FvH4_7g07581

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000094
Physical Location & Seq
Reverse (-)
7471168 .. 7475731
4564 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07581.t1

Sequence Viewer

Length: 4128 bp
ATGCCTCCTAGGCGCCCACGGCAACCCCGTGTGGCTACTTCGACCAATGCCGATGAAGGCAATGAGGTCAGGGGACTGGTTGATGATATTGGGAATATGCTGAGGGATGTCATGGATCGAGCTCCACAACCTCATTCTGTGAAAAGGAGAGAAGTTTTTGAAGCTGGAGCCAGAGAGTTCAAGGGTGCCAAGGGACCCCTTGATGCTTATACTTGGGTGGACAAAATGGAAAAAGCTTTTGCCAGCTCAGAGTTGCCAGATGAAAAGAAGGTGAAGATGGCATCCTGCCCATCGCAGCAGAATTCAGTCAGATTTCCTGAATATAAAGAAGAGGATGATGAAGGCGTTATAGAGTTCCAAGAGAGATTCACTTCCCTGAGCTATCATGTGTCGTATTTGGTTCCTGATGAGAGGACCAGGATGGAGATGTTCATTGGGGCACTTGGTGGAGTGTTTGCGGATAAGATGACGGGTGTTTATTACCCGACTTTCTCTGACGCGGTTCATGCAGCCATGGCCATTGAGTCTATGGGGATTTATAGTGCTCGGCCACGAGATTTCGGTGGTCCCAGTCAGGGTCCATCCAAGAAAGCTGTTTCATCATCCGCTTCAGGTTCATCAGCTGGTAGTGGCAGTAGTGGGGGATCAGCGGGAAGTGGTCAGCGTGGACGTCCTATGACTCGCGCTAGACTGCATGCTATGACCCAGCAGGAGGGTCGTACTTCTCCAGATGTTATCATTGGTACGTTATTGATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACACATTCATTCATGTCTAGTAGATTTGCCCTCCATGCCAATGTGCCATCCTCGTCTCTTCCAGGCGAGTGGCATGTGTCTCTACCCTCCGGTGAGGTGATGAGAATAAATTGGGTATTTAGTGGCTGTGAAGTGGTAGTGGAAGGAGTTAATTTCGAGGCTGATTTAATTCCTTTAGATATAGTGGAGTTTGATGTGATCTTGGGAATGGACTTTTTGGAAGCATATAGAGCTATGGTAGATTGTTTTCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTTTGAGGTTGCTTTCCAAGGGGAAAGAGATGTTATTTTTAGTTGCATAATTTCCGCTGTTGCTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTCTAGCTCATGTGGTGGATACAAGTATGGGAGTTGTGGGATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGATATAGACTTCTTTATAGAATTACTTCCCGGAACTATGCCGATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAATTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCCAGTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGGAAGCTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGACTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTATCATCAGTTACGGATCCGAGAGGGGGACATAGCCAAGACTGCTTTTCGGTCACGATATGGTCATTATGAATTTGAGGTGATGCCTTTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATATCTTGATCGTTTCGTGATCGTATTCATAGATGATATCTTGGTTTACTCAAGAAGTGAGAAAGAGCATGCCAAGCATCTAAGAATAATATTGCGGACCTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTTGATAAAGTGGGGTTCTTGGGTCATGTGATTTCGGCAGAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGCTACTCCTCTCACAAAGTTGACCAGAAAAGGGGTTAAGTATGAATGGTCAGATCAGTGCGAGCAAAGTTTTCAAGAATTGAAGAATTGCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACGTGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCAGTAGTTTTTGCTCTCAAGTTGTGGAGACATTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTGTTCACTCAGAGAGAGCTTAATATGAGACAGAGAAGATGGATGGAGTTAATCAGTGATTATGATTGCACTATTGAGTATCATCCTGGAAAAGCTAATGTGGTAGCTGATGCTCTTAGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTGTCAGTGGATGAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATCCTTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATGGAACTCTATTGTTTAAAAATCGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCATAGCTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCAAGGCTGAAAGGCAGAAGCCTTCAGGATTGCTTGAGCCGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGCTTACCTCGTACCCGTGATGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTGGATAAATTGGCGGAGCTCTATGTGAATGAAATTGTGAGGCTTCATGGTGTTCCTGAATCAATAGTGTCAGATCGGGACCCTCGATTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGCACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGTTCAGAGGTAGTTGGGATAAAAACCTATCTTTAATGGAATTTGCCTATAATAATAGCTATCATTCTAGCATTGGTATGGCGCCCTTTGAGGCTCTTTATGGAAGGCAGTGTCGTACGCCTTTGTGCTGGAATGAAGTAGGGGAAAAAGAGCTTTGCGGCCCAGAGTTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAAGACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTCCGTAGGAGAGATCTTGAATTTCAAGTGGGTGATTGGGTGTTCCTGAAATTATCTCCTTGGAAAGGAGTTGTGCGTTTCGGTAAGCGTGGGAAGCTTAGTCCGAGGTATATTGGCCCTTATGAGATTATAGAGCGAGTTGGCTCACTTGCTTATCGATTAGCCTTGCCTCCAGAGTTAGCTAGGATACATAAGGTGTTTCATGTATCCATGCTTCGCAAGTATATTGCCGATCCTTCTCATGTGCTGCAAGAGCAACCGATCAGTTTGACGAGAGATTTGACCTATGAAGAGGAACCGGTTCAGATTCTCGACCGAAAGGAGCAAGTGCTTAGGAACAAGACAATCCCGCTTGTCAAGGTGCTGTGGAGAAGTCATCAAGTAGAAGAAGCTACTTGGGAATCAGAGGAGCAAATGATGCAGCAGTATCCGTTTCTCTTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

1376

Amino Acids

156.11

Weight (kDa)

8.53

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 226 - 356 1.5e-33 Retroviral aspartyl protease
RVT_1 PF00078 487 - 647 3.2e-36 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 710 - 804 3.9e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 736 - 834 1.1e-32 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 949 - 1006 3.8e-20 Integrase zinc binding domain
SH3_Tf2-1 PF24626 1238 - 1302 3.9e-27 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 673
Acc36I ACCTGC 1 cut(s) 2033
Acc65I GGTACC 1 cut(s) 3329
