transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 1 - 81 | 9.1e-19 | Reverse transcriptase (RNA-dependent DNA polymerase) |
| RT_RNaseH_2 | PF17919 | 145 - 184 | 4.2e-10 | RNase H-like domain found in reverse transcriptase |
| RT_RNaseH | PF17917 | 184 - 233 | 7.3e-13 | RNase H-like domain found in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 699 |
| AatII | GACGTC | 1 cut(s) | 478 |
| AciI | CCGC | 1 cut(s) | 516 |
| AclWI | GGATC | 2 cut(s) | 263, 276 |
| AcsI | RAATTY | 1 cut(s) | 658 |
| AcuI | CTGAAG | 3 cut(s) | 43, 273, 587 |
| AcyI | GRCGYC | 1 cut(s) | 475 |
| AdeI | CACNNNGTG | 1 cut(s) | 201 |
| AfaI | GTAC | 1 cut(s) | 590 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 343 |
| AflIII | ACRYGT | 1 cut(s) | 238 |
| AgeI | ACCGGT | 1 cut(s) | 75 |
| AgsI | TTSAA | 2 cut(s) | 527, 658 |
| AluBI | AGCT | 5 cut(s) | 181, 228, 466, 488, 685 |
| AluI | AGCT | 5 cut(s) | 181, 228, 466, 488, 685 |
| Alw21I | GWGCWC | 2 cut(s) | 135, 687 |
| Alw26I | GTCTC | 2 cut(s) | 482, 571 |
| AlwI | GGATC | 2 cut(s) | 263, 276 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 466 |
| ApeKI | GCWGC | 2 cut(s) | 29, 178 |
| ApoI | RAATTY | 1 cut(s) | 658 |
| AsiGI | ACCGGT | 1 cut(s) | 75 |
| AspA2I | CCTAGG | 1 cut(s) | 337 |
| AspS9I | GGNCC | 1 cut(s) | 73 |
| AsuHPI | GGTGA | 3 cut(s) | 187, 337, 605 |
| AvaII | GGWCC | 1 cut(s) | 73 |
| AvrII | CCTAGG | 1 cut(s) | 337 |
| BamHI | GGATCC | 1 cut(s) | 268 |
| BanII | GRGCYC | 1 cut(s) | 687 |
| BbsI | GAAGAC | 1 cut(s) | 49 |
| Bbv12I | GWGCWC | 2 cut(s) | 135, 687 |
| BbvI | GCAGC | 2 cut(s) | 41, 190 |
| BccI | CCATC | 1 cut(s) | 673 |
| BclI | TGATCA | 1 cut(s) | 616 |
| BcoDI | GTCTC | 2 cut(s) | 482, 571 |
| BfaI | CTAG | 1 cut(s) | 338 |
| BfmI | CTRYAG | 1 cut(s) | 27 |
| BglII | AGATCT | 1 cut(s) | 570 |
| BisI | GCNGC | 3 cut(s) | 30, 179, 517 |
| BlnI | CCTAGG | 1 cut(s) | 337 |
| BlsI | GCNGC | 3 cut(s) | 31, 180, 518 |
| Bme18I | GGWCC | 1 cut(s) | 73 |
| BmgT120I | GGNCC | 1 cut(s) | 73 |
| BmiI | GGNNCC | 1 cut(s) | 270 |
| BmsI | GCATC | 3 cut(s) | 529, 551, 615 |
| BpiI | GAAGAC | 1 cut(s) | 49 |
| BpmI | CTGGAG | 1 cut(s) | 595 |
| BpuEI | CTTGAG | 2 cut(s) | 468, 614 |
| Bsa29I | ATCGAT | 1 cut(s) | 96 |
| BsaHI | GRCGYC | 1 cut(s) | 475 |
| BsaJI | CCNNGG | 1 cut(s) | 337 |
| BsaWI | WCCGGW | 1 cut(s) | 75 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 7, 37, 410, 440, 472, 502 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 343 |
| Bse118I | RCCGGY | 1 cut(s) | 75 |
| BseCI | ATCGAT | 1 cut(s) | 96 |
| BseDI | CCNNGG | 1 cut(s) | 337 |
