FvH4_4g22021

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Reverse (-)
24960228 .. 24970676
10449 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g22021.t2

Sequence Viewer

Length: 2982 bp
ATGACTCGCGCTAGACTGCATGCTATGACCCAGCAGGAGGGTCGTACTTCTCCAGATGTCATCATTGGTACGTTATTGATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTAGATTTGCCCTCCATGCCAATGTGCCATCCTCGTCTCTTCTAGGCGAGTGGCATGTGTCTCTACCCTCCGCGGAATTGAAAGAGTTGAAGACTCAATTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCCGGTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGGAAGCTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTATCATCAGTTGCGGATCCGAGAGGGTGACATAGCCAAGACTGCTTTCCGATCACGTTATGGTCATTATGAATTTGTGGTGATGCCTTTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATATCTTGATCGTTTCGTGATCGTATTTATAGATGACATTTTGGTTTACTCAAGAAGTGAGAAAGAGCATGCCAAGCATCTAAGAATAATATTGCGGACTTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTTGATAAAGTGGGGTTCTTGGGTCATGTGATTTCGGCAGAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGCTACTACTCCTCTCACAAAGTTGACCAGAAAAGGGGTTAAGTTTGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCGGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAGAGAGAGCTTAATATGAGACAGAGAAGATGGATGGAGTTAATCAGTGATTATGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTGTCAGTGGATAAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATTCTTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGGGACTCTATTGTTTAAAAATCGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCATAGCTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCAAGGCTGAAAGGCAGAAGCCTTCAGGATTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGCTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTGGATAAATTGGCGGAGCTCTATGTGAATGAAATTGTGAGGCTTCATGGTGTTCCTGAATCAATAGTGTCAGATCGGGACCCTCGATTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGTTCAGAGGTAGTTGGGATAAAAACCTATCTTTGATGGAATTTGCCTATAATAATAGCTATCATTCTAGCATTGGTATGGCGCCCTTTGAGGCTCTTTATGGGAGGCAGTGTCGCACGCCTTTGTGTTGGAATGAAGTAGGGGAAAAAGAGCTTTGTGGCCCAGAGTTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAAGACTGCTCAGAGTAGGCAGAAAAGTTATGCGGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTGGGTGTTCCTGAAATTATCTCCTTGGAAAGGGATTGTGCGTTTCGGTAAGCGTGGGAAGCTTAGCCCGAGGTATATTGGCCCTTATGAGATTATAGAGCGAGTTGGCTCACTTGCTTATCGATTAGCCTTGCCTCCAGAGTTAGCTAGGATACATAAGGTGTTTCATGTATCCATGCTTCGCAAGTATATTGCCGATCCTTCTCATGTGCTGCAAGAGCAACCGATCAGTTTGACGAGAGATTTGACCTATGAAGAGGAACCGGTTCAGATTCTCGACCGAAAGGAGCAAGTGCTTAGGAACAAGACAATCCCGCTTGTCAAGGTGCTGTGGAGAAGTCATCAAGTAGAAGAAGCTACTTGGGAATCAGAGGAGCAAATGATGCAGCAGTATCCGTATCTCTTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

