FvH4_6g23961

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000094
Physical Location & Seq
Forward (+)
18016081 .. 18018537
2457 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23961.t1

Sequence Viewer

Length: 2334 bp
ATGGGAGTTGTGGGATTAGAAGATATTCCTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGAGATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCTATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAATTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCGTGGGGTGCTCCGGTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGGAAGTTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCTAAGATTGATTTGAGATCGGGTTATCATCAGTTGCGGATCCGAGAGGGGGACATAGCCAAGACTGCTTTTCGGTCACGATATGGTCATTATGAGTTTGTGGTGATGCCATTTGGACTTACTAATGCACCCGCGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATACCTTGATCGTTTCGTGATCGTATTCATAGATGACATATTGGTTTACTTAAGAAGTGAGAAGGAGCATGCCAAGCATCTAAGAATAATATTGCGGACTTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTAGATAAAGTAGGGTTTTTGGGTCATGTGATTTCGACAGAAGGAGTTAGTGTGGATCCCCAAAAGGTGGAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGACGGAGATTCGTAGTTTCTTGGGATTAGCAGGTTATTATCGGCGCTTTGTAAAAGATTTTTCAAAGATTGCTGCTCCTCTCACAATGTTGACCAGGAAGGGGGTTAAGTTTGAATGGTCAGATCAGTGCGAGCAAAGCTTTCAAGAATTGAAGAATTTCTTGACAAGTGCTCCTGTTTTGGCACTTCCGGATGAGAGTGGAGAATATGTGGTCTATTGTGATGCTTCTAGACAGGGTCTAGGTGGAGTTTTGATGCAGCATGATCGAGTTATTGCCTACGCTTCTAGGCAATTGAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCGGTAGTTTTTGCTCTCAAGTTGTGGAGACACTATCTTTATGGAGCCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGTCGAAATCCCTCCATATCTTTATCTCATATAAAGATGGTTCGAGTTCCGCTTCTTTGTGAGTTGCGAGCTACAGGAGTGGATTTATCAGTGGATGAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGAGAAGCACAGTCTAATGATCATTCCATAGTTCGATTGATGGAAAGAGCTTCGAATGGAGCCGCAGCCGATCATTTTTCAGTTAGAAGAGATAGGACTCTATTATTTAAGAACCGGCTATGTGTTCCAAAAAGAAATGAAGAGTTGAAGAGTGAGATTATGGAGGAAGCTCATAGCTCTGCATATGCTGCTCATCCGGGTAGCACAAAAATGTATCGGATTTTGAAGGATTATTATTGGTGGCCAAACATGAAGAGGGAAATTGCAGCTTATGTGAGTAGATGTCTGATTTGTCAGCAAGTCAAGGCTGAAAGGCAGAAGCCTTCTAGGTTGCTTGAGCTGTTGCCTATTCCAGTGTGGAAGTGGGACCACATCACCATGGATTTTGTTTTTAGTTTACCTCGTACCCGTGAAGGGCATGACGGTATTTGGGTGATTGTGGATAGACTCACCAAGTCTGCACATTTCTTGCCAGTGGGAAAGAAGTATAAATTTGATAAATTGGCGGAGCTTTATGTGAATGAAATTATGAGGCTTCATGGTGTTCCTGAATCAATAGTGTCAGATCGGGATCCTCGTTTTGCTTCTAAATTCTGGGGAGCTCTTCAGGCAGCTTTAGGTACCCAATTACTCTTCAGTACTGCTTTTCATCCTCAGACTGATGGGCAGTCCGAGAGGACTATTCAGACTTTGGAGGATATGTTGAGGGCTTGTGCCATGCAGTTCAGAGGGAGTTGGGATAAAAATCTATCTTTGATGGAATTTGCCTATAATAATAGCTTTCATTCTAGCATTGGTATGGCTCCCTTTGAGGCTCTTTATGGGAGGCAGTGTCGCACGCCTTTGTGTTGGAATGAAGTAGGGGAAAAAGAGCTTTGTGGCCCAGAGTTAATCCATGTTACGAATGAGAAGATTAAAGTGGTTAGAGATAGACTCAAGACTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