AccB1I GGYRCC 7 cut(s) 12, 185, 1342, 1475, 1577, 3329, 3511
AccB7I CCANNNNNTGG 1 cut(s) 1975
AccBSI CCGCTC 1 cut(s) 3653
AccII CGCG 3 cut(s) 500, 684, 1724
AccIII TCCGGA 2 cut(s) 1246, 2200
AcoI YGGCCR 3 cut(s) 516, 548, 2951
AcsI RAATTY 5 cut(s) 301, 1685, 3299, 3470, 3701
AcuI CTGAAG 4 cut(s) 594, 3018, 3299, 3328
AcyI GRCGYC 4 cut(s) 13, 670, 1343, 3512
AdeI CACNNNGTG 1 cut(s) 446
AfaI GTAC 5 cut(s) 721, 745, 3115, 3331, 3547
AfiI CCNNNNNNNGG 8 cut(s) 575, 712, 1639, 1975, 2112, 2318, 3123, 3746
AgeI ACCGGT 1 cut(s) 3979
AjiI CACGTC 1 cut(s) 2246
AjnI CCWGG 4 cut(s) 416, 856, 1270, 2524
AjuI GAANNNNNNNTTGG 2 cut(s) 3185, 3217
AleI CACNNNNGTG 1 cut(s) 2009
Alw21I GWGCWC 6 cut(s) 124, 547, 1447, 2185, 3222, 3313
Alw26I GTCTC 6 cut(s) 855, 879, 1437, 1477, 2374, 2461
Aor13HI TCCGGA 2 cut(s) 1246, 2200
AoxI GGCC 7 cut(s) 516, 548, 1421, 2687, 2951, 3589, 3796
ApoI RAATTY 5 cut(s) 301, 1685, 3299, 3470, 3701
ArsI GACNNNNNNTTYG 4 cut(s) 3272, 3304, 3943, 3975
AsiGI ACCGGT 1 cut(s) 3979
Asp700I GAANNNNTTC 3 cut(s) 1224, 1314, 3981
Asp718I GGTACC 1 cut(s) 3329
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 5 cut(s) 15, 686, 1345, 2058, 3514
AspS9I GGNCC 9 cut(s) 194, 414, 566, 578, 1857, 3076, 3280, 3590, 3797
AsuC2I CCSGG 3 cut(s) 789, 1320, 2907
AsuHPI GGTGA 8 cut(s) 283, 899, 904, 1705, 3076, 3151, 3154, 3725
AsuII TTCGAA 2 cut(s) 1063, 2762
AvaII GGWCC 7 cut(s) 194, 414, 566, 578, 1857, 3076, 3280
AvrII CCTAGG 1 cut(s) 8
AxyI CCTNAGG 1 cut(s) 1260
BaeGI GKGCMC 1 cut(s) 442
BalI TGGCCA 2 cut(s) 518, 2953
BamHI GGATCC 2 cut(s) 1629, 1963
BanI GGYRCC 7 cut(s) 12, 185, 1342, 1475, 1577, 3329, 3511
BanII GRGCYC 3 cut(s) 124, 3222, 3313
BarI GAAGNNNNNNTAC 4 cut(s) 1044, 1076, 3879, 3911
BauI CACGAG 1 cut(s) 552
BbsI GAAGAC 3 cut(s) 1388, 2005, 2423
Bbv12I GWGCWC 6 cut(s) 124, 547, 1447, 2185, 3222, 3313
BbvCI CCTCAGC 1 cut(s) 101
BceAI ACGGC 2 cut(s) 35, 3034
BcgI CGANNNNNNTGC 4 cut(s) 698, 732, 2258, 2292
BciT130I CCWGG 4 cut(s) 418, 858, 1272, 2526
BciVI GTATCC 4 cut(s) 1186, 3861, 3898, 4119
BclI TGATCA 1 cut(s) 1564
BcnI CCSGG 3 cut(s) 789, 1320, 2907
BcoDI GTCTC 6 cut(s) 855, 879, 1437, 1477, 2374, 2461
BfmI CTRYAG 2 cut(s) 1230, 2628
BfoI RGCGCY 4 cut(s) 16, 1346, 2059, 3515
BfuAI ACCTGC 1 cut(s) 2033
BfuI GTATCC 4 cut(s) 1186, 3861, 3898, 4119
BglI GCCNNNNNGGC 1 cut(s) 10
BglII AGATCT 1 cut(s) 3694