994

Amino Acids

114.4

Weight (kDa)

9.31

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 2 - 70 1.3e-12 Retroviral aspartyl protease
RVT_1 PF00078 103 - 263 4.9e-36 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 328 - 422 2.6e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 354 - 452 7.3e-33 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 567 - 624 2.6e-20 Integrase zinc binding domain
SH3_Tf2-1 PF24626 856 - 920 3.7e-27 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 881
Acc65I GGTACC 1 cut(s) 2183
AccB1I GGYRCC 4 cut(s) 323, 425, 2183, 2365
AccB7I CCANNNNNTGG 1 cut(s) 823
AccII CGCG 3 cut(s) 9, 212, 572
AccIII TCCGGA 1 cut(s) 1054
AclWI GGATC 8 cut(s) 104, 404, 472, 485, 591, 806, 819, 2762
AcoI YGGCCR 1 cut(s) 1805
AcsI RAATTY 4 cut(s) 533, 2153, 2324, 2555
AcuI CTGAAG 3 cut(s) 1872, 2153, 2182
AcyI GRCGYC 1 cut(s) 2366
AfaI GTAC 4 cut(s) 46, 70, 1969, 2185
AfiI CCNNNNNNNGG 6 cut(s) 37, 823, 966, 1172, 1977, 2600
AgeI ACCGGT 1 cut(s) 2833
AjiI CACGTC 1 cut(s) 1100
AjnI CCWGG 1 cut(s) 1378
AjuI GAANNNNNNNTTGG 4 cut(s) 491, 523, 2039, 2071
AleI CACNNNNGTG 1 cut(s) 857
Alw21I GWGCWC 4 cut(s) 295, 1039, 2076, 2167
Alw26I GTCTC 6 cut(s) 180, 204, 285, 325, 1228, 1315
AlwI GGATC 8 cut(s) 104, 404, 472, 485, 591, 806, 819, 2762
Ama87I CYCGRG 1 cut(s) 2638
Aor13HI TCCGGA 1 cut(s) 1054
AoxI GGCC 5 cut(s) 269, 1541, 1805, 2443, 2650
ApeKI GCWGC 8 cut(s) 1123, 1205, 1628, 1751, 1829, 2174, 2782, 2956
ApoI RAATTY 4 cut(s) 533, 2153, 2324, 2555
ArsI GACNNNNNNTTYG 4 cut(s) 2126, 2158, 2797, 2829
AsiGI ACCGGT 1 cut(s) 2833
Asp700I GAANNNNTTC 1 cut(s) 2835
Asp718I GGTACC 1 cut(s) 2183
AspLEI GCGC 3 cut(s) 11, 909, 2368
AspS9I GGNCC 4 cut(s) 1930, 2134, 2444, 2651
AsuC2I CCSGG 2 cut(s) 114, 1761
AsuHPI GGTGA 6 cut(s) 500, 553, 1930, 2005, 2008, 2579
AsuII TTCGAA 1 cut(s) 1616
AvaI CYCGRG 1 cut(s) 2638
AvaII GGWCC 2 cut(s) 1930, 2134
BalI TGGCCA 1 cut(s) 1807
BamHI GGATCC 2 cut(s) 477, 811
BanI GGYRCC 4 cut(s) 323, 425, 2183, 2365
BanII GRGCYC 2 cut(s) 2076, 2167
BarI GAAGNNNNNNTAC 2 cut(s) 2733, 2765
BbsI GAAGAC 3 cut(s) 236, 853, 1277
Bbv12I GWGCWC 4 cut(s) 295, 1039, 2076, 2167
BbvI GCAGC 8 cut(s) 1135, 1217, 1640, 1738, 1841, 2186, 2769, 2968
BceAI ACGGC 1 cut(s) 1888
BcgI CGANNNNNNTGC 4 cut(s) 23, 57, 1112, 1146
BciT130I CCWGG 1 cut(s) 1380
BciVI GTATCC 3 cut(s) 2715, 2752, 2973
BclI TGATCA 1 cut(s) 412
BcnI CCSGG 2 cut(s) 114, 1761
BcoDI GTCTC 6 cut(s) 180, 204, 285, 325, 1228, 1315
BfaI CTAG 9 cut(s) 12, 138, 182, 273, 1095, 1106, 1152, 2352, 2718
BfmI CTRYAG 1 cut(s) 1482
BfoI RGCGCY 2 cut(s) 910, 2369
BfuAI ACCTGC 1 cut(s) 881
BfuI GTATCC 3 cut(s) 2715, 2752, 2973
BglII AGATCT 1 cut(s) 2548
BlpI GCTNAGC 1 cut(s) 2633
Bme1390I CCNGG 3 cut(s) 114, 1380, 1761
Bme18I GGWCC 2 cut(s) 1930, 2134
BmeT110I CYCGRG 1 cut(s) 2638
BmgBI CACGTC 1 cut(s) 1100
BmgT120I GGNCC 4 cut(s) 1930, 2134, 2444, 2651
BmrFI CCNGG 3 cut(s) 114, 1380, 1761
BmsI GCATC 6 cut(s) 534, 694, 1078, 1110, 1393, 2943
BpiI GAAGAC 3 cut(s) 236, 853, 1277
BplI GAGNNNNNCTC 2 cut(s) 2481, 2513
BpmI CTGGAG 3 cut(s) 36, 1217, 2691
Bpu10I CCTNAGC 1 cut(s) 2867
Bpu1102I GCTNAGC 1 cut(s) 2633
Bpu14I TTCGAA 1 cut(s) 1616
BpuEI CTTGAG 4 cut(s) 643, 1208, 1919, 2483
BpuMI CCSGG 2 cut(s) 114, 1761
Bsa29I ATCGAT 2 cut(s) 399, 2692
BsaHI GRCGYC 1 cut(s) 2366
BsaJI CCNNGG 7 cut(s) 210, 284, 392, 570, 1941, 2594, 2639
BsaWI WCCGGW 3 cut(s) 295, 1054, 2833
Bsc4I CCNNNNNNNGG 6 cut(s) 37, 823, 966, 1172, 1977, 2600
Bse118I RCCGGY 1 cut(s) 2833
Bse1I ACTGG 4 cut(s) 1527, 1544, 1916, 2036
BseAI TCCGGA 1 cut(s) 1054
BseBI CCWGG 1 cut(s) 1380
BseCI ATCGAT 2 cut(s) 399, 2692
BseDI CCNNGG 7 cut(s) 210, 284, 392, 570, 1941, 2594, 2639
BseGI GGATG 7 cut(s) 167, 1063, 1341, 1375, 1756, 2212, 2539
BseLI CCNNNNNNNGG 6 cut(s) 37, 823, 966, 1172, 1977, 2600
BseMII CTCAG 3 cut(s) 1316, 2231, 2522
BseNI ACTGG 4 cut(s) 1527, 1544, 1916, 2036
BseRI GAGGAG 2 cut(s) 933, 2957
BseXI GCAGC 8 cut(s) 1135, 1217, 1640, 1738, 1841, 2186, 2769, 2968
BseYI CCCAGC 1 cut(s) 30
BsgI GTGCAG 1 cut(s) 2007
Bsh1236I CGCG 3 cut(s) 9, 212, 572
Bsh1285I CGRYCG 1 cut(s) 2851
BshFI GGCC 5 cut(s) 271, 1543, 1807, 2445, 2652
BshNI GGYRCC 4 cut(s) 323, 425, 2183, 2365
BshTI ACCGGT 1 cut(s) 2833
BshVI ATCGAT 2 cut(s) 399, 2692
BsiEI CGRYCG 1 cut(s) 2851
BsiHKAI GWGCWC 4 cut(s) 295, 1039, 2076, 2167
BsiHKCI CYCGRG 1 cut(s) 2638
BsiSI CCGG 5 cut(s) 114, 296, 1055, 1760, 2834
BslFI GGGAC 3 cut(s) 1672, 1943, 2147
