Rw3G029060
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000094
Physical Location & Seq
Forward (+)
44334856 .. 44342158
7303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G029060.1

Sequence Viewer

Length: 1131 bp
ATGGCCCCAGCTGAATTAAAAGAGTTGAAGACTCAGCTACAAGAACTAGTGGATAACGGATTCATCCAATCTAGTGTGTCTCCTTGGGGTGCCCCGGTTTTATTTGTTAAGAAGAAGGATGGCTCCTTAAGGTTGTGCATTGATTATTGGAAGTTGAATAGGGTTACCGTGAAGAATAAATACCCTTTGCCTCATATCGACGATCTGTTTGATCAGTTGAGGGGAGCCAAGATCTTTTCTAAAATCGATTTGAGATCGGGTTATCATCAGTTGAAGATCAAGGCCATAGTTGATTGGTCTGCCCCCACCAAGGTGCATGATTTGCGCTCATTTCTTGGGCTAGCAAATTACTATCGGAGATTCATAAGAAATTACTCCAAGAGGGTAAGTCCCTTGACAGATTTGTTAAGGAAACAGCACAAGTGGGAATGGACGAGTGAATGTCAGAAGTCCTTTGAAGGACTGAAGGAGGCAGTCACTTCGGCACCAGTATTGGGTCTTCCAGATTTTCAGAAACCCTTTGAAGTCCACACGGATGCCTCAGGTCGAGCTATTGGAGGCGTGTTGGTACAAGAGGGCCATCCATTAGCCTTTGAAAGCCGAAAGTTGAAGGAAGCTGAACAGCGTTATTCAACTCACGAGAAGGAAATGGTTGCTGTAATTCATTGCCTAGACGTGTGGAGGCATTACTTGCTGGTGCACCGAGGTTTGGTTGCAAAGTATGATGGTCCTTTCGAGGTGGTCAAAAGGATTGGAAATGTAGCTTACAGGTTAAAGCTGCCAGAGCGGTTGAAGATTCATCCGACATTCCATGTTAGTTATCTAAAGCCTTTTCACAAAGACTTGGTTGATGGCGGGCGTCAACAAGGGAAAAGGGCTGCTCCTGTCATTCGAAAACAGTTTGACAAACAGGTGGAGAAGATACTCGACCACAGAACCTTGGGACAAAGCAAGAAGATTCGGCGAACCGACTTCTTGGTACAATGGAAAGGAGACAGCGCAGGGGATGCCAGTTGGGAAAGGGATATAACCCTTTGGCAGTTTGAAAAACAGATCAATGAGTACCTAGAAGCACTACCGACGACGAGGGCGTCGTCTAGCTCTAGTGGGGGTGGTTTGTTACACCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo RVT_1 Retrotrans_gag gag-asp_proteas

Protein Analysis

376

Amino Acids

43.29

Weight (kDa)

