RchiOBHm_Chr7g0221891
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000094
Physical Location & Seq
Forward (+)
42993007 .. 42996404
3398 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19855

Sequence Viewer

Length: 3075 bp
ATGCTAGGGTGTTTGCTATTGGTCAGCAGAATGCCGGAGTGGAAGCTTGATATGTTTTGTGATGCTTGCCCAATTGTGATTGGTGGTAAGGAGTTTACCGCGGCCTTGATTGTATTAGCAGATCATAAGTATGATGTCATTTTGGGTATTGATTGGCTGAGGCCAAATCATGCTATGATTGATTGCTTTGAAATGGTAGTATCATTTCATATACCTGGGCAGCCGGTGTTTCGTTATCGGTGTCTTAGGTCAGATACTGCTTTGAGGGCAGGATTCTTAGCTCATGTGGAGACGGTGAGTTGTACTGCGGTTATGGCAGAGATTGCCGTGGTTTCCGAGTACAGTGATGTATTTCAGGAAATACCAGGATTACCTCCAATAAGGGAAGTGGACTTTGCTATCGATGTGATACCAGGTACTGCACCTGTATCCATGGCACCTTTTCGGATGGCACCAACTGAACTTAAAGAGTTGAAGGAGCAAATTGATGGTTTACTTGAGCAAGGGTTCATTAGACCTAGTACTTCTCCTTGGGGTGCACCTGTGGTGTTTGCAAAGAAGAAGGATGGTTCACTAAGGTTGTGTGTGGATTATCGGCAGTTGAACAAGGTGACGATTAAGAATAGGTACCCTTTACCTAGGATTGATGACTTGTTCGACCAGCTCAAGGAAGCTGCTGTATTTTCGAAGATCGATTTGAGATCCGGATATCACCAGTTGAGGGTGAAAGATGATGATGTTCCTAAGACTGCTTTTAGGACTAGGTATGGACATTTTGAGTTTGTTGTCATGCCTTTTGGTTTAACCAATGCACCTGCAGCCTTTATGGACTTGATGAACCGTATGTTCAGTCCGTACTTGGATAAGTTCGTGGTGGTGTTCGTGGATGATATCTTGATTTATTCCAAGACGCTGGAGGATCATGATAAGCATCTGCGGATTGTGCTACAACTTTTGAGAGAAGAGAAGTTGTTTGCGAAATTCGAGAAGTGCGAATTTTGGCAAAGGGAGATCAAGTTTCTTGGTCATGTAGTTTCGAAGGATGGAGTCTCCGTGGATCCTTCTAAAGTTGAGGCAGTGATGAACTGGGGCCAACCCACTACTGTTACTGAGGTACGTAGTTTTCTGGGTTTGGCAGGTTATTATCGGAGATTCATTGAGGGATTTTCTAGCATTGCTTCGGCTTTGACCAAGTTGACCAGGAAGAATGTCCAGTTTGTGTGGACTGAGGAATGTGAACGAGCATTCAATGAGTTGAAGGCTAGATTGACCACAGCCCCAGTGTTGACTATTCCCACAAGCGGTGGCGGTTTAGTCATCTATAGTGATGCGTCTCATCAGGGTTTGGGATGTGTGTTGATGCAGCATGGCGGTGTTGTCGCTTATGGTTCTAGACAGTTGAAGGTGCATGAGCGTAATTACCCCACTCATGATTTGGAGTTGGCTGCAGTTGTGTTTGCCTTGAAGATTTGGAGGCATTACTTGTATGGGGAGAAGTTCGAACTCTTTTCGGATCATAAGAGTTTGAAGTATCTGTTCTCTCAGAAGGAGTTGAACATGAGACAGAGAAGGTGGATGGAGCTCATGAAGGACTATGATTTCACCTTGGAGTATCATCCAGGAAAGGCCAATGTTGTGGCGGATGCTTTGAGTAGGAAGCCCAGAGGTATTGTTGCTTCTATTATGGTTCAGGAGTGGCTTATGTTGGAAACTGCATCTGAGTTTGACCTTGTACAAGCAAGAGTTGAGAATGGAAGTTTCCTTGGAAGTATCACGGTACAGCCTACTTTGATTTCCAGGATCATTCAAGGTCAGACAGGGGATGAGTTCTCTCGTGCGAAGTTGGCAGAGTTGGCTGCGGATTCGTCAATCGGCGTTCCATCAGAGTGGTCGGTGGGAACAGATGGTGGTTTACGGATGAACCATAGGTTGTATGTTCCGGATCGTGTTGATCTCAAGGGAGAGATTCTTCGTGAGGGACATCGATCGCGGTATACTGTACACCCTGGAAGCACTAAGATGTATCGGGATTTGCGAAGGCAATTCTGGTGGAATAGAATGAAAAGGGATGTGGCAGAGTATGTCTCCAAGTGTCTTACTTGCCAACGGGTGAAGGCTGAGCATCAGAGACCTGCAGGTATGTTAAAGCCGTTACCTATTCCCGTATGGAAGTGGGAGCAGATCTCAATGGATTTTGTCACTGGACTGCCTAGGTCCAAACGAAGTCACGATGCAGTGTGGGTGATCGTGGATCGTTTGACGAAATCAGCGCACTTTCTTCCGGTGTCAATGACGTATTCGGTTGACATGTTGTGCGAGCTTTACATCGAGGTGTTGGAGGATATGTTGAGAGCCTGTGTGTTGGACTTCAAGGGAAGCTGGGAGGATCATCTGCCGTTGATTGAATTCTCCTACAACAACAGTTATCACTCCAGTATTGGCATGGCACCATATGAGGCCCTGTATGGTAGGCCATGTAGATCTCCGATCTGCTGGGCAGAGGCAGGAGATAAGGTGTTATTGGGTCCTGAGATTGTCCAGGAGACCTCTGATAAGATTTCGGTTATCAGGGACAGGATTCGAACAGCACAGAGTAGACAGAAGAGTTATGCAGATTTGAAAAGGAGACAAGTTGAGTTTAAAGAGGGTGATCATGTGTTCTTGAAGGTCTCACCCATGAAGGGTGTGGTGAGATTTGGCAAGAAAGGGAAGTTATCGCCAAGGTTTGTCGGACCTTTTGAAATTCTGGAAAGGGTAGGAGATTTGGCTTATAGGCTTGCCTTGCCTCCTACTATGTCTGGCGTGCATAATGTTTTCCATGTGTCTATGTTGAGGAAGTATGTTCAGGATGAGTCACATGTGATTGATTATGGTACGATTGAGGTGCATGCGGATACGACCTTTGTTGTTGAACCTGTTCGTATTCTGGATAGGTCAACAAAGCAACTTCGAAGGAAGGAAGTTGACTTGGTCAAGGTATTGTGGAGTCACCATGACGAGGGTGATGCTTCTTGGGAGTTGGAGTCAGATATGAGAGCGAAGTACCCACAGTTGTTTGTTGATGAGCAAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

1024

Amino Acids

117.24

Weight (kDa)

8.0

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 17 - 69 3.4e-12 Retroviral aspartyl protease
RVT_1 PF00078 186 - 344 3.8e-39 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 408 - 501 2e-29 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 439 - 532 6.1e-32 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 651 - 706 2.8e-18 Integrase zinc binding domain
SH3_Tf2-1 PF24626 883 - 948 3.2e-28 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 823
Acc36I ACCTGC 4 cut(s) 823, 1127, 2126, 2140
Acc65I GGTACC 1 cut(s) 627
AccB1I GGYRCC 4 cut(s) 436, 451, 627, 2446
AccI GTMKAC 2 cut(s) 1994, 2596
AccII CGCG 2 cut(s) 101, 1990
AccIII TCCGGA 2 cut(s) 704, 1939
AclWI GGATC 9 cut(s) 696, 927, 1052, 1065, 1521, 1808, 1950, 2259, 2394
AcsI RAATTY 4 cut(s) 980, 995, 2405, 2742
AfiI CCNNNNNNNGG 5 cut(s) 667, 721, 1301, 2681, 2998
AflIII ACRYGT 2 cut(s) 2307, 2857
AjnI CCWGG 8 cut(s) 214, 364, 412, 1199, 1618, 1796, 2005, 2538
AluBI AGCT 7 cut(s) 46, 281, 664, 674, 1582, 2320, 2379
AluI AGCT 7 cut(s) 46, 281, 664, 674, 1582, 2320, 2379
Alw21I GWGCWC 2 cut(s) 541, 1584
Alw26I GTCTC 9 cut(s) 284, 1054, 1338, 1555, 2089, 2122, 2537, 2620, 2674
Alw44I GTGCAC 1 cut(s) 537