BlnI CCTAGG 1 cut(s) 8
Bme1390I CCNGG 7 cut(s) 418, 789, 858, 1272, 1320, 2526, 2907
Bme18I GGWCC 7 cut(s) 194, 414, 566, 578, 1857, 3076, 3280
BmgBI CACGTC 1 cut(s) 2246
BmgT120I GGNCC 9 cut(s) 194, 414, 566, 578, 1857, 3076, 3280, 3590, 3797
BmrFI CCNGG 7 cut(s) 418, 789, 858, 1272, 1320, 2526, 2907
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 8 cut(s) 193, 290, 1686, 1846, 2224, 2256, 2539, 4089
BmuI ACTGGG 1 cut(s) 564
BpiI GAAGAC 3 cut(s) 1388, 2005, 2423
BplI GAGNNNNNCTC 2 cut(s) 3627, 3659
BpmI CTGGAG 6 cut(s) 186, 711, 1344, 1431, 2363, 3837
Bpu10I CCTNAGC 3 cut(s) 101, 377, 4013
Bpu14I TTCGAA 2 cut(s) 1063, 2762
BpuEI CTTGAG 4 cut(s) 1795, 2354, 3065, 3629
BpuMI CCSGG 3 cut(s) 789, 1320, 2907
Bsa29I ATCGAT 2 cut(s) 1551, 3838
BsaHI GRCGYC 4 cut(s) 13, 670, 1343, 3512
BsaWI WCCGGW 4 cut(s) 884, 1246, 2200, 3979
BsaXI ACNNNNNCTCC 8 cut(s) 1944, 1974, 2167, 2197, 2205, 2235, 3395, 3425
Bsc4I CCNNNNNNNGG 8 cut(s) 575, 712, 1639, 1975, 2112, 2318, 3123, 3746
Bse118I RCCGGY 1 cut(s) 3979
Bse1I ACTGG 7 cut(s) 81, 570, 1448, 2673, 2690, 3062, 3182
Bse21I CCTNAGG 1 cut(s) 1260
Bse3DI GCAATG 1 cut(s) 67
BseAI TCCGGA 2 cut(s) 1246, 2200
BseBI CCWGG 4 cut(s) 418, 858, 1272, 2526
BseCI ATCGAT 2 cut(s) 1551, 3838
BseLI CCNNNNNNNGG 8 cut(s) 575, 712, 1639, 1975, 2112, 2318, 3123, 3746
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 8 cut(s) 92, 261, 368, 1251, 1352, 2462, 3377, 3668
BseNI ACTGG 7 cut(s) 81, 570, 1448, 2673, 2690, 3062, 3182
BseRI GAGGAG 3 cut(s) 1277, 2079, 4103
BseSI GKGCMC 1 cut(s) 442
BseYI CCCAGC 1 cut(s) 705
BsgI GTGCAG 1 cut(s) 3153
Bsh1236I CGCG 3 cut(s) 500, 684, 1724
Bsh1285I CGRYCG 1 cut(s) 3997
BshFI GGCC 7 cut(s) 518, 550, 1423, 2689, 2953, 3591, 3798
BshNI GGYRCC 7 cut(s) 12, 185, 1342, 1475, 1577, 3329, 3511
BshTI ACCGGT 1 cut(s) 3979
BshVI ATCGAT 2 cut(s) 1551, 3838
BsiEI CGRYCG 1 cut(s) 3997
BsiHKAI GWGCWC 6 cut(s) 124, 547, 1447, 2185, 3222, 3313
BsiSI CCGG 7 cut(s) 789, 885, 1247, 1320, 2201, 2906, 3980
BsiWI CGTACG 1 cut(s) 3545
BslFI GGGAC 6 cut(s) 87, 207, 552, 1655, 3089, 3293
BslI CCNNNNNNNGG 8 cut(s) 575, 712, 1639, 1975, 2112, 2318, 3123, 3746
BsmAI GTCTC 6 cut(s) 855, 879, 1437, 1477, 2374, 2461
BsmBI CGTCTC 1 cut(s) 855
BsmFI GGGAC 6 cut(s) 87, 207, 552, 1655, 3089, 3293
BsnI GGCC 7 cut(s) 518, 550, 1423, 2689, 2953, 3591, 3798