778

Amino Acids

89.22

Weight (kDa)

9.08

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 87 - 247 1.4e-35 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 310 - 404 5.8e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 337 - 412 1e-25 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 508 - 565 1.9e-20 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 833
Acc65I GGTACC 1 cut(s) 2006
AccB1I GGYRCC 4 cut(s) 142, 275, 377, 2006
AccB7I CCANNNNNTGG 1 cut(s) 775
AccII CGCG 1 cut(s) 524
AccIII TCCGGA 2 cut(s) 46, 1000
AclWI GGATC 8 cut(s) 356, 424, 437, 543, 758, 771, 1952, 1965
AcoI YGGCCR 1 cut(s) 1628
AcsI RAATTY 4 cut(s) 967, 1877, 1976, 2147
AcuI CTGAAG 2 cut(s) 1976, 2005
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 3 cut(s) 1792, 2008, 2026
AfiI CCNNNNNNNGG 5 cut(s) 439, 775, 912, 1118, 1800
AflII CTTAAG 1 cut(s) 610
AjnI CCWGG 2 cut(s) 70, 905
AleI CACNNNNGTG 1 cut(s) 809
Alw21I GWGCWC 3 cut(s) 247, 985, 1990
Alw26I GTCTC 3 cut(s) 237, 277, 1174
AlwI GGATC 8 cut(s) 356, 424, 437, 543, 758, 771, 1952, 1965
Aor13HI TCCGGA 2 cut(s) 46, 1000
AoxI GGCC 4 cut(s) 221, 1364, 1628, 2266
ApeKI GCWGC 7 cut(s) 884, 1069, 1151, 1451, 1574, 1652, 1997
ApoI RAATTY 4 cut(s) 967, 1877, 1976, 2147
Asp700I GAANNNNTTC 3 cut(s) 24, 114, 968
Asp718I GGTACC 1 cut(s) 2006
AspLEI GCGC 2 cut(s) 145, 858
AspS9I GGNCC 2 cut(s) 1753, 2267
AsuC2I CCSGG 2 cut(s) 120, 1584
AsuHPI GGTGA 4 cut(s) 505, 1753, 1828, 1831
AsuII TTCGAA 1 cut(s) 1439
AvaII GGWCC 1 cut(s) 1753
AxyI CCTNAGG 1 cut(s) 60
BalI TGGCCA 1 cut(s) 1630
BamHI GGATCC 3 cut(s) 429, 763, 1957
BanI GGYRCC 4 cut(s) 142, 275, 377, 2006
BanII GRGCYC 1 cut(s) 1990
BbsI GAAGAC 3 cut(s) 188, 805, 1223
Bbv12I GWGCWC 3 cut(s) 247, 985, 1990
BbvI GCAGC 7 cut(s) 871, 1081, 1163, 1463, 1561, 1664, 2009
BccI CCATC 5 cut(s) 266, 1264, 1420, 2042, 2137
BcgI CGANNNNNNTGC 2 cut(s) 1058, 1092
BciT130I CCWGG 2 cut(s) 72, 907
BclI TGATCA 2 cut(s) 364, 1405
BcnI CCSGG 2 cut(s) 120, 1584
BcoDI GTCTC 3 cut(s) 237, 277, 1174
BfaI CTAG 7 cut(s) 225, 710, 1041, 1052, 1098, 1713, 2175
BfmI CTRYAG 3 cut(s) 30, 105, 1305
BfoI RGCGCY 2 cut(s) 146, 859
BfrI CTTAAG 1 cut(s) 610
BfuAI ACCTGC 1 cut(s) 833
BmcAI AGTACT 1 cut(s) 2026
Bme1390I CCNGG 4 cut(s) 72, 120, 907, 1584
Bme18I GGWCC 1 cut(s) 1753
BmgT120I GGNCC 2 cut(s) 1753, 2267