BslI CCNNNNNNNGG 6 cut(s) 37, 823, 966, 1172, 1977, 2600
BsmAI GTCTC 6 cut(s) 180, 204, 285, 325, 1228, 1315
BsmBI CGTCTC 1 cut(s) 180
BsmFI GGGAC 3 cut(s) 1672, 1943, 2147
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 5 cut(s) 271, 1543, 1807, 2445, 2652
BsoBI CYCGRG 1 cut(s) 2638
Bsp119I TTCGAA 1 cut(s) 1616
Bsp1286I GDGCHC 4 cut(s) 295, 1039, 2076, 2167
Bsp13I TCCGGA 1 cut(s) 1054
Bsp1720I GCTNAGC 1 cut(s) 2633
Bsp19I CCATGG 2 cut(s) 284, 1941
BspANI GGCC 5 cut(s) 271, 1543, 1807, 2445, 2652
BspCNI CTCAG 3 cut(s) 1315, 2230, 2521
BspDI ATCGAT 2 cut(s) 399, 2692
BspEI TCCGGA 1 cut(s) 1054
BspFNI CGCG 3 cut(s) 9, 212, 572
BspHI TCATGA 2 cut(s) 588, 1189
BspMI ACCTGC 1 cut(s) 881
BspPI GGATC 8 cut(s) 104, 404, 472, 485, 591, 806, 819, 2762
BspQI GCTCTTC 1 cut(s) 2172
BspT104I TTCGAA 1 cut(s) 1616
BspT107I GGYRCC 4 cut(s) 323, 425, 2183, 2365
BsrFI RCCGGY 1 cut(s) 2833
BsrI ACTGG 4 cut(s) 1527, 1544, 1916, 2036
BssAI RCCGGY 1 cut(s) 2833
BssECI CCNNGG 7 cut(s) 210, 284, 392, 570, 1941, 2594, 2639
BssNI GRCGYC 1 cut(s) 2366
BssT1I CCWWGG 3 cut(s) 284, 1941, 2594
Bst2UI CCWGG 1 cut(s) 1380
Bst4CI ACNGT 4 cut(s) 370, 859, 1575, 1988
Bst6I CTCTTC 9 cut(s) 183, 1645, 1698, 1706, 1811, 2172, 2201, 2820, 2978
BstACI GRCGYC 1 cut(s) 2366
BstAPI GCANNNNNTGC 2 cut(s) 1751, 2953
BstBI TTCGAA 1 cut(s) 1616
BstC8I GCNNGC 7 cut(s) 21, 93, 678, 998, 1203, 1479, 2402
BstDEI CTNAG 8 cut(s) 689, 732, 1302, 1409, 2217, 2508, 2633, 2867
BstDSI CCRYGG 4 cut(s) 210, 284, 570, 1941
BstENI CCTNNNNNAGG 1 cut(s) 2598
BstF5I GGATG 7 cut(s) 167, 1063, 1341, 1375, 1756, 2212, 2539
BstFNI CGCG 3 cut(s) 9, 212, 572
BstH2I RGCGCY 2 cut(s) 910, 2369
BstHHI GCGC 3 cut(s) 11, 909, 2368
BstMAI GTCTC 6 cut(s) 180, 204, 285, 325, 1228, 1315
BstMCI CGRYCG 1 cut(s) 2851
BstNI CCWGG 1 cut(s) 1380
BstNSI RCATGY 4 cut(s) 23, 197, 280, 680
BstSCI CCNGG 3 cut(s) 112, 1378, 1759
BstSFI CTRYAG 1 cut(s) 1482
BstUI CGCG 3 cut(s) 9, 212, 572
BstV1I GCAGC 8 cut(s) 1135, 1217, 1640, 1738, 1841, 2186, 2769, 2968
BstV2I GAAGAC 3 cut(s) 236, 853, 1277
BstX2I RGATCY 4 cut(s) 477, 583, 811, 2548
BstYI RGATCY 4 cut(s) 477, 583, 811, 2548
Bsu15I ATCGAT 2 cut(s) 399, 2692
BsuI GTATCC 3 cut(s) 2715, 2752, 2973
BsuRI GGCC 5 cut(s) 271, 1543, 1807, 2445, 2652
BsuTUI ATCGAT 2 cut(s) 399, 2692
BtgI CCRYGG 4 cut(s) 210, 284, 570, 1941
BtrI CACGTC 1 cut(s) 1100