AlwI GGATC 9 cut(s) 696, 927, 1052, 1065, 1521, 1808, 1950, 2259, 2394
AlwNI CAGNNNCTG 2 cut(s) 257, 419
Aor13HI TCCGGA 2 cut(s) 704, 1939
AoxI GGCC 6 cut(s) 102, 161, 1090, 1626, 2457, 2471
ApaLI GTGCAC 1 cut(s) 537
ApeKI GCWGC 6 cut(s) 220, 674, 818, 1363, 1445, 1856
ApoI RAATTY 4 cut(s) 980, 995, 2405, 2742
Asp700I GAANNNNTTC 1 cut(s) 2916
Asp718I GGTACC 1 cut(s) 627
AspA2I CCTAGG 2 cut(s) 638, 2210
AspLEI GCGC 1 cut(s) 2272
AspS9I GGNCC 5 cut(s) 1090, 2214, 2458, 2525, 2732
AsuII TTCGAA 5 cut(s) 686, 1037, 1500, 2581, 2950
AvaII GGWCC 3 cut(s) 2214, 2525, 2732
AvrII CCTAGG 2 cut(s) 638, 2210
BaeGI GKGCMC 1 cut(s) 541
BamHI GGATCC 1 cut(s) 1057
BanI GGYRCC 4 cut(s) 436, 451, 627, 2446
BanII GRGCYC 1 cut(s) 1584
BarI GAAGNNNNNNTAC 2 cut(s) 1660, 1692
BauI CACGAG 1 cut(s) 1833
Bbv12I GWGCWC 2 cut(s) 541, 1584
BbvCI CCTCAGC 1 cut(s) 158
BbvI GCAGC 6 cut(s) 232, 661, 830, 1375, 1432, 1843
BccI CCATC 7 cut(s) 442, 482, 560, 1037, 1570, 1888, 1898
BceAI ACGGC 3 cut(s) 311, 2134, 2380
BcgI CGANNNNNNTGC 4 cut(s) 2866, 2900, 2987, 3021
BciT130I CCWGG 8 cut(s) 216, 366, 414, 1201, 1620, 1798, 2007, 2540
BciVI GTATCC 2 cut(s) 439, 2887
BclI TGATCA 1 cut(s) 2650
BcoDI GTCTC 9 cut(s) 284, 1054, 1338, 1555, 2089, 2122, 2537, 2620, 2674
BfaI CTAG 8 cut(s) 5, 519, 639, 762, 1170, 1263, 1392, 2211
BfmI CTRYAG 4 cut(s) 816, 1321, 1446, 2133
BfuAI ACCTGC 4 cut(s) 823, 1127, 2126, 2140
BfuI GTATCC 2 cut(s) 439, 2887
BglII AGATCT 2 cut(s) 2181, 2480
BisI GCNGC 7 cut(s) 102, 221, 675, 819, 1364, 1446, 1857
BlnI CCTAGG 2 cut(s) 638, 2210
BlpI GCTNAGC 1 cut(s) 2118
BlsI GCNGC 7 cut(s) 103, 222, 676, 820, 1365, 1447, 1858
BmcAI AGTACT 1 cut(s) 523
Bme1390I CCNGG 8 cut(s) 216, 366, 414, 1201, 1620, 1798, 2007, 2540
Bme18I GGWCC 3 cut(s) 2214, 2525, 2732
BmgT120I GGNCC 5 cut(s) 1090, 2214, 2458, 2525, 2732
BmiI GGNNCC 7 cut(s) 438, 453, 629, 1059, 1091, 2448, 2526
BmrFI CCNGG 8 cut(s) 216, 366, 414, 1201, 1620, 1798, 2007, 2540
BmrI ACTGGG 2 cut(s) 1096, 1274
BmsI GCATC 9 cut(s) 52, 940, 1318, 1350, 1633, 1724, 2131, 2221, 2995
BmuI ACTGGG 2 cut(s) 1096, 1274
BplI GAGNNNNNCTC 4 cut(s) 2069, 2101, 2168, 2200
BpmI CTGGAG 2 cut(s) 935, 2416
Bpu10I CCTNAGC 1 cut(s) 158
Bpu1102I GCTNAGC 1 cut(s) 2118
Bpu14I TTCGAA 5 cut(s) 686, 1037, 1500, 2581, 2950
BpuEI CTTGAG 3 cut(s) 518, 650, 1940
Bsa29I ATCGAT 3 cut(s) 402, 693, 1984
