945, 979, 1360, 1816, 2143
BstFNI CGCG 1 cut(s) 296
BstH2I RGCGCY 2 cut(s) 517, 1973
BstHHI GCGC 2 cut(s) 516, 1972
BstMAI GTCTC 4 cut(s) 9, 49, 832, 919
BstMCI CGRYCG 1 cut(s) 2384
BstMWI GCNNNNNNNGC 8 cut(s) 227, 296, 406, 766, 1127, 1355, 1775, 2233
BstNI CCWGG 2 cut(s) 984, 2323
BstNSI RCATGY 1 cut(s) 404
BstSCI CCNGG 3 cut(s) 982, 1363, 2321
BstSFI CTRYAG 1 cut(s) 1086
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 6 cut(s) 739, 821, 1244, 1342, 1445, 1790
BstV2I GAAGAC 1 cut(s) 881
BstX2I RGATCY 4 cut(s) 201, 307, 1738, 2152
BstYI RGATCY 4 cut(s) 201, 307, 1738, 2152
Bsu15I ATCGAT 2 cut(s) 123, 2296
BsuI GTATCC 2 cut(s) 2319, 2356
BsuRI GGCC 4 cut(s) 1147, 1411, 2049, 2256
BsuTUI ATCGAT 2 cut(s) 123, 2296
BtgI CCRYGG 3 cut(s) 8, 294, 1545
BtrI CACGTC 1 cut(s) 704
BtsCI GGATG 6 cut(s) 667, 945, 979, 1360, 1816, 2143
BtsI GCAGTG 2 cut(s) 1806, 2003
BtsIMutI CAGTG 9 cut(s) 27, 99, 602, 958, 1110, 1527, 1647, 1806, 2003
BveI ACCTGC 1 cut(s) 2384
Cac8I GCNNGC 5 cut(s) 402, 602, 807, 1083, 2006
CciI TCATGA 2 cut(s) 312, 793
CfoI GCGC 2 cut(s) 516, 1972
Cfr10I RCCGGY 1 cut(s) 2366
Cfr13I GGNCC 4 cut(s) 429, 1534, 2048, 2255
Cfr42I CCGCGG 1 cut(s) 297
ClaI ATCGAT 2 cut(s) 123, 2296
Csp6I GTAC 2 cut(s) 1572, 1788
CspAI ACCGGT 1 cut(s) 2366
CviQI GTAC 2 cut(s) 1572, 1788
DdeI CTNAG 7 cut(s) 413, 456, 1013, 1821, 2112, 2237, 2400
DinI GGCGCC 1 cut(s) 1971
DraI TTTAAA 1 cut(s) 1276
EaeI YGGCCR 1 cut(s) 1409
Eam1104I CTCTTC 6 cut(s) 1249, 1302, 1310, 1415, 1776, 1805
EarI CTCTTC 6 cut(s) 1249, 1302, 1310, 1415, 1776, 1805
EciI GGCGGA 1 cut(s) 1688
Ecl136II GAGCTC 2 cut(s) 1678, 1769
Eco130I CCWWGG 4 cut(s) 8, 432, 1545, 2198
Eco24I GRGCYC 2 cut(s) 1680, 1771
Eco32I GATATC 1 cut(s) 370
Eco47I GGWCC 2 cut(s) 429, 1534
Eco53kI GAGCTC 2 cut(s) 1678, 1769
Eco57I CTGAAG 3 cut(s) 1476, 1757, 1786
Eco88I CYCGRG 1 cut(s) 2242
EcoICRI GAGCTC 2 cut(s) 1678, 1769
EcoNI CCTNNNNNAGG 1 cut(s) 2202
EcoRII CCWGG 2 cut(s) 982, 2321
EcoRV GATATC 1 cut(s) 370
EcoT14I CCWWGG 4 cut(s) 8, 432, 1545, 2198
EcoT22I ATGCAT 1 cut(s) 65
EcoT38I GRGCYC 2 cut(s) 1680, 1771
EgeI GGCGCC 1 cut(s) 1971
EheI GGCGCC 1 cut(s) 1971
ErhI CCWWGG 4 cut(s) 8, 432, 1545, 2198
FalI AAGNNNNNCTT 2 cut(s) 614, 646
FaqI GGGAC 3 cut(s) 227, 1276, 1547
FauI CCCGC 2 cut(s) 301, 1161
FauNDI CATATG 1 cut(s) 1351
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 9 cut(s) 297, 728, 770, 810, 1230, 1233, 1356, 1434, 1779
FokI GGATG 6 cut(s) 674, 952, 966, 1347, 1803, 2150
FriOI GRGCYC 2 cut(s) 1680, 1771
Fsp4HI GCNGC 9 cut(s) 297, 728, 770, 810, 1230, 1233, 1356, 1434, 1779
FspBI CTAG 4 cut(s) 699, 710, 756, 1956
GlaI GCGC 2 cut(s) 515, 1971
GluI GCNGC 9 cut(s) 297, 728, 770, 810, 1230, 1233, 1356, 1434, 1779
