transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 153 - 223 | 1.1e-11 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 355 |
| AciI | CCGC | 1 cut(s) | 544 |
| AclWI | GGATC | 1 cut(s) | 219 |
| AcsI | RAATTY | 2 cut(s) | 190, 222 |
| AcuI | CTGAAG | 1 cut(s) | 389 |
| AfaI | GTAC | 4 cut(s) | 49, 322, 384, 475 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 233, 571 |
| AflIII | ACRYGT | 1 cut(s) | 181 |
| AgsI | TTSAA | 1 cut(s) | 195 |
| AjnI | CCWGG | 3 cut(s) | 268, 316, 434 |
| AluBI | AGCT | 2 cut(s) | 131, 170 |
| AluI | AGCT | 2 cut(s) | 131, 170 |
| Alw21I | GWGCWC | 1 cut(s) | 445 |
| Alw44I | GTGCAC | 1 cut(s) | 441 |
| AlwI | GGATC | 1 cut(s) | 219 |
| ApaLI | GTGCAC | 1 cut(s) | 441 |
| ApoI | RAATTY | 2 cut(s) | 190, 222 |
| AsuC2I | CCSGG | 2 cut(s) | 69, 281 |
| AsuHPI | GGTGA | 5 cut(s) | 76, 107, 199, 248, 526 |
| BaeGI | GKGCMC | 1 cut(s) | 445 |
| BanI | GGYRCC | 1 cut(s) | 355 |
| Bbv12I | GWGCWC | 1 cut(s) | 445 |
| BccI | CCATC | 3 cut(s) | 121, 338, 464 |
| BciT130I | CCWGG | 3 cut(s) | 270, 318, 436 |
| BcnI | CCSGG | 2 cut(s) | 69, 281 |
| BfaI | CTAG | 1 cut(s) | 423 |
| BmcAI | AGTACT | 1 cut(s) | 49 |
| Bme1390I | CCNGG | 5 cut(s) | 69, 270, 281, 318, 436 |
| BmiI | GGNNCC | 1 cut(s) | 357 |
| BmrFI | CCNGG | 5 cut(s) | 69, 270, 281, 318, 436 |
| BmsI | GCATC | 2 cut(s) | 6, 28 |
| BpuEI | CTTGAG | 1 cut(s) | 321 |
| BpuMI | CCSGG | 2 cut(s) | 69, 281 |
| BsaJI | CCNNGG | 4 cut(s) | 279, 434, 435, 688 |
| BsaWI | WCCGGW | 1 cut(s) | 498 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 55, 85 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 233, 571 |
| Bse1I | ACTGG | 2 cut(s) | 77, 565 |
| BseBI | CCWGG | 3 cut(s) | 270, 318, 436 |
| BseDI | CCNNGG | 4 cut(s) | 279, 434, 435, 688 |
| BseGI | GGATG | 2 cut(s) | 21, 646 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 233, 571 |
| BseMII | CTCAG | 1 cut(s) | 141 |
| BseNI | ACTGG | 2 cut(s) | 77, 565 |
| BseRI | GAGGAG | 1 cut(s) | 650 |
| BseSI | GKGCMC | 1 cut(s) | 445 |
| BshNI | GGYRCC | 1 cut(s) | 355 |
| BsiHKAI | GWGCWC | 1 cut(s) | 445 |
| BsiSI | CCGG | 3 cut(s) | 68, 281, 499 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 233, 571 |
| Bsp1286I | GDGCHC | 1 cut(s) | 445 |
| Bsp1407I | TGTACA | 1 cut(s) | 382 |
| Bsp143I | GATC | 3 cut(s) | 123, 211, 662 |
| BspACI | CCGC | 1 cut(s) | 544 |
| BspCNI | CTCAG | 1 cut(s) | 140 |
| BspLI | GGNNCC | 1 cut(s) | 357 |
| BspPI | GGATC | 1 cut(s) | 219 |
| BspT107I | GGYRCC | 1 cut(s) | 355 |
| BsrGI | TGTACA | 1 cut(s) | 382 |
| BsrI | ACTGG | 2 cut(s) | 77, 565 |
| BssECI | CCNNGG | 4 cut(s) | 279, 434, 435, 688 |