BsaAI YACGTR 1 cut(s) 1118
BsaBI GATNNNNATC 1 cut(s) 930
BsaI GGTCTC 3 cut(s) 2122, 2537, 2674
BsaWI WCCGGW 3 cut(s) 704, 1939, 2281
Bsc4I CCNNNNNNNGG 5 cut(s) 667, 721, 1301, 2681, 2998
Bse118I RCCGGY 1 cut(s) 223
Bse1I ACTGG 6 cut(s) 715, 1091, 1213, 1280, 2206, 2433
Bse3DI GCAATG 1 cut(s) 1173
Bse8I GATNNNNATC 1 cut(s) 930
BseAI TCCGGA 2 cut(s) 704, 1939
BseBI CCWGG 8 cut(s) 216, 366, 414, 1201, 1620, 1798, 2007, 2540
BseCI ATCGAT 3 cut(s) 402, 693, 1984
BseJI GATNNNNATC 1 cut(s) 930
BseLI CCNNNNNNNGG 5 cut(s) 667, 721, 1301, 2681, 2998
BseMI GCAATG 1 cut(s) 1173
BseMII CTCAG 7 cut(s) 149, 1101, 1218, 1556, 1710, 2109, 2520
BseNI ACTGG 6 cut(s) 715, 1091, 1213, 1280, 2206, 2433
BseSI GKGCMC 1 cut(s) 541
BseXI GCAGC 6 cut(s) 232, 661, 830, 1375, 1432, 1843
BseYI CCCAGC 2 cut(s) 2379, 2493
BsgI GTGCAG 1 cut(s) 405
Bsh1236I CGCG 2 cut(s) 101, 1990
Bsh1285I CGRYCG 1 cut(s) 1988
BshFI GGCC 6 cut(s) 104, 163, 1092, 1628, 2459, 2473
BshNI GGYRCC 4 cut(s) 436, 451, 627, 2446
BshVI ATCGAT 3 cut(s) 402, 693, 1984
BsiEI CGRYCG 1 cut(s) 1988
BsiHKAI GWGCWC 2 cut(s) 541, 1584
BsiSI CCGG 5 cut(s) 35, 224, 705, 1940, 2282
BslFI GGGAC 2 cut(s) 1992, 2585
BslI CCNNNNNNNGG 5 cut(s) 667, 721, 1301, 2681, 2998
BsmAI GTCTC 9 cut(s) 284, 1054, 1338, 1555, 2089, 2122, 2537, 2620, 2674
BsmBI CGTCTC 2 cut(s) 284, 1338
BsmFI GGGAC 2 cut(s) 1992, 2585
BsmI GAATGC 2 cut(s) 36, 1244
BsnI GGCC 6 cut(s) 104, 163, 1092, 1628, 2459, 2473
Bso31I GGTCTC 3 cut(s) 2122, 2537, 2674
Bsp119I TTCGAA 5 cut(s) 686, 1037, 1500, 2581, 2950
Bsp1286I GDGCHC 2 cut(s) 541, 1584
Bsp13I TCCGGA 2 cut(s) 704, 1939
Bsp1407I TGTACA 2 cut(s) 1732, 1999
Bsp1720I GCTNAGC 1 cut(s) 2118
Bsp19I CCATGG 1 cut(s) 432
BspANI GGCC 6 cut(s) 104, 163, 1092, 1628, 2459, 2473
BspCNI CTCAG 7 cut(s) 150, 1102, 1219, 1555, 1711, 2110, 2521
BspDI ATCGAT 3 cut(s) 402, 693, 1984
BspEI TCCGGA 2 cut(s) 704, 1939
BspFNI CGCG 2 cut(s) 101, 1990
BspHI TCATGA 3 cut(s) 922, 1429, 1584
BspLI GGNNCC 7 cut(s) 438, 453, 629, 1059, 1091, 2448, 2526
BspMAI CTGCAG 3 cut(s) 820, 1450, 2137
BspMI ACCTGC 4 cut(s) 823, 1127, 2126, 2140
BspPI GGATC 9 cut(s) 696, 927, 1052, 1065, 1521, 1808, 1950, 2259, 2394
BspT104I TTCGAA 5 cut(s) 686, 1037, 1500, 2581, 2950
BspT107I GGYRCC 4 cut(s) 436, 451, 627, 2446
BspTNI GGTCTC 3 cut(s) 2122, 2537, 2674
BsrDI GCAATG 1 cut(s) 1173