BmrFI CCNGG 4 cut(s) 72, 120, 907, 1584
BmsI GCATC 4 cut(s) 486, 646, 1024, 1056
BpiI GAAGAC 3 cut(s) 188, 805, 1223
BplI GAGNNNNNCTC 1 cut(s) 2304
BpmI CTGGAG 2 cut(s) 144, 1163
Bpu14I TTCGAA 1 cut(s) 1439
BpuEI CTTGAG 3 cut(s) 1154, 1742, 2306
BpuMI CCSGG 2 cut(s) 120, 1584
Bsa29I ATCGAT 1 cut(s) 351
BsaBI GATNNNNATC 2 cut(s) 1956, 2130
BsaHI GRCGYC 1 cut(s) 143
BsaJI CCNNGG 4 cut(s) 236, 344, 522, 1764
BsaWI WCCGGW 3 cut(s) 46, 247, 1000
Bsc4I CCNNNNNNNGG 5 cut(s) 439, 775, 912, 1118, 1800
Bse118I RCCGGY 1 cut(s) 1500
Bse1I ACTGG 4 cut(s) 1350, 1367, 1739, 1859
Bse21I CCTNAGG 1 cut(s) 60
Bse8I GATNNNNATC 2 cut(s) 1956, 2130
BseAI TCCGGA 2 cut(s) 46, 1000
BseBI CCWGG 2 cut(s) 72, 907
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 4 cut(s) 236, 344, 522, 1764
BseGI GGATG 5 cut(s) 55, 1009, 1333, 1579, 2035
BseJI GATNNNNATC 2 cut(s) 1956, 2130
BseLI CCNNNNNNNGG 5 cut(s) 439, 775, 912, 1118, 1800
BseMII CTCAG 3 cut(s) 51, 152, 2054
BseNI ACTGG 4 cut(s) 1350, 1367, 1739, 1859
BseRI GAGGAG 2 cut(s) 77, 879
BseXI GCAGC 7 cut(s) 871, 1081, 1163, 1463, 1561, 1664, 2009
BsgI GTGCAG 1 cut(s) 1830
Bsh1236I CGCG 1 cut(s) 524
BshFI GGCC 4 cut(s) 223, 1366, 1630, 2268
BshNI GGYRCC 4 cut(s) 142, 275, 377, 2006
BshVI ATCGAT 1 cut(s) 351
BsiHKAI GWGCWC 3 cut(s) 247, 985, 1990
BsiSI CCGG 6 cut(s) 47, 120, 248, 1001, 1501, 1583
BslFI GGGAC 2 cut(s) 455, 1766
BslI CCNNNNNNNGG 5 cut(s) 439, 775, 912, 1118, 1800
BsmAI GTCTC 3 cut(s) 237, 277, 1174
BsmFI GGGAC 2 cut(s) 455, 1766
BsnI GGCC 4 cut(s) 223, 1366, 1630, 2268
Bsp119I TTCGAA 1 cut(s) 1439
Bsp1286I GDGCHC 3 cut(s) 247, 985, 1990
Bsp13I TCCGGA 2 cut(s) 46, 1000
Bsp19I CCATGG 1 cut(s) 1764
BspANI GGCC 4 cut(s) 223, 1366, 1630, 2268
BspCNI CTCAG 3 cut(s) 52, 151, 2053
BspDI ATCGAT 1 cut(s) 351
BspEI TCCGGA 2 cut(s) 46, 1000
BspFNI CGCG 1 cut(s) 524
BspHI TCATGA 2 cut(s) 540, 1135
BspMI ACCTGC 1 cut(s) 833
BspPI GGATC 8 cut(s) 356, 424, 437, 543, 758, 771, 1952, 1965
BspQI GCTCTTC 1 cut(s) 1995
BspT104I TTCGAA 1 cut(s) 1439
BspT107I GGYRCC 4 cut(s) 142, 275, 377, 2006
BspTI CTTAAG 1 cut(s) 610
BsrFI RCCGGY 1 cut(s) 1500
BsrI ACTGG 4 cut(s) 1350, 1367, 1739, 1859
BssAI RCCGGY 1 cut(s) 1500
BssECI CCNNGG 4 cut(s) 236, 344, 522, 1764
BssNI GRCGYC 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 1764
Bst2UI CCWGG 2 cut(s) 72, 907
Bst4CI ACNGT 4 cut(s) 322, 811, 1398, 1811
Bst6I CTCTTC 6 cut(s) 1468, 1521, 1529, 1634, 1995, 2024
BstACI GRCGYC 1 cut(s) 143
BstAFI CTTAAG 1 cut(s) 610
BstAPI GCANNNNNTGC 1 cut(s) 1574