GsuI CTGGAG 2 cut(s) 821, 2295
HaeII RGCGCY 2 cut(s) 517, 1973
HaeIII GGCC 4 cut(s) 1147, 1411, 2049, 2256
HapII CCGG 3 cut(s) 659, 1364, 2367
HhaI GCGC 2 cut(s) 516, 1972
Hin1I GRCGYC 1 cut(s) 1970
Hin6I GCGC 2 cut(s) 514, 1970
HinP1I GCGC 2 cut(s) 514, 1970
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HindIII AAGCTT 1 cut(s) 2234
HinfI GANTC 8 cut(s) 82, 886, 1187, 1264, 1614, 1718, 2100, 2375
HpaII CCGG 3 cut(s) 659, 1364, 2367
HphI GGTGA 5 cut(s) 277, 1534, 1609, 1612, 2183
Hpy166II GTNNAC 3 cut(s) 379, 561, 903
Hpy8I GTNNAC 3 cut(s) 379, 561, 903
HpyAV CCTTC 2 cut(s) 1387, 1500
HpyCH4III ACNGT 4 cut(s) 94, 1179, 1592, 1709
HpyCH4IV ACGT 2 cut(s) 557, 703
HpyCH4V TGCA 9 cut(s) 63, 290, 727, 809, 966, 1349, 1433, 1628, 1888
HpyF10VI GCNNNNNNNGC 8 cut(s) 227, 296, 406, 766, 1127, 1355, 1775, 2233
HpyF3I CTNAG 7 cut(s) 413, 456, 1013, 1821, 2112, 2237, 2400
HpySE526I ACGT 2 cut(s) 557, 703
Hsp92I GRCGYC 1 cut(s) 1970
HspAI GCGC 2 cut(s) 514, 1970
KasI GGCGCC 1 cut(s) 1969
Kpn2I TCCGGA 1 cut(s) 658
KpnI GGTACC 1 cut(s) 1791
Ksp22I TGATCA 1 cut(s) 136
KspI CCGCGG 1 cut(s) 297
LguI GCTCTTC 1 cut(s) 1776
LmnI GCTCC 7 cut(s) 22, 646, 802, 854, 1675, 1766, 2390
Lsp1109I GCAGC 6 cut(s) 739, 821, 1244, 1342, 1445, 1790
LweI GCATC 5 cut(s) 258, 418, 682, 714, 997
MaeI CTAG 4 cut(s) 699, 710, 756, 1956
MaeII ACGT 2 cut(s) 557, 703
MaeIII GTNAC 4 cut(s) 88, 195, 237, 2065
MfeI CAATTG 1 cut(s) 761
MflI RGATCY 4 cut(s) 201, 307, 1738, 2152
MhlI GDGCHC 4 cut(s) 19, 643, 1680, 1771
MlsI TGGCCA 1 cut(s) 1411
MluNI TGGCCA 1 cut(s) 1411
Mly113I GGCGCC 1 cut(s) 1970
MlyI GAGTC 4 cut(s) 895, 1258, 1608, 2094
MmeI TCCRAC 1 cut(s) 1997
Mox20I TGGCCA 1 cut(s) 1411
Mph1103I ATGCAT 1 cut(s) 65
MroI TCCGGA 1 cut(s) 658
MroXI GAANNNNTTC 1 cut(s) 2368
MscI TGGCCA 1 cut(s) 1411
MseI TTAA 7 cut(s) 33, 576, 918, 947, 1275, 2057, 2082
MslI CAYNNNNRTG 3 cut(s) 1376, 1544, 1964
Msp20I TGGCCA 1 cut(s) 1411
MspA1I CMGCKG 2 cut(s) 296, 812
MspI CCGG 3 cut(s) 659, 1364, 2367
MspR9I CCNGG 3 cut(s) 984, 1365, 2323
MunI CAATTG 1 cut(s) 761
MvaI CCWGG 2 cut(s) 984, 2323
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 8 cut(s) 227, 296, 406, 766, 1127, 1355, 1775, 2233
NarI GGCGCC 1 cut(s) 1970
NciI CCSGG 1 cut(s) 1365
NcoI CCATGG 2 cut(s) 8, 1545
NdeI CATATG 1 cut(s) 1351
NlaIV GGNNCC 9 cut(s) 49, 151, 203, 856, 1535, 1740, 1789, 1971, 2365
NmuCI GTSAC 2 cut(s) 88, 237
NsiI ATGCAT 1 cut(s) 65
NspI RCATGY 1 cut(s) 404
NspV TTCGAA 1 cut(s) 1220
PaeI GCATGC 1 cut(s) 404
PagI TCATGA 2 cut(s) 312, 793
PaqCI CACCTGC 1 cut(s) 2384
PciSI GCTCTTC 1 cut(s) 1776
PcsI WCGNNNNNNNCGW 1 cut(s) 1741
PdmI GAANNNNTTC 1 cut(s) 2368
