MD09G1067600.v1.1

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000094
Physical Location & Seq
Forward (+)
4593598 .. 4597800
4203 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1067600.v1.1.491

Sequence Viewer

Length: 4203 bp
ATGGAAGACTCTGATAATCTTCCGGACAGTGAGGATGAAGAGGATAAGGGTAATGGTCAGAAGAAAAATGAGAAAGGTAAAGGTGTTTCCATTCCAGGACCTCGTCAGATGCAGAATTTCAAGAAAAGTGGAATGAGTTCGAGTTCTTCCAGTGGTGGATTTAGTGCCACAGGTCCGAGGAGAGGAGGTGGTAGGTTTAGTAATGGACCTAGATTTTCTGGTCAGAGAGGCTTTGGTAATACTGGTAGTTCGGGTCCTCCGTTATGTCGCCGTTGTAATTTCCGACATCATGGGGAATGTAGGAGAAGCAGTGGTGCATGCTTTACATGTGGTCAGACAGGACATAGAGCTATGTATTGTCCCCAGAATCAGCAGAGGCCCCAGCAGCCTGTTATGCCAACATCAGCACCGACTCAACAGAACTTTAATTCAGGCAGTTATGGCCAGGGTGGTCGTGGTGGTGCTTATCACTATCAGGGTGATGCTGCTCCTTATGCTCCGGGACAGTATCACTATTCCCAGGATCCTTATTTTCAGAGTGGATATTCTCAGGATCAAGGAGGTTATACTTCATATCCGTCTATGCCAGCTAGCGGATCTCAGTGGTATCAGGGGGGTCAGCCCCAACAGAGCGGAGTTGCTGCTAGTAGTGCAGGGTCGTTTAGGCCGCCTGTCCAGGCAGGTCAAGGACGTACTCATCAGGGACGAGGTAACCAGAGTGGCAGAGGTCGTGGAGGACGACAGCCAGCTCAGGGACGTGTTAACCACATCTCGCTGCAAGATGCTCAGAACCATCCAGACTTGATTATGGGTACGTTGAATGTTCTTGGTCATTTTGCTAGAGTCTTGATTGATTGTGGTGCTACACACTCTGTGATTTCTCATACATTTGCTCAAATAACGCAACCTCATCCTTCACCTCTAGGGTTTGATTTAGAGTTTGCTATGCCTAGAGGGGATAAATGTTATGTTGATAGTTTTTACTCTGGGTGTCCAGTGATGGTAGATAATGTCATTATGCCTGCTAATCTTATCCCGTTAGACATCGTGGATTTTGATGTGATTTTAGGGGCGGATTGGTTGCATTATAATCGCGCCCATATAGATTGTTACGGGAAATCAGTTACTTTTCTTCGTCCTGGACTACCCGAGGTTACATTTGTGGGTGAAAGAAGTGGGGTGAGGCATGGTGTTATTTCAGCCATAAGAGCGAAGAAATTGTTATCCAAGGGTTGTCAGGGATACTTGGCACATGTGGTGTTAAATGATGTTGATTCCGGTAGTGTGGAGGAAGTCGGAGTAGTCAGACACTATCCTGATGTATTTCCAGATGATTTACCCGGGTTGCCTCCAGATAGAGATGTGGAATTTTCGATTGAATTGCTTCCAGGTACGAATCCTATCTCTTTGGCTCCTTATAGAATGGCACCAGCGGAATTAAGAGAGTTGAAAATTCAATTGCAAGAGTTAATTGATAAAGGTTTCATTCAGCCTAATTCTTCACCTTGGGGAGCTCCAGTGTTGTTTGTAAGAAAGAAAGATGGAACTTTGAGATTGTGCATTGATTACAGGCAATTGAATCGGGTGACGATTAAAAACCGTTATCCCTTGCCTCGTATAGATGATTTGTTTGATCAGCTCAAAGGTGCCTGTGTGTTTTCTAAGATCAATTTGAGGTCTGGGTATTATCAATTAAAGATTAAAGATGAGGATGTTCATAAAACAGCTTTCAGGACTCGTTATGGGCATTATGAGTTTTTGGTGATGCCATTTGGATTGACTAATGCTCCTGCAGCTTTCATGAGATTGATGAATGAAGTATTCCAGGAATATCTTGACAGGTTTGTCATTGTTTTTATTGATGATATCCTGGTATATTCTAAGTCGAAATCAGACCATATTCGACATCTTAACTTGGTGTTAAGGAAATTGAGGGAACACCGGTTATATGCCAAATTTAGTAAATGTCAGTTTTGGCTGGATCAAGTGGCATTTTTGGGACATGTGGTATCAGCTCAGGGAATTCAAGTGGATCCTCAAAAGATAGCAGCAGTGGAAAATTGGGAACAACCTCGAACGGTCACTGAGGTGCGGAGTTTTCTTGGTTTGGCAGGTTATTATAGACGGTTTGTTCAAGACTTTTCTATGATTGCCTTGCCATTAACGAAGTTAACCAGGAAGGATGTTAAGTTTGAGTGGGATGAAAGTTGTGAGCAAAGTTTCCAGCAGTTGAAGTATTGCCTTACTCATGCACCTGTGTTAGTACTTCCTGATGATAATGGTAACTTCGAGATCTATAGTGATGCTTCTTTGAATGGTTTGGGTTGTGTTTTGATGCAGCATAGTAGAGTGATTGCCTATGCTTCTAGGCAGTTGAAGACTCATGAAAGAAACTATCCGACTCACGATCTTGAGTTGGCAGCTATTGTGTTTGCTTTGAAGATTTGGAGACATTATCTCTATGGCGAGAAATGTAAGATCTTTACCGATCATAAAAGCCTTCAGTACCTTTTCACTCAGCATGATCTTAATCTTCGTCAGAGAAGATGGTTGGAATTGTTAAGTGATTATGATTGCACGATTGAGTACCATCCGGGTCGTGCAAATGTGGTGGCTGATGCTCTGAGTAGGAAGCCTCAAGGGCGACTTAATGCTTTGTATGCCAGTCGTGTTCCTCTTCTGGCAGAGTTGAGATCTACTGGAGTAGAGTTAGAATGGGAAGAGCAAAGTGAAGCTTTTCTTGCCAATTTTCAAGTCAAGCCAATTTTAATTGATCGGGTGCTTGCAGCTCAATCGTGGGATGAAGAAATTCAAGAATTGATCAATTTAAGAAATGAAGGGAAGAAGAAAGATCTCAAGATCCGAGGATCAGATGGTATGCTTATGCAAGAGAACAGGATGTATGTGCCTAATAATGAGGAACTGAAGAAGGAAATCTTGGATGAAGCACATTGTTCGGCTTATGCTATGCACCCAGGAGGAACTAAAATGTATCATACCATTCGACCATTCTACTATTGGCCGGGTATGAAGAGGGAGATTGCGGAGTATGTAAGTAAGTGTATTGTTTGCCAGCAGGTTAAGGCTGAAAGAAAGAAGCCGTTTGGGAGATTGCAACCACTTCCCGTTCCCCAGTGGAAATGGGAGAATATAACGATGGATTTTGTGTATAAGCTGCCACGTACACAAAATGGTTTTGATGGCATTTGGGTGGTTGTAGATCGACTTACCAAATCAGCACATTTTATTCCAGTAAGGGAGAAGTATTCTTTAAATAAGTTGGCTCAGTTATTCATATCGAAGGTTGTAAAGTATCATGGTGTTCCAGTGAATATTATTTCTGATCGAGATCCAAGATTTACTTCTAAGTTTTGGGTAGCTTTTCAAGAAGCTTTGGGTACTAGATTGCTTTACAGTACAGCTTATCATCCACAGACAGATGGTCAGTCGGAGAGAACTATTCAGACACTCGAGGATATGTTGAGATCCTCTGTGATGCAATTTGGTGATTCTTGGCATGATCGTTTGGATTTGATGGAGTTTGCCTACAATAATAGTTTTCATTCGAGTATTGGAATGTCTCCATTTGAAGCACTTTATGGTAAAGCTTGCCGTACGCCATTATGTTGGTCAGAGGTTGGTGAAAGAATACTTGAAGGGCCAGAGATTGTGGATGAGACTACTCAGAATATTCAGGTAATTAAATCTAACCTGAAAGTGGCCCAGGATAGACAAAAGAGCCTAGCGGATCGACATACCACGGACAGAATGTATAATGTGGGCGACTATGTTTTTCTCAAATTATCGCCTTGGAGAGGTGTGGTTCGCTTTGGGAAGAAAGGAAAGCTAAGTCCCAGGTACATTGGACCTTATGAGATCACTGAGAGGATTGGTGAAGTTGCTTACAGGTTGGAGCTACCTCCAGAGTTGTCTAAGGTACATAATGTGTTCCATGTCTCGATGCTTCGGCATTATGTTTCAGATCCTTCACATGTGATTCCTCCTCAACCATTGGAAATTAATCCGGATTTGACATATGATGAAGAACCAGTGACTATACTGGATTGGAAAGATAAGACCTTGAGGAATAAGACCGTGAGCTTAGTAAAAGTATTGTGGAGGAACCATTCAACGGAAGAAGCTACTTGGGAGACAGAAGATCGGATGAGAGATATGTATCCGAGATTATTCTATGAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