BtsCI GGATG 7 cut(s) 167, 1063, 1341, 1375, 1756, 2212, 2539
BtsI GCAGTG 3 cut(s) 837, 2202, 2399
BveI ACCTGC 1 cut(s) 881
Cac8I GCNNGC 7 cut(s) 21, 93, 678, 998, 1203, 1479, 2402
CciI TCATGA 2 cut(s) 588, 1189
CfoI GCGC 3 cut(s) 11, 909, 2368
Cfr10I RCCGGY 1 cut(s) 2833
Cfr13I GGNCC 4 cut(s) 1930, 2134, 2444, 2651
Cfr42I CCGCGG 2 cut(s) 213, 573
ClaI ATCGAT 2 cut(s) 399, 2692
Csp6I GTAC 4 cut(s) 45, 69, 1968, 2184
CspAI ACCGGT 1 cut(s) 2833
CviQI GTAC 4 cut(s) 45, 69, 1968, 2184
DdeI CTNAG 8 cut(s) 689, 732, 1302, 1409, 2217, 2508, 2633, 2867
DinI GGCGCC 1 cut(s) 2367
DraI TTTAAA 1 cut(s) 1672
EaeI YGGCCR 1 cut(s) 1805
Eam1104I CTCTTC 9 cut(s) 183, 1645, 1698, 1706, 1811, 2172, 2201, 2820, 2978
EarI CTCTTC 9 cut(s) 183, 1645, 1698, 1706, 1811, 2172, 2201, 2820, 2978
EciI GGCGGA 1 cut(s) 2084
Ecl136II GAGCTC 2 cut(s) 2074, 2165
Eco130I CCWWGG 3 cut(s) 284, 1941, 2594
Eco24I GRGCYC 2 cut(s) 2076, 2167
Eco47I GGWCC 2 cut(s) 1930, 2134
Eco53kI GAGCTC 2 cut(s) 2074, 2165
Eco57I CTGAAG 3 cut(s) 1872, 2153, 2182
Eco88I CYCGRG 1 cut(s) 2638
EcoICRI GAGCTC 2 cut(s) 2074, 2165
EcoNI CCTNNNNNAGG 1 cut(s) 2598
EcoO109I RGGNCCY 1 cut(s) 2134
EcoRII CCWGG 1 cut(s) 1378
EcoT14I CCWWGG 3 cut(s) 284, 1941, 2594
EcoT22I ATGCAT 1 cut(s) 341
EcoT38I GRGCYC 2 cut(s) 2076, 2167
EgeI GGCGCC 1 cut(s) 2367
EheI GGCGCC 1 cut(s) 2367
ErhI CCWWGG 3 cut(s) 284, 1941, 2594
Esp3I CGTCTC 1 cut(s) 180
FalI AAGNNNNNCTT 2 cut(s) 1010, 1042
FaqI GGGAC 3 cut(s) 1672, 1943, 2147
FauI CCCGC 3 cut(s) 577, 1557, 2892
FauNDI CATATG 1 cut(s) 1747
FbaI TGATCA 1 cut(s) 412
FokI GGATG 7 cut(s) 154, 1070, 1348, 1362, 1743, 2199, 2546
FriOI GRGCYC 2 cut(s) 2076, 2167
FspBI CTAG 9 cut(s) 12, 138, 182, 273, 1095, 1106, 1152, 2352, 2718
GlaI GCGC 3 cut(s) 10, 908, 2367
GsaI CCCAGC 1 cut(s) 34
GsuI CTGGAG 3 cut(s) 36, 1217, 2691
HaeII RGCGCY 2 cut(s) 910, 2369
HaeIII GGCC 5 cut(s) 271, 1543, 1807, 2445, 2652
HapII CCGG 5 cut(s) 114, 296, 1055, 1760, 2834
HhaI GCGC 3 cut(s) 11, 909, 2368
Hin1I GRCGYC 1 cut(s) 2366
Hin6I GCGC 3 cut(s) 9, 907, 2366
HinP1I GCGC 3 cut(s) 9, 907, 2366
HincII GTYRAC 1 cut(s) 957
HindII GTYRAC 1 cut(s) 957
HindIII AAGCTT 1 cut(s) 2630
HpaII CCGG 5 cut(s) 114, 296, 1055, 1760, 2834
HphI GGTGA 6 cut(s) 500, 553, 1930, 2005, 2008, 2579
Hpy166II GTNNAC 3 cut(s) 655, 957, 1299
Hpy8I GTNNAC 3 cut(s) 655, 957, 1299