Bsp119I TTCGAA 2 cut(s) 1063, 2762
Bsp1286I GDGCHC 7 cut(s) 124, 442, 547, 1447, 2185, 3222, 3313
Bsp13I TCCGGA 2 cut(s) 1246, 2200
Bsp19I CCATGG 3 cut(s) 513, 1436, 3087
BspANI GGCC 7 cut(s) 518, 550, 1423, 2689, 2953, 3591, 3798
BspCNI CTCAG 8 cut(s) 93, 260, 369, 1252, 1351, 2461, 3376, 3667
BspDI ATCGAT 2 cut(s) 1551, 3838
BspEI TCCGGA 2 cut(s) 1246, 2200
BspFNI CGCG 3 cut(s) 500, 684, 1724
BspHI TCATGA 2 cut(s) 1740, 2335
BspMI ACCTGC 1 cut(s) 2033
BspQI GCTCTTC 1 cut(s) 3318
BspT104I TTCGAA 2 cut(s) 1063, 2762
BspT107I GGYRCC 7 cut(s) 12, 185, 1342, 1475, 1577, 3329, 3511
BsrBI CCGCTC 1 cut(s) 3653
BsrDI GCAATG 1 cut(s) 67
BsrFI RCCGGY 1 cut(s) 3979
BsrI ACTGG 7 cut(s) 81, 570, 1448, 2673, 2690, 3062, 3182
BssAI RCCGGY 1 cut(s) 3979
BssNI GRCGYC 4 cut(s) 13, 670, 1343, 3512
BssSI CACGAG 1 cut(s) 552
BssT1I CCWWGG 8 cut(s) 8, 189, 513, 1093, 1436, 1860, 3087, 3740
Bst2BI CACGAG 1 cut(s) 552
Bst2UI CCWGG 4 cut(s) 418, 858, 1272, 2526
Bst4CI ACNGT 4 cut(s) 1522, 2011, 2721, 3134
BstACI GRCGYC 4 cut(s) 13, 670, 1343, 3512
BstAPI GCANNNNNTGC 2 cut(s) 2897, 4099
BstBI TTCGAA 2 cut(s) 1063, 2762
BstC8I GCNNGC 7 cut(s) 244, 696, 768, 1830, 2144, 2349, 2625
BstDSI CCRYGG 5 cut(s) 17, 513, 1436, 1722, 3087
BstENI CCTNNNNNAGG 1 cut(s) 3744
BstFNI CGCG 3 cut(s) 500, 684, 1724
BstH2I RGCGCY 4 cut(s) 16, 1346, 2059, 3515
BstHHI GCGC 5 cut(s) 15, 686, 1345, 2058, 3514
BstMAI GTCTC 6 cut(s) 855, 879, 1437, 1477, 2374, 2461
BstMCI CGRYCG 1 cut(s) 3997
BstNI CCWGG 4 cut(s) 418, 858, 1272, 2526
BstNSI RCATGY 4 cut(s) 698, 872, 1432, 1832
BstSCI CCNGG 7 cut(s) 416, 787, 856, 1270, 1318, 2524, 2905
BstSFI CTRYAG 2 cut(s) 1230, 2628
BstSLI GKGCMC 1 cut(s) 442
BstUI CGCG 3 cut(s) 500, 684, 1724
BstV2I GAAGAC 3 cut(s) 1388, 2005, 2423
BstX2I RGATCY 4 cut(s) 1629, 1735, 1963, 3694
BstXI CCANNNNNNTGG 1 cut(s) 864
BstYI RGATCY 4 cut(s) 1629, 1735, 1963, 3694
Bsu15I ATCGAT 2 cut(s) 1551, 3838
Bsu36I CCTNAGG 1 cut(s) 1260
BsuI GTATCC 4 cut(s) 1186, 3861, 3898, 4119
BsuRI GGCC 7 cut(s) 518, 550, 1423, 2689, 2953, 3591, 3798
BsuTUI ATCGAT 2 cut(s) 1551, 3838
BtgI CCRYGG 5 cut(s) 17, 513, 1436, 1722, 3087
BtgZI GCGATG 1 cut(s) 276
BtrI CACGTC 1 cut(s) 2246
BtsI GCAGTG 3 cut(s) 1989, 3348, 3545
BveI ACCTGC 1 cut(s) 2033
Cac8I GCNNGC 7 cut(s) 244, 696, 768, 1830, 2144, 2349, 2625
CciI TCATGA 2 cut(s) 1740, 2335
CfoI GCGC 5 cut(s) 15, 686, 1345, 2058, 3514