1401

Amino Acids

159.48

Weight (kDa)

8.61

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 251 - 378 1.5e-31 Retroviral aspartyl protease
RVT_1 PF00078 510 - 669 3.1e-38 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 733 - 827 8.5e-31 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 759 - 857 9.7e-34 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 972 - 1029 7.5e-19 Integrase zinc binding domain
SH3_Tf2-1 PF24626 1261 - 1326 1.2e-27 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1089
AasI GACNNNNNNGTC 1 cut(s) 1844
Acc36I ACCTGC 3 cut(s) 671, 2102, 3067
AccB1I GGYRCC 2 cut(s) 1426, 1646
AccBSI CCGCTC 1 cut(s) 633
AccII CGCG 1 cut(s) 1095
AccIII TCCGGA 2 cut(s) 22, 4024
AciI CCGC 8 cut(s) 594, 633, 668, 1073, 1433, 2092, 3044, 3746
AcoI YGGCCR 2 cut(s) 442, 3020
AcsI RAATTY 6 cut(s) 115, 1367, 1452, 1955, 2022, 2808
AcuI CTGAAG 2 cut(s) 2486, 2945
AdeI CACNNNGTG 1 cut(s) 874
AfiI CCNNNNNNNGG 6 cut(s) 182, 593, 752, 3718, 3815, 4132
AflIII ACRYGT 5 cut(s) 326, 757, 1252, 2002, 3991
AgeI ACCGGT 1 cut(s) 1941
AhdI GACNNNNNGTC 1 cut(s) 3441
AjiI CACGTC 1 cut(s) 758
AjuI GAANNNNNNNTTGG 4 cut(s) 2921, 2953, 3346, 3378
AleI CACNNNNGTG 1 cut(s) 2087
Alw21I GWGCWC 1 cut(s) 1516
Alw26I GTCTC 5 cut(s) 2443, 3585, 3671, 3961, 4145
Ama87I CYCGRG 3 cut(s) 1148, 1340, 3470
Aor13HI TCCGGA 2 cut(s) 22, 4024
AoxI GGCC 6 cut(s) 377, 442, 665, 3020, 3659, 3720
ApoI RAATTY 6 cut(s) 115, 1367, 1452, 1955, 2022, 2808
AseI ATTAAT 1 cut(s) 4020
AsiGI ACCGGT 1 cut(s) 1941
Asp700I GAANNNNTTC 4 cut(s) 136, 1383, 2736, 2808
AspLEI GCGC 1 cut(s) 1097
AspS9I GGNCC 8 cut(s) 98, 173, 206, 254, 378, 3659, 3721, 3866
AsuC2I CCSGG 5 cut(s) 501, 1341, 1342, 2595, 3024
AsuNHI GCTAGC 1 cut(s) 590
AvaI CYCGRG 3 cut(s) 1148, 1340, 3470
AvaII GGWCC 5 cut(s) 98, 173, 206, 254, 3866
BalI TGGCCA 1 cut(s) 444
BamHI GGATCC 2 cut(s) 523, 2032
BanI GGYRCC 2 cut(s) 1426, 1646
BanII GRGCYC 1 cut(s) 1516
BbsI GAAGAC 2 cut(s) 12, 2384
Bbv12I GWGCWC 1 cut(s) 1516
BceAI ACGGC 3 cut(s) 255, 3085, 3597
BciVI GTATCC 2 cut(s) 1235, 4188
BclI TGATCA 2 cut(s) 1633, 2820
BcnI CCSGG 5 cut(s) 501, 1341, 1342, 2595, 3024
BcoDI GTCTC 5 cut(s) 2443, 3585, 3671, 3961, 4145
BfaI CTAG 9 cut(s) 210, 591, 645, 840, 923, 951, 2367, 3402, 3743
BfmI CTRYAG 2 cut(s) 1791, 2296
BfuAI ACCTGC 3 cut(s) 671, 2102, 3067
BfuI GTATCC 2 cut(s) 1235, 4188
BglI GCCNNNNNGGC 1 cut(s) 2641