HpyAV CCTTC 4 cut(s) 791, 1783, 1896, 2781
HpyCH4III ACNGT 4 cut(s) 370, 859, 1575, 1988
HpyCH4IV ACGT 3 cut(s) 71, 517, 1099
HpyF3I CTNAG 8 cut(s) 689, 732, 1302, 1409, 2217, 2508, 2633, 2867
HpySE526I ACGT 3 cut(s) 71, 517, 1099
Hsp92I GRCGYC 1 cut(s) 2366
HspAI GCGC 3 cut(s) 9, 907, 2366
KasI GGCGCC 1 cut(s) 2365
KflI GGGWCCC 1 cut(s) 2134
Kpn2I TCCGGA 1 cut(s) 1054
KpnI GGTACC 1 cut(s) 2187
Ksp22I TGATCA 1 cut(s) 412
KspI CCGCGG 2 cut(s) 213, 573
LguI GCTCTTC 1 cut(s) 2172
Lsp1109I GCAGC 8 cut(s) 1135, 1217, 1640, 1738, 1841, 2186, 2769, 2968
LweI GCATC 6 cut(s) 534, 694, 1078, 1110, 1393, 2943
MaeI CTAG 9 cut(s) 12, 138, 182, 273, 1095, 1106, 1152, 2352, 2718
MaeII ACGT 3 cut(s) 71, 517, 1099
MaeIII GTNAC 4 cut(s) 364, 488, 859, 2461
MfeI CAATTG 2 cut(s) 236, 1157
MflI RGATCY 4 cut(s) 477, 583, 811, 2548
MhlI GDGCHC 4 cut(s) 295, 1039, 2076, 2167
MlsI TGGCCA 1 cut(s) 1807
MluNI TGGCCA 1 cut(s) 1807
Mly113I GGCGCC 1 cut(s) 2366
MlyI GAGTC 5 cut(s) 226, 1291, 1654, 2004, 2490
MmeI TCCRAC 1 cut(s) 2393
Mox20I TGGCCA 1 cut(s) 1807
Mph1103I ATGCAT 1 cut(s) 341
MroI TCCGGA 1 cut(s) 1054
MroXI GAANNNNTTC 1 cut(s) 2835
MscI TGGCCA 1 cut(s) 1807
MseI TTAA 8 cut(s) 104, 309, 972, 1314, 1343, 1671, 2453, 2478
MslI CAYNNNNRTG 5 cut(s) 159, 857, 1772, 1940, 2360
Msp20I TGGCCA 1 cut(s) 1807
MspA1I CMGCKG 3 cut(s) 212, 572, 1208
MspI CCGG 5 cut(s) 114, 296, 1055, 1760, 2834
MspR9I CCNGG 3 cut(s) 114, 1380, 1761
MunI CAATTG 2 cut(s) 236, 1157
Mva1269I GAATGC 1 cut(s) 124
MvaI CCWGG 1 cut(s) 1380
MvnI CGCG 3 cut(s) 9, 212, 572
NarI GGCGCC 1 cut(s) 2366
NciI CCSGG 2 cut(s) 114, 1761
NcoI CCATGG 2 cut(s) 284, 1941
NdeI CATATG 1 cut(s) 1747
NmuCI GTSAC 3 cut(s) 364, 488, 859
NsiI ATGCAT 1 cut(s) 341
NspI RCATGY 4 cut(s) 23, 197, 280, 680
NspV TTCGAA 1 cut(s) 1616
OliI CACNNNNGTG 1 cut(s) 857
PaeI GCATGC 2 cut(s) 23, 680
PagI TCATGA 2 cut(s) 588, 1189
PciSI GCTCTTC 1 cut(s) 2172
PcsI WCGNNNNNNNCGW 1 cut(s) 2137
PctI GAATGC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 2835
PfeI GAWTC 6 cut(s) 358, 868, 1583, 2114, 2842, 2936
PflFI GACNNNGTC 1 cut(s) 1101
PflMI CCANNNNNTGG 1 cut(s) 823
PfoI TCCNGGA 2 cut(s) 112, 1378
PinAI ACCGGT 1 cut(s) 2833
PleI GAGTC 5 cut(s) 226, 1290, 1654, 2004, 2490
PluTI GGCGCC 1 cut(s) 2369
PpsI GAGTC 5 cut(s) 226, 1290, 1654, 2004, 2490
PpuMI RGGWCCY 1 cut(s) 2134
Psp124BI GAGCTC 2 cut(s) 2076, 2167