Cfr10I RCCGGY 1 cut(s) 3979
Cfr13I GGNCC 9 cut(s) 194, 414, 566, 578, 1857, 3076, 3280, 3590, 3797
Cfr42I CCGCGG 1 cut(s) 1725
ClaI ATCGAT 2 cut(s) 1551, 3838
CseI GACGC 1 cut(s) 506
Csp6I GTAC 5 cut(s) 720, 744, 3114, 3330, 3546
CspAI ACCGGT 1 cut(s) 3979
CviQI GTAC 5 cut(s) 720, 744, 3114, 3330, 3546
DinI GGCGCC 3 cut(s) 14, 1344, 3513
DraI TTTAAA 1 cut(s) 2818
DraIII CACNNNGTG 1 cut(s) 446
EaeI YGGCCR 3 cut(s) 516, 548, 2951
EciI GGCGGA 1 cut(s) 3230
Ecl136II GAGCTC 3 cut(s) 122, 3220, 3311
Eco130I CCWWGG 8 cut(s) 8, 189, 513, 1093, 1436, 1860, 3087, 3740
Eco24I GRGCYC 3 cut(s) 124, 3222, 3313
Eco32I GATATC 1 cut(s) 1798
Eco47I GGWCC 7 cut(s) 194, 414, 566, 578, 1857, 3076, 3280
Eco53kI GAGCTC 3 cut(s) 122, 3220, 3311
Eco57I CTGAAG 4 cut(s) 594, 3018, 3299, 3328
Eco81I CCTNAGG 1 cut(s) 1260
EcoICRI GAGCTC 3 cut(s) 122, 3220, 3311
EcoNI CCTNNNNNAGG 1 cut(s) 3744
EcoO109I RGGNCCY 2 cut(s) 194, 3280
EcoRI GAATTC 1 cut(s) 301
EcoRII CCWGG 4 cut(s) 416, 856, 1270, 2524
EcoRV GATATC 1 cut(s) 1798
EcoT14I CCWWGG 8 cut(s) 8, 189, 513, 1093, 1436, 1860, 3087, 3740
EcoT22I ATGCAT 1 cut(s) 1493
EcoT38I GRGCYC 3 cut(s) 124, 3222, 3313
EgeI GGCGCC 3 cut(s) 14, 1344, 3513
EheI GGCGCC 3 cut(s) 14, 1344, 3513
ErhI CCWWGG 8 cut(s) 8, 189, 513, 1093, 1436, 1860, 3087, 3740
Esp3I CGTCTC 1 cut(s) 855
FalI AAGNNNNNCTT 2 cut(s) 2156, 2188
FaqI GGGAC 6 cut(s) 87, 207, 552, 1655, 3089, 3293
FauI CCCGC 4 cut(s) 643, 1729, 2703, 4038
FauNDI CATATG 1 cut(s) 2893
FbaI TGATCA 1 cut(s) 1564
FriOI GRGCYC 3 cut(s) 124, 3222, 3313
GlaI GCGC 5 cut(s) 14, 685, 1344, 2057, 3513
GsaI CCCAGC 1 cut(s) 709
GsuI CTGGAG 6 cut(s) 186, 711, 1344, 1431, 2363, 3837
HaeII RGCGCY 4 cut(s) 16, 1346, 2059, 3515
HaeIII GGCC 7 cut(s) 518, 550, 1423, 2689, 2953, 3591, 3798
HapII CCGG 7 cut(s) 789, 885, 1247, 1320, 2201, 2906, 3980
HgaI GACGC 1 cut(s) 506
HhaI GCGC 5 cut(s) 15, 686, 1345, 2058, 3514
Hin1I GRCGYC 4 cut(s) 13, 670, 1343, 3512
Hin6I GCGC 5 cut(s) 13, 684, 1343, 2056, 3512
HinP1I GCGC 5 cut(s) 13, 684, 1343, 2056, 3512
HincII GTYRAC 1 cut(s) 2103
HindII GTYRAC 1 cut(s) 2103
HindIII AAGCTT 2 cut(s) 234, 3776
HpaII CCGG 7 cut(s) 789, 885, 1247, 1320, 2201, 2906, 3980
HphI GGTGA 8 cut(s) 283, 899, 904, 1705, 3076, 3151, 3154, 3725
Hpy166II GTNNAC 5 cut(s) 220, 668, 1807, 2103, 2445
Hpy8I GTNNAC 5 cut(s) 220, 668, 1807, 2103, 2445