BglII AGATCT 4 cut(s) 2292, 2478, 2693, 2851
BmcAI AGTACT 1 cut(s) 2265
Bme18I GGWCC 5 cut(s) 98, 173, 206, 254, 3866
BmeRI GACNNNNNGTC 1 cut(s) 3441
BmeT110I CYCGRG 3 cut(s) 1148, 1340, 3470
BmgBI CACGTC 1 cut(s) 758
BmgT120I GGNCC 8 cut(s) 98, 173, 206, 254, 378, 3659, 3721, 3866
BmiI GGNNCC 8 cut(s) 255, 380, 525, 1413, 1428, 1648, 2034, 4124
BmrI ACTGGG 1 cut(s) 3127
BmsI GCATC 9 cut(s) 99, 472, 772, 1755, 2293, 2325, 2608, 3486, 3951
BmtI GCTAGC 1 cut(s) 594
BmuI ACTGGG 1 cut(s) 3127
BpiI GAAGAC 2 cut(s) 12, 2384
BpmI CTGGAG 4 cut(s) 1335, 1500, 2721, 3906
Bpu10I CCTNAGC 2 cut(s) 750, 2016
BpuEI CTTGAG 4 cut(s) 2432, 2622, 2840, 4102
BpuMI CCSGG 5 cut(s) 501, 1341, 1342, 2595, 3024
BsaAI YACGTR 1 cut(s) 3182
BsaBI GATNNNNATC 3 cut(s) 2529, 3348, 4176
BsaWI WCCGGW 4 cut(s) 22, 1277, 1941, 4024
BsaXI ACNNNNNCTCC 8 cut(s) 172, 202, 295, 325, 1503, 1533, 1771, 1801
Bsc4I CCNNNNNNNGG 6 cut(s) 182, 593, 752, 3718, 3815, 4132
Bse118I RCCGGY 1 cut(s) 1941
Bse8I GATNNNNATC 3 cut(s) 2529, 3348, 4176
BseAI TCCGGA 2 cut(s) 22, 4024
BseJI GATNNNNATC 3 cut(s) 2529, 3348, 4176
BseLI CCNNNNNNNGG 6 cut(s) 182, 593, 752, 3718, 3815, 4132
BseRI GAGGAG 3 cut(s) 193, 198, 3993
BseYI CCCAGC 1 cut(s) 381
BsgI GTGCAG 1 cut(s) 672
Bsh1236I CGCG 1 cut(s) 1095
BshFI GGCC 6 cut(s) 379, 444, 667, 3022, 3661, 3722
BshNI GGYRCC 2 cut(s) 1426, 1646
BshTI ACCGGT 1 cut(s) 1941
BsiHKAI GWGCWC 1 cut(s) 1516
BsiHKCI CYCGRG 3 cut(s) 1148, 1340, 3470
BsiSI CCGG 8 cut(s) 23, 500, 1278, 1341, 1942, 2594, 3023, 4025
BsiWI CGTACG 1 cut(s) 3614
BslFI GGGAC 6 cut(s) 345, 516, 717, 768, 2013, 3837
BslI CCNNNNNNNGG 6 cut(s) 182, 593, 752, 3718, 3815, 4132
BsmAI GTCTC 5 cut(s) 2443, 3585, 3671, 3961, 4145
BsmFI GGGAC 6 cut(s) 345, 516, 717, 768, 2013, 3837
BsnI GGCC 6 cut(s) 379, 444, 667, 3022, 3661, 3722
BsoBI CYCGRG 3 cut(s) 1148, 1340, 3470
Bsp1286I GDGCHC 1 cut(s) 1516
Bsp13I TCCGGA 2 cut(s) 22, 4024
BspACI CCGC 8 cut(s) 594, 633, 668, 1073, 1433, 2092, 3044, 3746
BspANI GGCC 6 cut(s) 379, 444, 667, 3022, 3661, 3722
BspEI TCCGGA 2 cut(s) 22, 4024
BspFNI CGCG 1 cut(s) 1095
BspHI TCATGA 2 cut(s) 1800, 2383
BspLI GGNNCC 8 cut(s) 255, 380, 525, 1413, 1428, 1648, 2034, 4124
BspMAI CTGCAG 1 cut(s) 1795
BspMI ACCTGC 3 cut(s) 671, 2102, 3067
BspOI GCTAGC 1 cut(s) 594
BspQI GCTCTTC 1 cut(s) 2715
BspT107I GGYRCC 2 cut(s) 1426, 1646
BsrBI CCGCTC 1 cut(s) 633
BsrFI RCCGGY 1 cut(s) 1941
BssAI RCCGGY 1 cut(s) 1941