BstBI TTCGAA 1 cut(s) 1439
BstC8I GCNNGC 5 cut(s) 630, 944, 1149, 1302, 2225
BstDEI CTNAG 7 cut(s) 60, 138, 393, 641, 684, 2040, 2331
BstDSI CCRYGG 3 cut(s) 236, 522, 1764
BstF5I GGATG 5 cut(s) 55, 1009, 1333, 1579, 2035
BstFNI CGCG 1 cut(s) 524
BstH2I RGCGCY 2 cut(s) 146, 859
BstHHI GCGC 2 cut(s) 145, 858
BstMAI GTCTC 3 cut(s) 237, 277, 1174
BstMWI GCNNNNNNNGC 9 cut(s) 76, 455, 524, 634, 948, 1108, 1346, 1574, 1994
BstNI CCWGG 2 cut(s) 72, 907
BstNSI RCATGY 2 cut(s) 232, 632
BstSCI CCNGG 4 cut(s) 70, 118, 905, 1582
BstSFI CTRYAG 3 cut(s) 30, 105, 1305
BstUI CGCG 1 cut(s) 524
BstV1I GCAGC 7 cut(s) 871, 1081, 1163, 1463, 1561, 1664, 2009
BstV2I GAAGAC 3 cut(s) 188, 805, 1223
BstX2I RGATCY 4 cut(s) 429, 535, 763, 1957
BstYI RGATCY 4 cut(s) 429, 535, 763, 1957
Bsu15I ATCGAT 1 cut(s) 351
Bsu36I CCTNAGG 1 cut(s) 60
BsuRI GGCC 4 cut(s) 223, 1366, 1630, 2268
BsuTUI ATCGAT 1 cut(s) 351
BtgI CCRYGG 3 cut(s) 236, 522, 1764
BtsCI GGATG 5 cut(s) 55, 1009, 1333, 1579, 2035
BtsI GCAGTG 2 cut(s) 789, 2222
BtsIMutI CAGTG 8 cut(s) 327, 789, 807, 944, 1329, 1746, 1866, 2222
BveI ACCTGC 1 cut(s) 833
Cac8I GCNNGC 5 cut(s) 630, 944, 1149, 1302, 2225
CciI TCATGA 2 cut(s) 540, 1135
CfoI GCGC 2 cut(s) 145, 858
Cfr10I RCCGGY 1 cut(s) 1500
Cfr13I GGNCC 2 cut(s) 1753, 2267
Cfr42I CCGCGG 1 cut(s) 525
ClaI ATCGAT 1 cut(s) 351
Csp6I GTAC 3 cut(s) 1791, 2007, 2025
CviQI GTAC 3 cut(s) 1791, 2007, 2025
DdeI CTNAG 7 cut(s) 60, 138, 393, 641, 684, 2040, 2331
DinI GGCGCC 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 1628
Eam1104I CTCTTC 6 cut(s) 1468, 1521, 1529, 1634, 1995, 2024
EarI CTCTTC 6 cut(s) 1468, 1521, 1529, 1634, 1995, 2024
EciI GGCGGA 1 cut(s) 1907
Ecl136II GAGCTC 1 cut(s) 1988
Eco130I CCWWGG 1 cut(s) 1764
Eco24I GRGCYC 1 cut(s) 1990
Eco47I GGWCC 1 cut(s) 1753
Eco53kI GAGCTC 1 cut(s) 1988
Eco57I CTGAAG 2 cut(s) 1976, 2005
Eco81I CCTNAGG 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 1988
EcoRII CCWGG 2 cut(s) 70, 905
EcoT14I CCWWGG 1 cut(s) 1764
EcoT22I ATGCAT 1 cut(s) 293
EcoT38I GRGCYC 1 cut(s) 1990
EgeI GGCGCC 1 cut(s) 144
EheI GGCGCC 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 1764
FalI AAGNNNNNCTT 2 cut(s) 956, 988
FaqI GGGAC 2 cut(s) 455, 1766
FauI CCCGC 1 cut(s) 529
FauNDI CATATG 1 cut(s) 1570
FbaI TGATCA 2 cut(s) 364, 1405
FokI GGATG 5 cut(s) 62, 1016, 1340, 1566, 2022
FriOI GRGCYC 1 cut(s) 1990
FspBI CTAG 7 cut(s) 225, 710, 1041, 1052, 1098, 1713, 2175
GlaI GCGC 2 cut(s) 144, 857
GsuI CTGGAG 2 cut(s) 144, 1163
HaeII RGCGCY 2 cut(s) 146, 859