HpyCH4III ACNGT 4 cut(s) 1522, 2011, 2721, 3134
HpyCH4IV ACGT 3 cut(s) 670, 746, 2245
HpySE526I ACGT 3 cut(s) 670, 746, 2245
Hsp92I GRCGYC 4 cut(s) 13, 670, 1343, 3512
HspAI GCGC 5 cut(s) 13, 684, 1343, 2056, 3512
KasI GGCGCC 3 cut(s) 12, 1342, 3511
KflI GGGWCCC 2 cut(s) 194, 3280
Kpn2I TCCGGA 2 cut(s) 1246, 2200
KpnI GGTACC 1 cut(s) 3333
Ksp22I TGATCA 1 cut(s) 1564
KspI CCGCGG 1 cut(s) 1725
LguI GCTCTTC 1 cut(s) 3318
LweI GCATC 8 cut(s) 193, 290, 1686, 1846, 2224, 2256, 2539, 4089
MaeII ACGT 3 cut(s) 670, 746, 2245
MaeIII GTNAC 5 cut(s) 1516, 1623, 1665, 2011, 3607
MbiI CCGCTC 1 cut(s) 3653
MfeI CAATTG 2 cut(s) 1388, 2303
MflI RGATCY 4 cut(s) 1629, 1735, 1963, 3694
MhlI GDGCHC 7 cut(s) 124, 442, 547, 1447, 2185, 3222, 3313
MlsI TGGCCA 2 cut(s) 518, 2953
MluNI TGGCCA 2 cut(s) 518, 2953
Mly113I GGCGCC 3 cut(s) 13, 1343, 3512
MlyI GAGTC 6 cut(s) 533, 673, 1378, 2437, 3150, 3636
Mox20I TGGCCA 2 cut(s) 518, 2953
Mph1103I ATGCAT 1 cut(s) 1493
MroI TCCGGA 2 cut(s) 1246, 2200
MroXI GAANNNNTTC 3 cut(s) 1224, 1314, 3981
MscI TGGCCA 2 cut(s) 518, 2953
MslI CAYNNNNRTG 5 cut(s) 834, 2009, 2918, 3086, 3506
Msp20I TGGCCA 2 cut(s) 518, 2953
MspA1I CMGCKG 5 cut(s) 623, 650, 1133, 1364, 1724
MspI CCGG 7 cut(s) 789, 885, 1247, 1320, 2201, 2906, 3980
MspR9I CCNGG 7 cut(s) 418, 789, 858, 1272, 1320, 2526, 2907
MunI CAATTG 2 cut(s) 1388, 2303
MvaI CCWGG 4 cut(s) 418, 858, 1272, 2526
MvnI CGCG 3 cut(s) 500, 684, 1724
NarI GGCGCC 3 cut(s) 13, 1343, 3512
NciI CCSGG 3 cut(s) 789, 1320, 2907
NcoI CCATGG 3 cut(s) 513, 1436, 3087
NdeI CATATG 1 cut(s) 2893
NmeAIII GCCGAG 1 cut(s) 526
NmuCI GTSAC 3 cut(s) 1516, 1665, 2011
NsiI ATGCAT 1 cut(s) 1493
NspI RCATGY 4 cut(s) 698, 872, 1432, 1832
NspV TTCGAA 2 cut(s) 1063, 2762
OliI CACNNNNGTG 1 cut(s) 2009
PaeI GCATGC 2 cut(s) 698, 1832
PagI TCATGA 2 cut(s) 1740, 2335
PciSI GCTCTTC 1 cut(s) 3318
PcsI WCGNNNNNNNCGW 2 cut(s) 25, 3283
PdmI GAANNNNTTC 3 cut(s) 1224, 1314, 3981
PfeI GAWTC 6 cut(s) 366, 1510, 2020, 3260, 3988, 4082
Pfl23II CGTACG 1 cut(s) 3545
PflFI GACNNNGTC 1 cut(s) 2247
PflMI CCANNNNNTGG 1 cut(s) 1975
PfoI TCCNGGA 3 cut(s) 787, 1318, 2524
PinAI ACCGGT 1 cut(s) 3979
PleI GAGTC 6 cut(s) 532, 673, 1378, 2436, 3150, 3636
PluTI GGCGCC 3 cut(s) 16, 1346, 3515
PpsI GAGTC 6 cut(s) 532, 673, 1378, 2436, 3150, 3636
PpuMI RGGWCCY 2 cut(s) 194, 3280
Psp124BI GAGCTC 3 cut(s) 124, 3222, 3313