| BseGI | GGATG | 3 cut(s) | 442, 544, 684 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 343 |
| BseMII | CTCAG | 2 cut(s) | 287, 393 |
| BseRI | GAGGAG | 1 cut(s) | 343 |
| BseXI | GCAGC | 2 cut(s) | 41, 190 |
| BsgI | GTGCAG | 1 cut(s) | 389 |
| BshTI | ACCGGT | 1 cut(s) | 75 |
| BshVI | ATCGAT | 1 cut(s) | 96 |
| BsiHKAI | GWGCWC | 2 cut(s) | 135, 687 |
| BsiSI | CCGG | 1 cut(s) | 76 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 343 |
| BsmAI | GTCTC | 2 cut(s) | 482, 571 |
| BsmBI | CGTCTC | 1 cut(s) | 482 |
| BsmI | GAATGC | 1 cut(s) | 25 |
| Bsp1286I | GDGCHC | 2 cut(s) | 135, 687 |
| Bsp143I | GATC | 4 cut(s) | 222, 268, 570, 616 |
| BspACI | CCGC | 1 cut(s) | 516 |
| BspCNI | CTCAG | 2 cut(s) | 286, 392 |
| BspDI | ATCGAT | 1 cut(s) | 96 |
| BspLI | GGNNCC | 1 cut(s) | 270 |
| BspMAI | CTGCAG | 1 cut(s) | 31 |
| BspPI | GGATC | 2 cut(s) | 263, 276 |
| BsrFI | RCCGGY | 1 cut(s) | 75 |
| BssAI | RCCGGY | 1 cut(s) | 75 |
| BssECI | CCNNGG | 1 cut(s) | 337 |
| BssMI | GATC | 4 cut(s) | 222, 268, 570, 616 |
| BssNI | GRCGYC | 1 cut(s) | 475 |
| BssT1I | CCWWGG | 1 cut(s) | 337 |
| Bst4CI | ACNGT | 1 cut(s) | 593 |
| BstACI | GRCGYC | 1 cut(s) | 475 |
| BstC8I | GCNNGC | 1 cut(s) | 349 |
| BstDEI | CTNAG | 3 cut(s) | 189, 273, 379 |
| BstF5I | GGATG | 3 cut(s) | 442, 544, 684 |
| BstKTI | GATC | 4 cut(s) | 225, 271, 573, 619 |
| BstMAI | GTCTC | 2 cut(s) | 482, 571 |
| BstMBI | GATC | 4 cut(s) | 222, 268, 570, 616 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 29 |
| BstNSI | RCATGY | 1 cut(s) | 242 |
| BstSFI | CTRYAG | 1 cut(s) | 27 |
| BstV1I | GCAGC | 2 cut(s) | 41, 190 |
| BstV2I | GAAGAC | 1 cut(s) | 49 |
| BstX2I | RGATCY | 2 cut(s) | 268, 570 |
| BstYI | RGATCY | 2 cut(s) | 268, 570 |
| Bsu15I | ATCGAT | 1 cut(s) | 96 |
| BsuTUI | ATCGAT | 1 cut(s) | 96 |
| BtsCI | GGATG | 3 cut(s) | 442, 544, 684 |
| BtsIMutI | CAGTG | 1 cut(s) | 697 |
| Cac8I | GCNNGC | 1 cut(s) | 349 |
| CaiI | CAGNNNCTG | 1 cut(s) | 466 |
| Cfr10I | RCCGGY | 1 cut(s) | 75 |
| Cfr13I | GGNCC | 1 cut(s) | 73 |
| ClaI | ATCGAT | 1 cut(s) | 96 |
| Csp6I | GTAC | 1 cut(s) | 589 |
| CspAI | ACCGGT | 1 cut(s) | 75 |
| CviAII | CATG | 3 cut(s) | 37, 239, 297 |
| CviJI | RGCY | 9 cut(s) | 181, 214, 228, 347, 351, 466, 488, 627, 685 |
| CviKI_1 | RGCY | 9 cut(s) | 181, 214, 228, 347, 351, 466, 488, 627, 685 |
| CviQI | GTAC | 1 cut(s) | 589 |
| DdeI | CTNAG | 3 cut(s) | 189, 273, 379 |
| DpnI | GATC | 4 cut(s) | 224, 270, 572, 618 |
| DpnII | GATC | 4 cut(s) | 222, 268, 570, 616 |
| DraIII | CACNNNGTG | 1 cut(s) | 201 |
| Ecl136II | GAGCTC | 1 cut(s) | 685 |
| Eco130I | CCWWGG | 1 cut(s) | 337 |