| BssMI | GATC | 3 cut(s) | 123, 211, 662 |
| BssT1I | CCWWGG | 1 cut(s) | 688 |
| Bst2UI | CCWGG | 3 cut(s) | 270, 318, 436 |
| Bst4CI | ACNGT | 2 cut(s) | 52, 387 |
| BstAUI | TGTACA | 1 cut(s) | 382 |
| BstDEI | CTNAG | 4 cut(s) | 28, 127, 141, 215 |
| BstF5I | GGATG | 2 cut(s) | 21, 646 |
| BstKTI | GATC | 3 cut(s) | 126, 214, 665 |
| BstMBI | GATC | 3 cut(s) | 123, 211, 662 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 137, 176, 274, 283, 653 |
| BstNI | CCWGG | 3 cut(s) | 270, 318, 436 |
| BstNSI | RCATGY | 1 cut(s) | 185 |
| BstSCI | CCNGG | 5 cut(s) | 67, 268, 279, 316, 434 |
| BstSLI | GKGCMC | 1 cut(s) | 445 |
| BstX2I | RGATCY | 1 cut(s) | 211 |
| BstYI | RGATCY | 1 cut(s) | 211 |
| BtsCI | GGATG | 2 cut(s) | 21, 646 |
| Csp6I | GTAC | 4 cut(s) | 48, 321, 383, 474 |
| CviAII | CATG | 3 cut(s) | 23, 121, 182 |
| CviJI | RGCY | 6 cut(s) | 76, 131, 170, 219, 484, 647 |
| CviKI_1 | RGCY | 6 cut(s) | 76, 131, 170, 219, 484, 647 |
| CviQI | GTAC | 4 cut(s) | 48, 321, 383, 474 |
| DdeI | CTNAG | 4 cut(s) | 28, 127, 141, 215 |
| DpnI | GATC | 3 cut(s) | 125, 213, 664 |
| DpnII | GATC | 3 cut(s) | 123, 211, 662 |
| Eco130I | CCWWGG | 1 cut(s) | 688 |
| Eco57I | CTGAAG | 1 cut(s) | 389 |
| EcoRI | GAATTC | 1 cut(s) | 190 |
| EcoRII | CCWGG | 3 cut(s) | 268, 316, 434 |
| EcoT14I | CCWWGG | 1 cut(s) | 688 |
| EcoT22I | ATGCAT | 1 cut(s) | 21 |
| ErhI | CCWWGG | 1 cut(s) | 688 |
| FaeI | CATG | 3 cut(s) | 26, 124, 185 |
| FatI | CATG | 3 cut(s) | 22, 120, 181 |
| FauI | CCCGC | 1 cut(s) | 551 |
| FokI | GGATG | 2 cut(s) | 28, 653 |
| FspBI | CTAG | 1 cut(s) | 423 |
| HapII | CCGG | 3 cut(s) | 68, 281, 499 |
| Hin1II | CATG | 3 cut(s) | 26, 124, 185 |
| HincII | GTYRAC | 1 cut(s) | 399 |
| HindII | GTYRAC | 1 cut(s) | 399 |
| HindIII | AAGCTT | 1 cut(s) | 168 |
| HinfI | GANTC | 1 cut(s) | 64 |
| HpaI | GTTAAC | 1 cut(s) | 399 |
| HpaII | CCGG | 3 cut(s) | 68, 281, 499 |
| HphI | GGTGA | 5 cut(s) | 76, 107, 199, 248, 526 |
| Hpy166II | GTNNAC | 3 cut(s) | 98, 399, 443 |
| Hpy188I | TCNGA | 1 cut(s) | 63 |
| Hpy188III | TCNNGA | 3 cut(s) | 245, 257, 708 |
| Hpy8I | GTNNAC | 3 cut(s) | 98, 399, 443 |
| Hpy99I | CGWCG | 1 cut(s) | 364 |
| HpyAV | CCTTC | 1 cut(s) | 364 |
| HpyCH4III | ACNGT | 2 cut(s) | 52, 387 |
| HpyCH4IV | ACGT | 1 cut(s) | 667 |
| HpyCH4V | TGCA | 4 cut(s) | 19, 120, 391, 443 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 137, 176, 274, 283, 653 |
| HpyF3I | CTNAG | 4 cut(s) | 28, 127, 141, 215 |
| HpySE526I | ACGT | 1 cut(s) | 667 |
| Hsp92II | CATG | 3 cut(s) | 26, 124, 185 |
| KspAI | GTTAAC | 1 cut(s) | 399 |
| Kzo9I | GATC | 3 cut(s) | 123, 211, 662 |
| LweI | GCATC | 2 cut(s) | 6, 28 |