Psp5II RGGWCCY 1 cut(s) 2134
Psp6I CCWGG 1 cut(s) 1378
PspFI CCCAGC 1 cut(s) 30
PspGI CCWGG 1 cut(s) 1378
PspPI GGNCC 4 cut(s) 1930, 2134, 2444, 2651
PspPPI RGGWCCY 1 cut(s) 2134
PsuI RGATCY 4 cut(s) 477, 583, 811, 2548
PsyI GACNNNGTC 1 cut(s) 1101
RsaI GTAC 4 cut(s) 46, 70, 1969, 2185
RsaNI GTAC 4 cut(s) 45, 69, 1968, 2184
RseI CAYNNNNRTG 5 cut(s) 159, 857, 1772, 1940, 2360
SacI GAGCTC 2 cut(s) 2076, 2167
SacII CCGCGG 2 cut(s) 213, 573
SapI GCTCTTC 1 cut(s) 2172
SaqAI TTAA 8 cut(s) 104, 309, 972, 1314, 1343, 1671, 2453, 2478
Sau96I GGNCC 4 cut(s) 1930, 2134, 2444, 2651
SchI GAGTC 5 cut(s) 226, 1291, 1654, 2004, 2490
ScrFI CCNGG 3 cut(s) 114, 1380, 1761
SduI GDGCHC 4 cut(s) 295, 1039, 2076, 2167
SfaNI GCATC 6 cut(s) 534, 694, 1078, 1110, 1393, 2943
SfcI CTRYAG 1 cut(s) 1482
SfoI GGCGCC 1 cut(s) 2367
Sfr303I CCGCGG 2 cut(s) 213, 573
SfuI TTCGAA 1 cut(s) 1616
SgrBI CCGCGG 2 cut(s) 213, 573
SinI GGWCC 2 cut(s) 1930, 2134
SmiMI CAYNNNNRTG 5 cut(s) 159, 857, 1772, 1940, 2360
SmlI CTYRAG 4 cut(s) 658, 1223, 1898, 2498
SmoI CTYRAG 4 cut(s) 658, 1223, 1898, 2498
SphI GCATGC 2 cut(s) 23, 680
SspDI GGCGCC 1 cut(s) 2365
SspI AATATT 1 cut(s) 699
SspMI CTAG 9 cut(s) 12, 138, 182, 273, 1095, 1106, 1152, 2352, 2718
SstI GAGCTC 2 cut(s) 2076, 2167
StyD4I CCNGG 3 cut(s) 112, 1378, 1759
StyI CCWWGG 3 cut(s) 284, 1941, 2594
TaaI ACNGT 4 cut(s) 370, 859, 1575, 1988
TaiI ACGT 3 cut(s) 74, 520, 1102
TaqI TCGA 9 cut(s) 399, 836, 1132, 1414, 1597, 1616, 2140, 2692, 2847
TaqII GACCGA 1 cut(s) 2865
TauI GCSGC 3 cut(s) 575, 1168, 1628
TfiI GAWTC 6 cut(s) 358, 868, 1583, 2114, 2842, 2936
Tru1I TTAA 8 cut(s) 104, 309, 972, 1314, 1343, 1671, 2453, 2478
Tru9I TTAA 8 cut(s) 104, 309, 972, 1314, 1343, 1671, 2453, 2478
TseFI GTSAC 3 cut(s) 364, 488, 859
TseI GCWGC 8 cut(s) 1123, 1205, 1628, 1751, 1829, 2174, 2782, 2956
Tsp45I GTSAC 3 cut(s) 364, 488, 859
TspGWI ACGGA 4 cut(s) 375, 878, 2528, 2955
Tth111I GACNNNGTC 1 cut(s) 1101
Van91I CCANNNNNTGG 1 cut(s) 823
VpaK11BI GGWCC 2 cut(s) 1930, 2134
XagI CCTNNNNNAGG 1 cut(s) 2598
XapI RAATTY 4 cut(s) 533, 2153, 2324, 2555
XbaI TCTAGA 1 cut(s) 1094
XceI RCATGY 4 cut(s) 23, 197, 280, 680
XcmI CCANNNNNNNNNTGG 1 cut(s) 1923
XmnI GAANNNNTTC 1 cut(s) 2835
XspI CTAG 9 cut(s) 12, 138, 182, 273, 1095, 1106, 1152, 2352, 2718
Zsp2I ATGCAT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.