9.67

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 36 - 112 2.6e-08 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 144 - 234 5.9e-33 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 169 - 234 9.4e-22 RNase H-like domain found in reverse transcriptase
SH3_Tf2-1 PF24626 235 - 279 1.4e-17 Tf2-1-like, SH3 domain
Integrase_p58_C PF22938 243 - 277 7e-06 Integrase p58, C-terminal domain
Chromo PF00385 304 - 357 5.4e-07 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1090
AccB1I GGYRCC 2 cut(s) 89, 484
AccBSI CCGCTC 1 cut(s) 787
AciI CCGC 2 cut(s) 787, 855
AcuI CTGAAG 1 cut(s) 485
AcyI GRCGYC 2 cut(s) 859, 1091
AfaI GTAC 3 cut(s) 570, 981, 1064
AfiI CCNNNNNNNGG 3 cut(s) 310, 494, 709
AflII CTTAAG 1 cut(s) 127
AflIII ACRYGT 1 cut(s) 675
AhlI ACTAGT 1 cut(s) 46
AjiI CACGTC 1 cut(s) 676
AleI CACNNNNGTG 1 cut(s) 311
AluBI AGCT 7 cut(s) 11, 37, 551, 617, 764, 778, 1101
AluI AGCT 7 cut(s) 11, 37, 551, 617, 764, 778, 1101
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 2 cut(s) 84, 987
Alw44I GTGCAC 1 cut(s) 698
AoxI GGCC 3 cut(s) 3, 282, 577
ApaLI GTGCAC 1 cut(s) 698
ApeKI GCWGC 2 cut(s) 778, 878
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
AspLEI GCGC 2 cut(s) 327, 1001
AspS9I GGNCC 3 cut(s) 4, 577, 728
AsuC2I CCSGG 1 cut(s) 95
AsuII TTCGAA 1 cut(s) 892
AsuNHI GCTAGC 1 cut(s) 340
AvaII GGWCC 1 cut(s) 728
AxyI CCTNAGG 1 cut(s) 541
BaeGI GKGCMC 2 cut(s) 94, 702
BanI GGYRCC 2 cut(s) 89, 484
BarI GAAGNNNNNNTAC 4 cut(s) 164, 196, 483, 515
BauI CACGAG 1 cut(s) 638
BbsI GAAGAC 2 cut(s) 35, 491
Bbv12I GWGCWC 1 cut(s) 702
BbvI GCAGC 2 cut(s) 765, 865
BccI CCATC 4 cut(s) 113, 588, 719, 845
BcgI CGANNNNNNTGC 2 cut(s) 462, 496
BclI TGATCA 1 cut(s) 211
BcnI CCSGG 1 cut(s) 95
BcoDI GTCTC 2 cut(s) 84, 987
BcuI ACTAGT 1 cut(s) 46
BfaI CTAG 7 cut(s) 47, 72, 341, 671, 1067, 1098, 1104
BfrI CTTAAG 1 cut(s) 127
BglII AGATCT 1 cut(s) 231
BisI GCNGC 2 cut(s) 779, 879
BlsI GCNGC 2 cut(s) 780, 880
Bme1390I CCNGG 1 cut(s) 95
Bme18I GGWCC 1 cut(s) 728
BmgBI CACGTC 1 cut(s) 676
BmgT120I GGNCC 3 cut(s) 4, 577, 728
BmiI GGNNCC 5 cut(s) 6, 91, 124, 226, 486
BmrFI CCNGG 1 cut(s) 95
BmsI GCATC 2 cut(s) 526, 997
BmtI GCTAGC 1 cut(s) 344
BpiI GAAGAC 2 cut(s) 35, 491
Bpu14I TTCGAA 1 cut(s) 892
BpuMI CCSGG 1 cut(s) 95
Bsa29I ATCGAT 1 cut(s) 246
BsaHI GRCGYC 2 cut(s) 859, 1091
BsaJI CCNNGG 5 cut(s) 83, 93, 309, 703, 939
Bsc4I CCNNNNNNNGG 3 cut(s) 310, 494, 709
Bse1I ACTGG 2 cut(s) 488, 1011
Bse21I CCTNAGG 1 cut(s) 541
Bse3DI GCAATG 1 cut(s) 664
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 5 cut(s) 83, 93, 309, 703, 939
BseGI GGATG 6 cut(s) 63, 124, 541, 580, 799, 1012
BseLI CCNNNNNNNGG 3 cut(s) 310, 494, 709
BseMI GCAATG 1 cut(s) 664
BseMII CTCAG 2 cut(s) 47, 555
BseNI ACTGG 2 cut(s) 488, 1011
BseSI GKGCMC 2 cut(s) 94, 702
BseXI GCAGC 2 cut(s) 765, 865
BseYI CCCAGC 1 cut(s) 7
BshFI GGCC 3 cut(s) 5, 284, 579
BshNI GGYRCC 2 cut(s) 89, 484
BshVI ATCGAT 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 702
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 2 cut(s) 375, 957
BslI CCNNNNNNNGG 3 cut(s) 310, 494, 709
BsmAI GTCTC 2 cut(s) 84, 987
BsmFI GGGAC 2 cut(s) 375, 957
BsnI GGCC 3 cut(s) 5, 284, 579
Bsp119I TTCGAA 1 cut(s) 892
Bsp1286I GDGCHC 2 cut(s) 94, 702