PfeI GAWTC 4 cut(s) 82, 1187, 1718, 2375
PflFI GACNNNGTC 1 cut(s) 705
PfoI TCCNGGA 1 cut(s) 982
PinAI ACCGGT 1 cut(s) 2366
PkrI GCNGC 9 cut(s) 298, 729, 771, 811, 1231, 1234, 1357, 1435, 1780
PleI GAGTC 4 cut(s) 894, 1258, 1608, 2094
PluTI GGCGCC 1 cut(s) 1973
PpsI GAGTC 4 cut(s) 894, 1258, 1608, 2094
PshBI ATTAAT 1 cut(s) 2057
Psp124BI GAGCTC 2 cut(s) 1680, 1771
Psp1406I AACGTT 1 cut(s) 557
Psp6I CCWGG 2 cut(s) 982, 2321
PspGI CCWGG 2 cut(s) 982, 2321
PspN4I GGNNCC 9 cut(s) 49, 151, 203, 856, 1535, 1740, 1789, 1971, 2365
PspPI GGNCC 4 cut(s) 429, 1534, 2048, 2255
PsuI RGATCY 4 cut(s) 201, 307, 1738, 2152
PsyI GACNNNGTC 1 cut(s) 705
RsaI GTAC 2 cut(s) 1573, 1789
RsaNI GTAC 2 cut(s) 1572, 1788
RseI CAYNNNNRTG 3 cut(s) 1376, 1544, 1964
SacI GAGCTC 2 cut(s) 1680, 1771
SacII CCGCGG 1 cut(s) 297
SapI GCTCTTC 1 cut(s) 1776
SaqAI TTAA 7 cut(s) 33, 576, 918, 947, 1275, 2057, 2082
SatI GCNGC 9 cut(s) 297, 728, 770, 810, 1230, 1233, 1356, 1434, 1779
Sau96I GGNCC 4 cut(s) 429, 1534, 2048, 2255
SchI GAGTC 4 cut(s) 895, 1258, 1608, 2094
ScrFI CCNGG 3 cut(s) 984, 1365, 2323
SduI GDGCHC 4 cut(s) 19, 643, 1680, 1771
SfaNI GCATC 5 cut(s) 258, 418, 682, 714, 997
SfcI CTRYAG 1 cut(s) 1086
SfoI GGCGCC 1 cut(s) 1971
Sfr303I CCGCGG 1 cut(s) 297
SfuI TTCGAA 1 cut(s) 1220
SgrBI CCGCGG 1 cut(s) 297
SinI GGWCC 2 cut(s) 429, 1534
SmiMI CAYNNNNRTG 3 cut(s) 1376, 1544, 1964
SmlI CTYRAG 4 cut(s) 382, 827, 1502, 2102
SmoI CTYRAG 4 cut(s) 382, 827, 1502, 2102
SphI GCATGC 1 cut(s) 404
SspDI GGCGCC 1 cut(s) 1969
SspI AATATT 1 cut(s) 423
SspMI CTAG 4 cut(s) 699, 710, 756, 1956
SstI GAGCTC 2 cut(s) 1680, 1771
StyD4I CCNGG 3 cut(s) 982, 1363, 2321
StyI CCWWGG 4 cut(s) 8, 432, 1545, 2198
TaaI ACNGT 4 cut(s) 94, 1179, 1592, 1709
TaiI ACGT 2 cut(s) 560, 706
TaqI TCGA 8 cut(s) 123, 736, 1018, 1201, 1220, 1744, 2296, 2380
TaqII GACCGA 2 cut(s) 225, 2398
TauI GCSGC 3 cut(s) 299, 772, 1232
TfiI GAWTC 4 cut(s) 82, 1187, 1718, 2375
Tru1I TTAA 7 cut(s) 33, 576, 918, 947, 1275, 2057, 2082
Tru9I TTAA 7 cut(s) 33, 576, 918, 947, 1275, 2057, 2082
TscAI CASTG 9 cut(s) 27, 99, 602, 958, 1110, 1527, 1647, 1813, 2003
TseFI GTSAC 2 cut(s) 88, 237
TseI GCWGC 6 cut(s) 727, 809, 1232, 1355, 1433, 1778
Tsp45I GTSAC 2 cut(s) 88, 237
TspGWI ACGGA 3 cut(s) 99, 214, 2132
TspRI CASTG 9 cut(s) 27, 99, 602, 958, 1110, 1527, 1647, 1813, 2003
Tth111I GACNNNGTC 1 cut(s) 705
VpaK11BI GGWCC 2 cut(s) 429, 1534
VspI ATTAAT 1 cut(s) 2057
XagI CCTNNNNNAGG 1 cut(s) 2202
XapI RAATTY 4 cut(s) 257, 1757, 1928, 2159
XbaI TCTAGA 1 cut(s) 698
XceI RCATGY 1 cut(s) 404
XcmI CCANNNNNNNNNTGG 1 cut(s) 1527
XmnI GAANNNNTTC 1 cut(s) 2368
XspI CTAG 4 cut(s) 699, 710, 756, 1956
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.