HaeIII GGCC 4 cut(s) 223, 1366, 1630, 2268
HapII CCGG 6 cut(s) 47, 120, 248, 1001, 1501, 1583
HhaI GCGC 2 cut(s) 145, 858
Hin1I GRCGYC 1 cut(s) 143
Hin6I GCGC 2 cut(s) 143, 856
HinP1I GCGC 2 cut(s) 143, 856
HincII GTYRAC 1 cut(s) 903
HindII GTYRAC 1 cut(s) 903
HindIII AAGCTT 1 cut(s) 949
HinfI GANTC 8 cut(s) 184, 310, 820, 1228, 1483, 1833, 1937, 2319
HpaII CCGG 6 cut(s) 47, 120, 248, 1001, 1501, 1583
HphI GGTGA 4 cut(s) 505, 1753, 1828, 1831
Hpy166II GTNNAC 3 cut(s) 607, 903, 1784
Hpy8I GTNNAC 3 cut(s) 607, 903, 1784
Hpy99I CGWCG 1 cut(s) 1239
HpyAV CCTTC 6 cut(s) 616, 743, 904, 1606, 1719, 1793
HpyCH4III ACNGT 4 cut(s) 322, 811, 1398, 1811
HpyF10VI GCNNNNNNNGC 9 cut(s) 76, 455, 524, 634, 948, 1108, 1346, 1574, 1994
HpyF3I CTNAG 7 cut(s) 60, 138, 393, 641, 684, 2040, 2331
Hsp92I GRCGYC 1 cut(s) 143
HspAI GCGC 2 cut(s) 143, 856
KasI GGCGCC 1 cut(s) 142
Kpn2I TCCGGA 2 cut(s) 46, 1000
KpnI GGTACC 1 cut(s) 2010
Ksp22I TGATCA 2 cut(s) 364, 1405
KspI CCGCGG 1 cut(s) 525
LguI GCTCTTC 1 cut(s) 1995
Lsp1109I GCAGC 7 cut(s) 871, 1081, 1163, 1463, 1561, 1664, 2009
LweI GCATC 4 cut(s) 486, 646, 1024, 1056
MaeI CTAG 7 cut(s) 225, 710, 1041, 1052, 1098, 1713, 2175
MaeIII GTNAC 4 cut(s) 316, 465, 811, 2284
MfeI CAATTG 2 cut(s) 188, 1103
MflI RGATCY 4 cut(s) 429, 535, 763, 1957
MhlI GDGCHC 3 cut(s) 247, 985, 1990
MlsI TGGCCA 1 cut(s) 1630
MluNI TGGCCA 1 cut(s) 1630
Mly113I GGCGCC 1 cut(s) 143
MlyI GAGTC 5 cut(s) 178, 1237, 1477, 1827, 2313
MmeI TCCRAC 1 cut(s) 2216
Mox20I TGGCCA 1 cut(s) 1630
Mph1103I ATGCAT 1 cut(s) 293
MroI TCCGGA 2 cut(s) 46, 1000
MroXI GAANNNNTTC 3 cut(s) 24, 114, 968
MscI TGGCCA 1 cut(s) 1630
MseI TTAA 6 cut(s) 261, 611, 918, 1494, 2276, 2301
MslI CAYNNNNRTG 4 cut(s) 809, 1595, 1763, 2183
Msp20I TGGCCA 1 cut(s) 1630
MspA1I CMGCKG 3 cut(s) 164, 524, 1154
MspCI CTTAAG 1 cut(s) 610
MspI CCGG 6 cut(s) 47, 120, 248, 1001, 1501, 1583
MspR9I CCNGG 4 cut(s) 72, 120, 907, 1584
MunI CAATTG 2 cut(s) 188, 1103
MvaI CCWGG 2 cut(s) 72, 907
MvnI CGCG 1 cut(s) 524
MwoI GCNNNNNNNGC 9 cut(s) 76, 455, 524, 634, 948, 1108, 1346, 1574, 1994
NarI GGCGCC 1 cut(s) 143
NciI CCSGG 2 cut(s) 120, 1584
NcoI CCATGG 1 cut(s) 1764
NdeI CATATG 1 cut(s) 1570
NmuCI GTSAC 3 cut(s) 316, 465, 811
NsiI ATGCAT 1 cut(s) 293
NspI RCATGY 2 cut(s) 232, 632
NspV TTCGAA 1 cut(s) 1439
OliI CACNNNNGTG 1 cut(s) 809
PaeI GCATGC 1 cut(s) 632
PagI TCATGA 2 cut(s) 540, 1135
PciSI GCTCTTC 1 cut(s) 1995
PcsI WCGNNNNNNNCGW 1 cut(s) 1960
PdmI GAANNNNTTC 3 cut(s) 24, 114, 968
PfeI GAWTC 3 cut(s) 310, 820, 1937