Bsp143I GATC 6 cut(s) 202, 211, 231, 254, 276, 1053
BspACI CCGC 2 cut(s) 787, 855
BspANI GGCC 3 cut(s) 5, 284, 579
BspCNI CTCAG 2 cut(s) 46, 554
BspDI ATCGAT 1 cut(s) 246
BspLI GGNNCC 5 cut(s) 6, 91, 124, 226, 486
BspOI GCTAGC 1 cut(s) 344
BspT104I TTCGAA 1 cut(s) 892
BspT107I GGYRCC 2 cut(s) 89, 484
BspTI CTTAAG 1 cut(s) 127
BsrBI CCGCTC 1 cut(s) 787
BsrDI GCAATG 1 cut(s) 664
BsrI ACTGG 2 cut(s) 488, 1011
BssECI CCNNGG 5 cut(s) 83, 93, 309, 703, 939
BssMI GATC 6 cut(s) 202, 211, 231, 254, 276, 1053
BssNI GRCGYC 2 cut(s) 859, 1091
BssSI CACGAG 1 cut(s) 638
BssT1I CCWWGG 3 cut(s) 83, 309, 939
Bst2BI CACGAG 1 cut(s) 638
Bst4CI ACNGT 2 cut(s) 169, 900
BstACI GRCGYC 2 cut(s) 859, 1091
BstAFI CTTAAG 1 cut(s) 127
BstAPI GCANNNNNTGC 3 cut(s) 322, 691, 1007
BstBI TTCGAA 1 cut(s) 892
BstC8I GCNNGC 2 cut(s) 342, 857
BstDEI CTNAG 3 cut(s) 33, 541, 1128
BstEII GGTNACC 1 cut(s) 163
BstF5I GGATG 6 cut(s) 63, 124, 541, 580, 799, 1012
BstHHI GCGC 2 cut(s) 327, 1001
BstKTI GATC 6 cut(s) 205, 214, 234, 257, 279, 1056
BstMAI GTCTC 2 cut(s) 84, 987
BstMBI GATC 6 cut(s) 202, 211, 231, 254, 276, 1053
BstMWI GCNNNNNNNGC 4 cut(s) 322, 691, 784, 1007
BstPI GGTNACC 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 93
BstSLI GKGCMC 2 cut(s) 94, 702
BstV1I GCAGC 2 cut(s) 765, 865
BstV2I GAAGAC 2 cut(s) 35, 491
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
Bsu15I ATCGAT 1 cut(s) 246
Bsu36I CCTNAGG 1 cut(s) 541
BsuRI GGCC 3 cut(s) 5, 284, 579
BsuTUI ATCGAT 1 cut(s) 246
BtrI CACGTC 1 cut(s) 676
BtsCI GGATG 6 cut(s) 63, 124, 541, 580, 799, 1012
Cac8I GCNNGC 2 cut(s) 342, 857
CfoI GCGC 2 cut(s) 327, 1001
Cfr13I GGNCC 3 cut(s) 4, 577, 728
ClaI ATCGAT 1 cut(s) 246
CseI GACGC 2 cut(s) 848, 1080
Csp6I GTAC 3 cut(s) 569, 980, 1063
CviAII CATG 2 cut(s) 317, 812
CviQI GTAC 3 cut(s) 569, 980, 1063
DdeI CTNAG 3 cut(s) 33, 541, 1128
DpnI GATC 6 cut(s) 204, 213, 233, 256, 278, 1055
DpnII GATC 6 cut(s) 202, 211, 231, 254, 276, 1053
DrdI GACNNNNNNGTC 1 cut(s) 1090
DseDI GACNNNNNNGTC 1 cut(s) 1090
Eco130I CCWWGG 3 cut(s) 83, 309, 939
Eco47I GGWCC 1 cut(s) 728
Eco57I CTGAAG 1 cut(s) 485
Eco81I CCTNAGG 1 cut(s) 541
Eco91I GGTNACC 1 cut(s) 163
EcoO65I GGTNACC 1 cut(s) 163
EcoT14I CCWWGG 3 cut(s) 83, 309, 939
ErhI CCWWGG 3 cut(s) 83, 309, 939
FaeI CATG 2 cut(s) 320, 815
FaiI YATR 7 cut(s) 195, 287, 318, 365, 723, 813, 1028
FaqI GGGAC 2 cut(s) 375, 957
FatI CATG 2 cut(s) 316, 811
FauI CCCGC 1 cut(s) 848
FbaI TGATCA 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 779, 879
FokI GGATG 6 cut(s) 50, 131, 548, 567, 786, 1019
Fsp4HI GCNGC 2 cut(s) 779, 879
FspBI CTAG 7 cut(s) 47, 72, 341, 671, 1067, 1098, 1104
GlaI GCGC 2 cut(s) 326, 1000
GluI GCNGC 2 cut(s) 779, 879
GsaI CCCAGC 1 cut(s) 11
HaeIII GGCC 3 cut(s) 5, 284, 579
HapII CCGG 1 cut(s) 95
HgaI GACGC 2 cut(s) 848, 1080
HhaI GCGC 2 cut(s) 327, 1001
Hin1I GRCGYC 2 cut(s) 859, 1091
Hin1II CATG 2 cut(s) 320, 815
Hin6I GCGC 2 cut(s) 325, 999
HinP1I GCGC 2 cut(s) 325, 999
HincII GTYRAC 1 cut(s) 863
HindII GTYRAC 1 cut(s) 863
HinfI GANTC 5 cut(s) 31, 60, 360, 796, 958
HpaII CCGG 1 cut(s) 95
Hpy166II GTNNAC 3 cut(s) 529, 700, 863
Hpy188I TCNGA 4 cut(s) 357, 447, 513, 804
Hpy188III TCNNGA 2 cut(s) 503, 638
Hpy8I GTNNAC 3 cut(s) 529, 700, 863
Hpy99I CGWCG 4 cut(s) 203, 1084, 1087, 1096