| MaeI | CTAG | 1 cut(s) | 423 |
| MaeII | ACGT | 1 cut(s) | 667 |
| MaeIII | GTNAC | 4 cut(s) | 82, 236, 514, 621 |
| MalI | GATC | 3 cut(s) | 125, 213, 664 |
| MboI | GATC | 3 cut(s) | 123, 211, 662 |
| MboII | GAAGA | 4 cut(s) | 157, 272, 472, 475 |
| MflI | RGATCY | 1 cut(s) | 211 |
| MhlI | GDGCHC | 1 cut(s) | 445 |
| MluCI | AATT | 3 cut(s) | 190, 222, 263 |
| MlyI | GAGTC | 1 cut(s) | 73 |
| MnlI | CCTC | 6 cut(s) | 97, 474, 564, 597, 628, 631 |
| Mph1103I | ATGCAT | 1 cut(s) | 21 |
| MseI | TTAA | 3 cut(s) | 134, 398, 630 |
| MspI | CCGG | 3 cut(s) | 68, 281, 499 |
| MspR9I | CCNGG | 5 cut(s) | 69, 270, 281, 318, 436 |
| MvaI | CCWGG | 3 cut(s) | 270, 318, 436 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 137, 176, 274, 283, 653 |
| NciI | CCSGG | 2 cut(s) | 69, 281 |
| NdeII | GATC | 3 cut(s) | 123, 211, 662 |
| NlaIII | CATG | 3 cut(s) | 26, 124, 185 |
| NlaIV | GGNNCC | 1 cut(s) | 357 |
| NmuCI | GTSAC | 3 cut(s) | 82, 236, 514 |
| NsiI | ATGCAT | 1 cut(s) | 21 |
| NspI | RCATGY | 1 cut(s) | 185 |
| PasI | CCCWGGG | 1 cut(s) | 435 |
| PciI | ACATGT | 1 cut(s) | 181 |
| PleI | GAGTC | 1 cut(s) | 72 |
| PpsI | GAGTC | 1 cut(s) | 72 |
| PscI | ACATGT | 1 cut(s) | 181 |
| Psp6I | CCWGG | 3 cut(s) | 268, 316, 434 |
| PspGI | CCWGG | 3 cut(s) | 268, 316, 434 |
| PspN4I | GGNNCC | 1 cut(s) | 357 |
| PsuI | RGATCY | 1 cut(s) | 211 |
| RsaI | GTAC | 4 cut(s) | 49, 322, 384, 475 |
| RsaNI | GTAC | 4 cut(s) | 48, 321, 383, 474 |
| SaqAI | TTAA | 3 cut(s) | 134, 398, 630 |
| Sau3AI | GATC | 3 cut(s) | 123, 211, 662 |
| ScaI | AGTACT | 1 cut(s) | 49 |
| SchI | GAGTC | 1 cut(s) | 73 |
| ScrFI | CCNGG | 5 cut(s) | 69, 270, 281, 318, 436 |
| SduI | GDGCHC | 1 cut(s) | 445 |
| SfaNI | GCATC | 2 cut(s) | 6, 28 |
| SmlI | CTYRAG | 1 cut(s) | 336 |
| SmoI | CTYRAG | 1 cut(s) | 336 |
| Sse9I | AATT | 3 cut(s) | 190, 222, 263 |
| SsiI | CCGC | 1 cut(s) | 544 |
| SspMI | CTAG | 1 cut(s) | 423 |
| StyD4I | CCNGG | 5 cut(s) | 67, 268, 279, 316, 434 |
| StyI | CCWWGG | 1 cut(s) | 688 |
| TaaI | ACNGT | 2 cut(s) | 52, 387 |
| TaiI | ACGT | 1 cut(s) | 670 |
| TaqI | TCGA | 1 cut(s) | 661 |
| TasI | AATT | 3 cut(s) | 190, 222, 263 |
| TatI | WGTACW | 2 cut(s) | 47, 382 |
| Tru1I | TTAA | 3 cut(s) | 134, 398, 630 |
| Tru9I | TTAA | 3 cut(s) | 134, 398, 630 |
| TseFI | GTSAC | 3 cut(s) | 82, 236, 514 |
| Tsp45I | GTSAC | 3 cut(s) | 82, 236, 514 |
| TspGWI | ACGGA | 4 cut(s) | 28, 377, 416, 640 |
| VneI | GTGCAC | 1 cut(s) | 441 |
| XapI | RAATTY | 2 cut(s) | 190, 222 |
| XceI | RCATGY | 1 cut(s) | 185 |
| XspI | CTAG | 1 cut(s) | 423 |
| ZrmI | AGTACT | 1 cut(s) | 49 |
| Zsp2I | ATGCAT | 1 cut(s) | 21 |