BsrFI RCCGGY 1 cut(s) 223
BsrGI TGTACA 2 cut(s) 1732, 1999
BsrI ACTGG 6 cut(s) 715, 1091, 1213, 1280, 2206, 2433
BssAI RCCGGY 1 cut(s) 223
BssNAI GTATAC 1 cut(s) 1995
BssSI CACGAG 1 cut(s) 1833
BssT1I CCWWGG 7 cut(s) 432, 530, 638, 1605, 1762, 2210, 2720
Bst1107I GTATAC 1 cut(s) 1995
Bst2BI CACGAG 1 cut(s) 1833
Bst2UI CCWGG 8 cut(s) 216, 366, 414, 1201, 1620, 1798, 2007, 2540
Bst4CI ACNGT 9 cut(s) 295, 344, 842, 1105, 1398, 1777, 1999, 2423, 3051
Bst6I CTCTTC 2 cut(s) 957, 2597
BstAPI GCANNNNNTGC 1 cut(s) 323
BstAUI TGTACA 2 cut(s) 1732, 1999
BstBAI YACGTR 1 cut(s) 1118
BstBI TTCGAA 5 cut(s) 686, 1037, 1500, 2581, 2950
BstC8I GCNNGC 6 cut(s) 67, 2318, 2778, 2804, 2889, 3069
BstDSI CCRYGG 4 cut(s) 99, 327, 432, 1053
BstFNI CGCG 2 cut(s) 101, 1990
BstHHI GCGC 1 cut(s) 2272
BstMAI GTCTC 9 cut(s) 284, 1054, 1338, 1555, 2089, 2122, 2537, 2620, 2674
BstMCI CGRYCG 1 cut(s) 1988
BstMWI GCNNNNNNNGC 8 cut(s) 266, 314, 323, 818, 943, 1844, 1853, 2782
BstNI CCWGG 8 cut(s) 216, 366, 414, 1201, 1620, 1798, 2007, 2540
BstNSI RCATGY 3 cut(s) 2311, 2861, 2891
BstSCI CCNGG 8 cut(s) 214, 364, 412, 1199, 1618, 1796, 2005, 2538
BstSFI CTRYAG 4 cut(s) 816, 1321, 1446, 2133
BstSLI GKGCMC 1 cut(s) 541
BstSNI TACGTA 1 cut(s) 1118
BstUI CGCG 2 cut(s) 101, 1990
BstV1I GCAGC 6 cut(s) 232, 661, 830, 1375, 1432, 1843
BstX2I RGATCY 4 cut(s) 701, 1057, 2181, 2480
BstXI CCANNNNNNTGG 3 cut(s) 913, 1636, 1887
BstYI RGATCY 4 cut(s) 701, 1057, 2181, 2480
BstZ17I GTATAC 1 cut(s) 1995
Bsu15I ATCGAT 3 cut(s) 402, 693, 1984
BsuI GTATCC 2 cut(s) 439, 2887
BsuRI GGCC 6 cut(s) 104, 163, 1092, 1628, 2459, 2473
BsuTUI ATCGAT 3 cut(s) 402, 693, 1984
BtgI CCRYGG 4 cut(s) 99, 327, 432, 1053
BtsI GCAGTG 2 cut(s) 1083, 2241
BtsIMutI CAGTG 5 cut(s) 349, 1083, 1287, 2199, 2241
BveI ACCTGC 4 cut(s) 823, 1127, 2126, 2140
Cac8I GCNNGC 6 cut(s) 67, 2318, 2778, 2804, 2889, 3069
CaiI CAGNNNCTG 2 cut(s) 257, 419
CciI TCATGA 3 cut(s) 922, 1429, 1584
CfoI GCGC 1 cut(s) 2272
Cfr10I RCCGGY 1 cut(s) 223
Cfr13I GGNCC 5 cut(s) 1090, 2214, 2458, 2525, 2732
Cfr42I CCGCGG 1 cut(s) 102
ClaI ATCGAT 3 cut(s) 402, 693, 1984
CseI GACGC 2 cut(s) 919, 1320
CsiI ACCWGGT 1 cut(s) 412
CspCI CAANNNNNGTGG 2 cut(s) 2030, 2065
DraI TTTAAA 1 cut(s) 2641
Eam1104I CTCTTC 2 cut(s) 957, 2597
EarI CTCTTC 2 cut(s) 957, 2597
EciI GGCGGA 1 cut(s) 1655
Ecl136II GAGCTC 1 cut(s) 1582