HpyAV CCTTC 5 cut(s) 109, 452, 460, 604, 637
HpyCH4III ACNGT 2 cut(s) 169, 900
HpyCH4IV ACGT 1 cut(s) 675
HpyCH4V TGCA 4 cut(s) 138, 316, 700, 716
HpyF10VI GCNNNNNNNGC 4 cut(s) 322, 691, 784, 1007
HpyF3I CTNAG 3 cut(s) 33, 541, 1128
HpySE526I ACGT 1 cut(s) 675
Hsp92I GRCGYC 2 cut(s) 859, 1091
Hsp92II CATG 2 cut(s) 320, 815
HspAI GCGC 2 cut(s) 325, 999
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 6 cut(s) 202, 211, 231, 254, 276, 1053
LmnI GCTCC 3 cut(s) 128, 224, 886
Lsp1109I GCAGC 2 cut(s) 765, 865
LweI GCATC 2 cut(s) 526, 997
MaeI CTAG 7 cut(s) 47, 72, 341, 671, 1067, 1098, 1104
MaeII ACGT 1 cut(s) 675
MaeIII GTNAC 3 cut(s) 163, 475, 1119
MalI GATC 6 cut(s) 204, 213, 233, 256, 278, 1055
MbiI CCGCTC 1 cut(s) 787
MboI GATC 6 cut(s) 202, 211, 231, 254, 276, 1053
MboII GAAGA 8 cut(s) 40, 124, 184, 286, 491, 805, 931, 967
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 2 cut(s) 94, 702
MluCI AATT 4 cut(s) 14, 346, 370, 660
MlyI GAGTC 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 827
MseI TTAA 5 cut(s) 17, 108, 128, 407, 773
MslI CAYNNNNRTG 2 cut(s) 311, 534
MspA1I CMGCKG 1 cut(s) 11
MspCI CTTAAG 1 cut(s) 127
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 95
MwoI GCNNNNNNNGC 4 cut(s) 322, 691, 784, 1007
NciI CCSGG 1 cut(s) 95
NdeII GATC 6 cut(s) 202, 211, 231, 254, 276, 1053
NheI GCTAGC 1 cut(s) 340
NlaIII CATG 2 cut(s) 320, 815
NlaIV GGNNCC 5 cut(s) 6, 91, 124, 226, 486
NmuCI GTSAC 1 cut(s) 475
NspV TTCGAA 1 cut(s) 892
OliI CACNNNNGTG 1 cut(s) 311
PcsI WCGNNNNNNNCGW 2 cut(s) 1088, 1091
PfeI GAWTC 4 cut(s) 60, 360, 796, 958
PkrI GCNGC 2 cut(s) 780, 880
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
PspEI GGTNACC 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 7
PspN4I GGNNCC 5 cut(s) 6, 91, 124, 226, 486
PspPI GGNCC 3 cut(s) 4, 577, 728
PsuI RGATCY 1 cut(s) 231
PvuII CAGCTG 1 cut(s) 11
RsaI GTAC 3 cut(s) 570, 981, 1064
RsaNI GTAC 3 cut(s) 569, 980, 1063
RseI CAYNNNNRTG 2 cut(s) 311, 534
SaqAI TTAA 5 cut(s) 17, 108, 128, 407, 773
SatI GCNGC 2 cut(s) 779, 879
Sau3AI GATC 6 cut(s) 202, 211, 231, 254, 276, 1053
Sau96I GGNCC 3 cut(s) 4, 577, 728
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 1 cut(s) 95
SduI GDGCHC 2 cut(s) 94, 702
SfaNI GCATC 2 cut(s) 526, 997
SfuI TTCGAA 1 cut(s) 892
SinI GGWCC 1 cut(s) 728
SmiMI CAYNNNNRTG 2 cut(s) 311, 534
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
SpeI ACTAGT 1 cut(s) 46
Sse9I AATT 4 cut(s) 14, 346, 370, 660
SsiI CCGC 2 cut(s) 787, 855
SspMI CTAG 7 cut(s) 47, 72, 341, 671, 1067, 1098, 1104
StyD4I CCNGG 1 cut(s) 93
StyI CCWWGG 3 cut(s) 83, 309, 939
TaaI ACNGT 2 cut(s) 169, 900
TaiI ACGT 1 cut(s) 678
TaqI TCGA 6 cut(s) 198, 246, 547, 735, 892, 927
TasI AATT 4 cut(s) 14, 346, 370, 660
TfiI GAWTC 4 cut(s) 60, 360, 796, 958
Tru1I TTAA 5 cut(s) 17, 108, 128, 407, 773
Tru9I TTAA 5 cut(s) 17, 108, 128, 407, 773
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 2 cut(s) 778, 878
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 4 cut(s) 52, 352, 653, 788
TspGWI ACGGA 2 cut(s) 72, 548
Vha464I CTTAAG 1 cut(s) 127
VneI GTGCAC 1 cut(s) 698
VpaK11BI GGWCC 1 cut(s) 728
XspI CTAG 7 cut(s) 47, 72, 341, 671, 1067, 1098, 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.