Psp5II RGGWCCY 2 cut(s) 194, 3280
Psp6I CCWGG 4 cut(s) 416, 856, 1270, 2524
PspFI CCCAGC 1 cut(s) 705
PspGI CCWGG 4 cut(s) 416, 856, 1270, 2524
PspLI CGTACG 1 cut(s) 3545
PspPI GGNCC 9 cut(s) 194, 414, 566, 578, 1857, 3076, 3280, 3590, 3797
PspPPI RGGWCCY 2 cut(s) 194, 3280
PsuI RGATCY 4 cut(s) 1629, 1735, 1963, 3694
PsyI GACNNNGTC 1 cut(s) 2247
PvuII CAGCTG 1 cut(s) 623
RsaI GTAC 5 cut(s) 721, 745, 3115, 3331, 3547
RsaNI GTAC 5 cut(s) 720, 744, 3114, 3330, 3546
RseI CAYNNNNRTG 5 cut(s) 834, 2009, 2918, 3086, 3506
SacI GAGCTC 3 cut(s) 124, 3222, 3313
SacII CCGCGG 1 cut(s) 1725
SapI GCTCTTC 1 cut(s) 3318
Sau96I GGNCC 9 cut(s) 194, 414, 566, 578, 1857, 3076, 3280, 3590, 3797
SchI GAGTC 6 cut(s) 533, 673, 1378, 2437, 3150, 3636
ScrFI CCNGG 7 cut(s) 418, 789, 858, 1272, 1320, 2526, 2907
SduI GDGCHC 7 cut(s) 124, 442, 547, 1447, 2185, 3222, 3313
SfaNI GCATC 8 cut(s) 193, 290, 1686, 1846, 2224, 2256, 2539, 4089
SfcI CTRYAG 2 cut(s) 1230, 2628
SfoI GGCGCC 3 cut(s) 14, 1344, 3513
Sfr303I CCGCGG 1 cut(s) 1725
SfuI TTCGAA 2 cut(s) 1063, 2762
SgrBI CCGCGG 1 cut(s) 1725
SinI GGWCC 7 cut(s) 194, 414, 566, 578, 1857, 3076, 3280
SmiMI CAYNNNNRTG 5 cut(s) 834, 2009, 2918, 3086, 3506
SmlI CTYRAG 4 cut(s) 1810, 2369, 3044, 3644
SmoI CTYRAG 4 cut(s) 1810, 2369, 3044, 3644
SphI GCATGC 2 cut(s) 698, 1832
SspDI GGCGCC 3 cut(s) 12, 1342, 3511
SspI AATATT 1 cut(s) 1851
SstI GAGCTC 3 cut(s) 124, 3222, 3313
StyD4I CCNGG 7 cut(s) 416, 787, 856, 1270, 1318, 2524, 2905
StyI CCWWGG 8 cut(s) 8, 189, 513, 1093, 1436, 1860, 3087, 3740
TaaI ACNGT 4 cut(s) 1522, 2011, 2721, 3134
TaiI ACGT 3 cut(s) 673, 749, 2248
TaqII GACCGA 2 cut(s) 1653, 4011
TauI GCSGC 4 cut(s) 1727, 2314, 2774, 3591
TfiI GAWTC 6 cut(s) 366, 1510, 2020, 3260, 3988, 4082
TseFI GTSAC 3 cut(s) 1516, 1665, 2011
Tsp45I GTSAC 3 cut(s) 1516, 1665, 2011
TspGWI ACGGA 5 cut(s) 1527, 1642, 2030, 3674, 4101
Tth111I GACNNNGTC 1 cut(s) 2247
Van91I CCANNNNNTGG 1 cut(s) 1975
VpaK11BI GGWCC 7 cut(s) 194, 414, 566, 578, 1857, 3076, 3280
XagI CCTNNNNNAGG 1 cut(s) 3744
XapI RAATTY 5 cut(s) 301, 1685, 3299, 3470, 3701
XbaI TCTAGA 1 cut(s) 2240
XceI RCATGY 4 cut(s) 698, 872, 1432, 1832
XcmI CCANNNNNNNNNTGG 2 cut(s) 526, 3069
XmaJI CCTAGG 1 cut(s) 8
XmnI GAANNNNTTC 3 cut(s) 1224, 1314, 3981
ZraI GACGTC 1 cut(s) 671
Zsp2I ATGCAT 1 cut(s) 1493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.