| Eco24I | GRGCYC | 1 cut(s) | 687 |
| Eco47I | GGWCC | 1 cut(s) | 73 |
| Eco53kI | GAGCTC | 1 cut(s) | 685 |
| Eco57I | CTGAAG | 3 cut(s) | 43, 273, 587 |
| EcoICRI | GAGCTC | 1 cut(s) | 685 |
| EcoT14I | CCWWGG | 1 cut(s) | 337 |
| EcoT22I | ATGCAT | 1 cut(s) | 544 |
| EcoT38I | GRGCYC | 1 cut(s) | 687 |
| ErhI | CCWWGG | 1 cut(s) | 337 |
| Esp3I | CGTCTC | 1 cut(s) | 482 |
| FaeI | CATG | 3 cut(s) | 40, 242, 300 |
| FaiI | YATR | 8 cut(s) | 38, 67, 186, 240, 298, 621, 636, 699 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 623, 655 |
| FatI | CATG | 3 cut(s) | 36, 238, 296 |
| FbaI | TGATCA | 1 cut(s) | 616 |
| Fnu4HI | GCNGC | 3 cut(s) | 30, 179, 517 |
| FokI | GGATG | 3 cut(s) | 449, 551, 691 |
| FriOI | GRGCYC | 1 cut(s) | 687 |
| Fsp4HI | GCNGC | 3 cut(s) | 30, 179, 517 |
| FspBI | CTAG | 1 cut(s) | 338 |
| GluI | GCNGC | 3 cut(s) | 30, 179, 517 |
| GsuI | CTGGAG | 1 cut(s) | 595 |
| HapII | CCGG | 1 cut(s) | 76 |
| Hin1I | GRCGYC | 1 cut(s) | 475 |
| Hin1II | CATG | 3 cut(s) | 40, 242, 300 |
| HincII | GTYRAC | 2 cut(s) | 127, 408 |
| HindII | GTYRAC | 2 cut(s) | 127, 408 |
| HinfI | GANTC | 2 cut(s) | 54, 409 |
| HpaII | CCGG | 1 cut(s) | 76 |
| HphI | GGTGA | 3 cut(s) | 187, 337, 605 |
| Hpy166II | GTNNAC | 4 cut(s) | 127, 195, 408, 449 |
| Hpy188I | TCNGA | 6 cut(s) | 11, 62, 108, 236, 276, 567 |
| Hpy188III | TCNNGA | 4 cut(s) | 71, 461, 506, 574 |
| Hpy8I | GTNNAC | 4 cut(s) | 127, 195, 408, 449 |
| Hpy99I | CGWCG | 2 cut(s) | 363, 477 |
| HpyAV | CCTTC | 4 cut(s) | 248, 271, 512, 666 |
| HpyCH4III | ACNGT | 1 cut(s) | 593 |
| HpyCH4IV | ACGT | 2 cut(s) | 361, 475 |
| HpyCH4V | TGCA | 3 cut(s) | 29, 370, 542 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 29 |
| HpyF3I | CTNAG | 3 cut(s) | 189, 273, 379 |
| HpySE526I | ACGT | 2 cut(s) | 361, 475 |
| Hsp92I | GRCGYC | 1 cut(s) | 475 |
| Hsp92II | CATG | 3 cut(s) | 40, 242, 300 |
| Ksp22I | TGATCA | 1 cut(s) | 616 |
| Kzo9I | GATC | 4 cut(s) | 222, 268, 570, 616 |
| LmnI | GCTCC | 5 cut(s) | 28, 301, 463, 493, 682 |
| Lsp1109I | GCAGC | 2 cut(s) | 41, 190 |
| LweI | GCATC | 3 cut(s) | 529, 551, 615 |
| MaeI | CTAG | 1 cut(s) | 338 |
| MaeII | ACGT | 2 cut(s) | 361, 475 |
| MaeIII | GTNAC | 1 cut(s) | 316 |
| MalI | GATC | 4 cut(s) | 224, 270, 572, 618 |
| MboI | GATC | 4 cut(s) | 222, 268, 570, 616 |
| MboII | GAAGA | 4 cut(s) | 49, 452, 580, 601 |
| MfeI | CAATTG | 1 cut(s) | 384 |
| MflI | RGATCY | 2 cut(s) | 268, 570 |
| MhlI | GDGCHC | 2 cut(s) | 135, 687 |
| MluCI | AATT | 2 cut(s) | 384, 658 |
| MlyI | GAGTC | 2 cut(s) | 63, 403 |
| MnlI | CCTC | 6 cut(s) | 282, 316, 321, 412, 638, 657 |