Eco105I TACGTA 1 cut(s) 1118
Eco130I CCWWGG 7 cut(s) 432, 530, 638, 1605, 1762, 2210, 2720
Eco24I GRGCYC 1 cut(s) 1584
Eco31I GGTCTC 3 cut(s) 2122, 2537, 2674
Eco32I GATATC 2 cut(s) 710, 892
Eco47I GGWCC 3 cut(s) 2214, 2525, 2732
Eco53kI GAGCTC 1 cut(s) 1582
EcoICRI GAGCTC 1 cut(s) 1582
EcoO109I RGGNCCY 2 cut(s) 2458, 2525
EcoRI GAATTC 1 cut(s) 2405
EcoRII CCWGG 8 cut(s) 214, 364, 412, 1199, 1618, 1796, 2005, 2538
EcoRV GATATC 2 cut(s) 710, 892
EcoT14I CCWWGG 7 cut(s) 432, 530, 638, 1605, 1762, 2210, 2720
EcoT38I GRGCYC 1 cut(s) 1584
ErhI CCWWGG 7 cut(s) 432, 530, 638, 1605, 1762, 2210, 2720
Esp3I CGTCTC 2 cut(s) 284, 1338
FaqI GGGAC 2 cut(s) 1992, 2585
FauNDI CATATG 1 cut(s) 2452
FbaI TGATCA 1 cut(s) 2650
FblI GTMKAC 2 cut(s) 1994, 2596
Fnu4HI GCNGC 7 cut(s) 102, 221, 675, 819, 1364, 1446, 1857
FriOI GRGCYC 1 cut(s) 1584
Fsp4HI GCNGC 7 cut(s) 102, 221, 675, 819, 1364, 1446, 1857
FspBI CTAG 8 cut(s) 5, 519, 639, 762, 1170, 1263, 1392, 2211
GlaI GCGC 1 cut(s) 2271
GluI GCNGC 7 cut(s) 102, 221, 675, 819, 1364, 1446, 1857
GsaI CCCAGC 2 cut(s) 2383, 2497
GsuI CTGGAG 2 cut(s) 935, 2416
HaeIII GGCC 6 cut(s) 104, 163, 1092, 1628, 2459, 2473
HapII CCGG 5 cut(s) 35, 224, 705, 1940, 2282
HgaI GACGC 2 cut(s) 919, 1320
HhaI GCGC 1 cut(s) 2272
Hin6I GCGC 1 cut(s) 2270
HinP1I GCGC 1 cut(s) 2270
HincII GTYRAC 5 cut(s) 1197, 1287, 2305, 2937, 2965
HindII GTYRAC 5 cut(s) 1197, 1287, 2305, 2937, 2965
HindIII AAGCTT 1 cut(s) 44
HinfI GANTC 9 cut(s) 273, 1047, 1152, 1862, 1966, 2578, 2852, 2986, 3023
HpaII CCGG 5 cut(s) 35, 224, 705, 1940, 2282
HpyCH4III ACNGT 9 cut(s) 295, 344, 842, 1105, 1398, 1777, 1999, 2423, 3051
HpyCH4IV ACGT 2 cut(s) 1117, 2294
HpyF10VI GCNNNNNNNGC 8 cut(s) 266, 314, 323, 818, 943, 1844, 1853, 2782
HpySE526I ACGT 2 cut(s) 1117, 2294
HspAI GCGC 1 cut(s) 2270
Kpn2I TCCGGA 2 cut(s) 704, 1939
KpnI GGTACC 1 cut(s) 631
Ksp22I TGATCA 1 cut(s) 2650
KspI CCGCGG 1 cut(s) 102
LmnI GCTCC 3 cut(s) 478, 1579, 2176
Lsp1109I GCAGC 6 cut(s) 232, 661, 830, 1375, 1432, 1843
LweI GCATC 9 cut(s) 52, 940, 1318, 1350, 1633, 1724, 2131, 2221, 2995
MabI ACCWGGT 1 cut(s) 412
MaeI CTAG 8 cut(s) 5, 519, 639, 762, 1170, 1263, 1392, 2211
MaeII ACGT 2 cut(s) 1117, 2294
MaeIII GTNAC 7 cut(s) 610, 1105, 2151, 2197, 2225, 2853, 2987
MboII GAAGA 8 cut(s) 571, 700, 974, 1216, 1477, 1961, 2270, 2614