PflFI GACNNNGTC 1 cut(s) 1047
PflMI CCANNNNNTGG 1 cut(s) 775
PfoI TCCNGGA 1 cut(s) 118
PleI GAGTC 5 cut(s) 178, 1236, 1477, 1827, 2313
PluTI GGCGCC 1 cut(s) 146
PpsI GAGTC 5 cut(s) 178, 1236, 1477, 1827, 2313
Psp124BI GAGCTC 1 cut(s) 1990
Psp6I CCWGG 2 cut(s) 70, 905
PspGI CCWGG 2 cut(s) 70, 905
PspPI GGNCC 2 cut(s) 1753, 2267
PsuI RGATCY 4 cut(s) 429, 535, 763, 1957
PsyI GACNNNGTC 1 cut(s) 1047
RsaI GTAC 3 cut(s) 1792, 2008, 2026
RsaNI GTAC 3 cut(s) 1791, 2007, 2025
RseI CAYNNNNRTG 4 cut(s) 809, 1595, 1763, 2183
SacI GAGCTC 1 cut(s) 1990
SacII CCGCGG 1 cut(s) 525
SapI GCTCTTC 1 cut(s) 1995
SaqAI TTAA 6 cut(s) 261, 611, 918, 1494, 2276, 2301
Sau96I GGNCC 2 cut(s) 1753, 2267
ScaI AGTACT 1 cut(s) 2026
SchI GAGTC 5 cut(s) 178, 1237, 1477, 1827, 2313
ScrFI CCNGG 4 cut(s) 72, 120, 907, 1584
SduI GDGCHC 3 cut(s) 247, 985, 1990
SfaNI GCATC 4 cut(s) 486, 646, 1024, 1056
SfcI CTRYAG 3 cut(s) 30, 105, 1305
SfoI GGCGCC 1 cut(s) 144
Sfr303I CCGCGG 1 cut(s) 525
SfuI TTCGAA 1 cut(s) 1439
SgrBI CCGCGG 1 cut(s) 525
SinI GGWCC 1 cut(s) 1753
SmiMI CAYNNNNRTG 4 cut(s) 809, 1595, 1763, 2183
SmlI CTYRAG 4 cut(s) 610, 1169, 1721, 2321
SmoI CTYRAG 4 cut(s) 610, 1169, 1721, 2321
SphI GCATGC 1 cut(s) 632
SspDI GGCGCC 1 cut(s) 142
SspI AATATT 1 cut(s) 651
SspMI CTAG 7 cut(s) 225, 710, 1041, 1052, 1098, 1713, 2175
SstI GAGCTC 1 cut(s) 1990
StyD4I CCNGG 4 cut(s) 70, 118, 905, 1582
StyI CCWWGG 1 cut(s) 1764
TaaI ACNGT 4 cut(s) 322, 811, 1398, 1811
TaqI TCGA 8 cut(s) 351, 743, 788, 1078, 1237, 1276, 1420, 1439
TaqII GACCGA 1 cut(s) 453
TatI WGTACW 1 cut(s) 2024
TauI GCSGC 3 cut(s) 527, 1114, 1451
TfiI GAWTC 3 cut(s) 310, 820, 1937
Tru1I TTAA 6 cut(s) 261, 611, 918, 1494, 2276, 2301
Tru9I TTAA 6 cut(s) 261, 611, 918, 1494, 2276, 2301
TscAI CASTG 8 cut(s) 327, 789, 814, 944, 1329, 1746, 1866, 2222
TseFI GTSAC 3 cut(s) 316, 465, 811
TseI GCWGC 7 cut(s) 884, 1069, 1151, 1451, 1574, 1652, 1997
Tsp45I GTSAC 3 cut(s) 316, 465, 811
TspGWI ACGGA 3 cut(s) 225, 327, 830
TspRI CASTG 8 cut(s) 327, 789, 814, 944, 1329, 1746, 1866, 2222
Tth111I GACNNNGTC 1 cut(s) 1047
Van91I CCANNNNNTGG 1 cut(s) 775
Vha464I CTTAAG 1 cut(s) 610
VpaK11BI GGWCC 1 cut(s) 1753
XapI RAATTY 4 cut(s) 967, 1877, 1976, 2147
XbaI TCTAGA 1 cut(s) 1040
XceI RCATGY 2 cut(s) 232, 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 1746
XmnI GAANNNNTTC 3 cut(s) 24, 114, 968
XspI CTAG 7 cut(s) 225, 710, 1041, 1052, 1098, 1713, 2175
ZrmI AGTACT 1 cut(s) 2026
Zsp2I ATGCAT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.