| Mph1103I | ATGCAT | 1 cut(s) | 544 |
| MseI | TTAA | 3 cut(s) | 146, 216, 429 |
| MspA1I | CMGCKG | 1 cut(s) | 181 |
| MspI | CCGG | 1 cut(s) | 76 |
| MunI | CAATTG | 1 cut(s) | 384 |
| Mva1269I | GAATGC | 1 cut(s) | 25 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 29 |
| NdeII | GATC | 4 cut(s) | 222, 268, 570, 616 |
| NlaIII | CATG | 3 cut(s) | 40, 242, 300 |
| NlaIV | GGNNCC | 1 cut(s) | 270 |
| NsiI | ATGCAT | 1 cut(s) | 544 |
| NspI | RCATGY | 1 cut(s) | 242 |
| PciI | ACATGT | 1 cut(s) | 238 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 516 |
| PctI | GAATGC | 1 cut(s) | 25 |
| PinAI | ACCGGT | 1 cut(s) | 75 |
| PkrI | GCNGC | 3 cut(s) | 31, 180, 518 |
| PleI | GAGTC | 2 cut(s) | 62, 403 |
| PpsI | GAGTC | 2 cut(s) | 62, 403 |
| PscI | ACATGT | 1 cut(s) | 238 |
| PsiI | TTATAA | 1 cut(s) | 699 |
| Psp124BI | GAGCTC | 1 cut(s) | 687 |
| PspN4I | GGNNCC | 1 cut(s) | 270 |
| PspPI | GGNCC | 1 cut(s) | 73 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 176, 208 |
| PstI | CTGCAG | 1 cut(s) | 31 |
| PstNI | CAGNNNCTG | 1 cut(s) | 466 |
| PsuI | RGATCY | 2 cut(s) | 268, 570 |
| PvuII | CAGCTG | 1 cut(s) | 181 |
| RsaI | GTAC | 1 cut(s) | 590 |
| RsaNI | GTAC | 1 cut(s) | 589 |
| SacI | GAGCTC | 1 cut(s) | 687 |
| SaqAI | TTAA | 3 cut(s) | 146, 216, 429 |
| SatI | GCNGC | 3 cut(s) | 30, 179, 517 |
| Sau3AI | GATC | 4 cut(s) | 222, 268, 570, 616 |
| Sau96I | GGNCC | 1 cut(s) | 73 |
| SchI | GAGTC | 2 cut(s) | 63, 403 |
| SduI | GDGCHC | 2 cut(s) | 135, 687 |
| SfaNI | GCATC | 3 cut(s) | 529, 551, 615 |
| SfcI | CTRYAG | 1 cut(s) | 27 |
| SinI | GGWCC | 1 cut(s) | 73 |
| SmlI | CTYRAG | 2 cut(s) | 483, 629 |
| SmoI | CTYRAG | 2 cut(s) | 483, 629 |
| Sse9I | AATT | 2 cut(s) | 384, 658 |
| SsiI | CCGC | 1 cut(s) | 516 |
| SspMI | CTAG | 1 cut(s) | 338 |
| SstI | GAGCTC | 1 cut(s) | 687 |
| StyI | CCWWGG | 1 cut(s) | 337 |
| TaaI | ACNGT | 1 cut(s) | 593 |
| TaiI | ACGT | 2 cut(s) | 364, 478 |
| TaqI | TCGA | 3 cut(s) | 96, 412, 423 |
| TasI | AATT | 2 cut(s) | 384, 658 |
| TauI | GCSGC | 1 cut(s) | 519 |
| Tru1I | TTAA | 3 cut(s) | 146, 216, 429 |
| Tru9I | TTAA | 3 cut(s) | 146, 216, 429 |
| TscAI | CASTG | 1 cut(s) | 697 |
| TseI | GCWGC | 2 cut(s) | 29, 178 |
| TspDTI | ATGAA | 5 cut(s) | 25, 62, 82, 453, 601 |
| TspGWI | ACGGA | 2 cut(s) | 466, 551 |
| TspRI | CASTG | 1 cut(s) | 697 |
| VpaK11BI | GGWCC | 1 cut(s) | 73 |
| XapI | RAATTY | 1 cut(s) | 658 |
| XceI | RCATGY | 1 cut(s) | 242 |
| XmaJI | CCTAGG | 1 cut(s) | 337 |
| XspI | CTAG | 1 cut(s) | 338 |
| ZraI | GACGTC | 1 cut(s) | 476 |
| Zsp2I | ATGCAT | 1 cut(s) | 544 |