MfeI CAATTG 1 cut(s) 72
MflI RGATCY 4 cut(s) 701, 1057, 2181, 2480
MhlI GDGCHC 2 cut(s) 541, 1584
MluCI AATT 8 cut(s) 72, 483, 980, 995, 1417, 2042, 2405, 2742
MlyI GAGTC 4 cut(s) 1056, 2861, 2995, 3032
MmeI TCCRAC 5 cut(s) 1686, 2316, 2343, 2710, 3000
MroI TCCGGA 2 cut(s) 704, 1939
MroXI GAANNNNTTC 1 cut(s) 2916
MseI TTAA 5 cut(s) 465, 618, 803, 2144, 2640
MslI CAYNNNNRTG 5 cut(s) 129, 1371, 1885, 2018, 2330
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 5 cut(s) 35, 224, 705, 1940, 2282
MspR9I CCNGG 8 cut(s) 216, 366, 414, 1201, 1620, 1798, 2007, 2540
MunI CAATTG 1 cut(s) 72
Mva1269I GAATGC 2 cut(s) 36, 1244
MvaI CCWGG 8 cut(s) 216, 366, 414, 1201, 1620, 1798, 2007, 2540
MvnI CGCG 2 cut(s) 101, 1990
MwoI GCNNNNNNNGC 8 cut(s) 266, 314, 323, 818, 943, 1844, 1853, 2782
NcoI CCATGG 1 cut(s) 432
NdeI CATATG 1 cut(s) 2452
NlaIV GGNNCC 7 cut(s) 438, 453, 629, 1059, 1091, 2448, 2526
NmuCI GTSAC 5 cut(s) 610, 2197, 2225, 2853, 2987
NspI RCATGY 3 cut(s) 2311, 2861, 2891
NspV TTCGAA 5 cut(s) 686, 1037, 1500, 2581, 2950
PaeI GCATGC 1 cut(s) 2891
PagI TCATGA 3 cut(s) 922, 1429, 1584
PaqCI CACCTGC 1 cut(s) 823
PciI ACATGT 2 cut(s) 2307, 2857
PcsI WCGNNNNNNNCGW 2 cut(s) 990, 2032
PctI GAATGC 2 cut(s) 36, 1244
PdmI GAANNNNTTC 1 cut(s) 2916
PfeI GAWTC 5 cut(s) 273, 1152, 1862, 1966, 2578
PflFI GACNNNGTC 1 cut(s) 2969
PfoI TCCNGGA 3 cut(s) 1618, 1796, 2538
PkrI GCNGC 7 cut(s) 103, 222, 676, 820, 1365, 1447, 1858
Ple19I CGATCG 1 cut(s) 1988
PleI GAGTC 4 cut(s) 1055, 2860, 2994, 3031
PpsI GAGTC 4 cut(s) 1055, 2860, 2994, 3031
Ppu21I YACGTR 1 cut(s) 1118
PpuMI RGGWCCY 1 cut(s) 2525
PscI ACATGT 2 cut(s) 2307, 2857
Psp124BI GAGCTC 1 cut(s) 1584
Psp5II RGGWCCY 1 cut(s) 2525
Psp6I CCWGG 8 cut(s) 214, 364, 412, 1199, 1618, 1796, 2005, 2538
PspFI CCCAGC 2 cut(s) 2379, 2493
PspGI CCWGG 8 cut(s) 214, 364, 412, 1199, 1618, 1796, 2005, 2538
PspN4I GGNNCC 7 cut(s) 438, 453, 629, 1059, 1091, 2448, 2526
PspPI GGNCC 5 cut(s) 1090, 2214, 2458, 2525, 2732
PspPPI RGGWCCY 1 cut(s) 2525
PstI CTGCAG 3 cut(s) 820, 1450, 2137
PstNI CAGNNNCTG 2 cut(s) 257, 419
PsuI RGATCY 4 cut(s) 701, 1057, 2181, 2480
PsyI GACNNNGTC 1 cut(s) 2969
PvuI CGATCG 1 cut(s) 1988
RseI CAYNNNNRTG 5 cut(s) 129, 1371, 1885, 2018, 2330
SacI GAGCTC 1 cut(s) 1584
SacII CCGCGG 1 cut(s) 102
SaqAI TTAA 5 cut(s) 465, 618, 803, 2144, 2640
SatI GCNGC 7 cut(s) 102, 221, 675, 819, 1364, 1446, 1857
Sau96I GGNCC 5 cut(s) 1090, 2214, 2458, 2525, 2732
SbfI CCTGCAGG 1 cut(s) 2137
ScaI AGTACT 1 cut(s) 523
SchI GAGTC 4 cut(s) 1056, 2861, 2995, 3032
ScrFI CCNGG 8 cut(s) 216, 366, 414, 1201, 1620, 1798, 2007, 2540
SdaI CCTGCAGG 1 cut(s) 2137
SduI GDGCHC 2 cut(s) 541, 1584
SexAI ACCWGGT 1 cut(s) 412
SfaNI GCATC 9 cut(s) 52, 940, 1318, 1350, 1633, 1724, 2131, 2221, 2995
SfcI CTRYAG 4 cut(s) 816, 1321, 1446, 2133
Sfr303I CCGCGG 1 cut(s) 102
SfuI TTCGAA 5 cut(s) 686, 1037, 1500, 2581, 2950
SgrBI CCGCGG 1 cut(s) 102
SinI GGWCC 3 cut(s) 2214, 2525, 2732
SmiMI CAYNNNNRTG 5 cut(s) 129, 1371, 1885, 2018, 2330
SmlI CTYRAG 3 cut(s) 497, 665, 1955
SmoI CTYRAG 3 cut(s) 497, 665, 1955
SnaBI TACGTA 1 cut(s) 1118
SphI GCATGC 1 cut(s) 2891
Sse8387I CCTGCAGG 1 cut(s) 2137
Sse9I AATT 8 cut(s) 72, 483, 980, 995, 1417, 2042, 2405, 2742
SspMI CTAG 8 cut(s) 5, 519, 639, 762, 1170, 1263, 1392, 2211
SstI GAGCTC 1 cut(s) 1584
StyD4I CCNGG 8 cut(s) 214, 364, 412, 1199, 1618, 1796, 2005, 2538
StyI CCWWGG 7 cut(s) 432, 530, 638, 1605, 1762, 2210, 2720
TaaI ACNGT 9 cut(s) 295, 344, 842, 1105, 1398, 1777, 1999, 2423, 3051
TaiI ACGT 2 cut(s) 1120, 2297
TasI AATT 8 cut(s) 72, 483, 980, 995, 1417, 2042, 2405, 2742
TatI WGTACW 5 cut(s) 302, 339, 521, 1732, 1999
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 5 cut(s) 273, 1152, 1862, 1966, 2578
Tru1I TTAA 5 cut(s) 465, 618, 803, 2144, 2640
Tru9I TTAA 5 cut(s) 465, 618, 803, 2144, 2640
TscAI CASTG 5 cut(s) 349, 1083, 1287, 2206, 2241
TseFI GTSAC 5 cut(s) 610, 2197, 2225, 2853, 2987
TseI GCWGC 6 cut(s) 220, 674, 818, 1363, 1445, 1856
Tsp45I GTSAC 5 cut(s) 610, 2197, 2225, 2853, 2987
TspDTI ATGAA 9 cut(s) 197, 499, 851, 1097, 1144, 1601, 1934, 2075, 2693
TspGWI ACGGA 3 cut(s) 843, 1042, 1930
TspRI CASTG 5 cut(s) 349, 1083, 1287, 2206, 2241
Tth111I GACNNNGTC 1 cut(s) 2969
VneI GTGCAC 1 cut(s) 537
VpaK11BI GGWCC 3 cut(s) 2214, 2525, 2732
XapI RAATTY 4 cut(s) 980, 995, 2405, 2742
XbaI TCTAGA 1 cut(s) 1391
XceI RCATGY 3 cut(s) 2311, 2861, 2891
XcmI CCANNNNNNNNNTGG 3 cut(s) 1432, 2440, 2683
XmaJI CCTAGG 2 cut(s) 638, 2210
XmiI GTMKAC 2 cut(s) 1994, 2596
XmnI GAANNNNTTC 1 cut(s) 2916
XspI CTAG 8 cut(s) 5, 519, 639, 762, 1170, 1263, 1392, 2211
ZrmI AGTACT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.