BssT1I CCWWGG 3 cut(s) 1227, 1505, 3809
Bst4CI ACNGT 7 cut(s) 29, 507, 1601, 2080, 2127, 3416, 4096
Bst6I CTCTTC 4 cut(s) 33, 2682, 2715, 3026
BstBAI YACGTR 1 cut(s) 3182
BstC8I GCNNGC 8 cut(s) 319, 588, 592, 747, 1023, 2784, 3074, 3610
BstDSI CCRYGG 1 cut(s) 3759
BstEII GGTNACC 1 cut(s) 710
BstENI CCTNNNNNAGG 1 cut(s) 3813
BstFNI CGCG 1 cut(s) 1095
BstHHI GCGC 1 cut(s) 1097
BstMAI GTCTC 5 cut(s) 2443, 3585, 3671, 3961, 4145
BstNSI RCATGY 5 cut(s) 321, 330, 1256, 2006, 3995
BstPI GGTNACC 1 cut(s) 710
BstSFI CTRYAG 2 cut(s) 1791, 2296
BstUI CGCG 1 cut(s) 1095
BstV2I GAAGAC 2 cut(s) 12, 2384
BstXI CCANNNNNNTGG 1 cut(s) 3627
BsuI GTATCC 2 cut(s) 1235, 4188
BsuRI GGCC 6 cut(s) 379, 444, 667, 3022, 3661, 3722
BtgI CCRYGG 1 cut(s) 3759
BtrI CACGTC 1 cut(s) 758
BtsI GCAGTG 2 cut(s) 316, 2058
BveI ACCTGC 3 cut(s) 671, 2102, 3067
Cac8I GCNNGC 8 cut(s) 319, 588, 592, 747, 1023, 2784, 3074, 3610
CciI TCATGA 2 cut(s) 1800, 2383
CfoI GCGC 1 cut(s) 1097
Cfr10I RCCGGY 1 cut(s) 1941
Cfr13I GGNCC 8 cut(s) 98, 173, 206, 254, 378, 3659, 3721, 3866
Cfr9I CCCGGG 1 cut(s) 1340
CspAI ACCGGT 1 cut(s) 1941
CspCI CAANNNNNGTGG 4 cut(s) 109, 144, 2592, 2627
DraI TTTAAA 1 cut(s) 3273
DraIII CACNNNGTG 1 cut(s) 874
DrdI GACNNNNNNGTC 1 cut(s) 1844
DriI GACNNNNNGTC 1 cut(s) 3441
DseDI GACNNNNNNGTC 1 cut(s) 1844
EaeI YGGCCR 2 cut(s) 442, 3020
Eam1104I CTCTTC 4 cut(s) 33, 2682, 2715, 3026
Eam1105I GACNNNNNGTC 1 cut(s) 3441
EarI CTCTTC 4 cut(s) 33, 2682, 2715, 3026
EciI GGCGGA 1 cut(s) 1088
Ecl136II GAGCTC 1 cut(s) 1514
Eco130I CCWWGG 3 cut(s) 1227, 1505, 3809
Eco24I GRGCYC 1 cut(s) 1516
Eco32I GATATC 1 cut(s) 1867
Eco47I GGWCC 5 cut(s) 98, 173, 206, 254, 3866
Eco53kI GAGCTC 1 cut(s) 1514
Eco57I CTGAAG 2 cut(s) 2486, 2945
Eco88I CYCGRG 3 cut(s) 1148, 1340, 3470
Eco91I GGTNACC 1 cut(s) 710
EcoICRI GAGCTC 1 cut(s) 1514
EcoNI CCTNNNNNAGG 1 cut(s) 3813
EcoO109I RGGNCCY 3 cut(s) 98, 254, 378
EcoO65I GGTNACC 1 cut(s) 710
EcoRI GAATTC 1 cut(s) 2022
EcoRV GATATC 1 cut(s) 1867
EcoT14I CCWWGG 3 cut(s) 1227, 1505, 3809
EcoT38I GRGCYC 1 cut(s) 1516
ErhI CCWWGG 3 cut(s) 1227, 1505, 3809
FaqI GGGAC 6 cut(s) 345, 516, 717, 768, 2013, 3837
FauNDI CATATG 1 cut(s) 4036
FbaI TGATCA 2 cut(s) 1633, 2820
FriOI GRGCYC 1 cut(s) 1516
FspBI CTAG 9 cut(s) 210, 591, 645, 840, 923, 951, 2367, 3402, 3743
GlaI GCGC 1 cut(s) 1096
GsaI CCCAGC 1 cut(s) 385
GsuI CTGGAG 4 cut(s) 1335, 1500, 2721, 3906
HaeIII GGCC 6 cut(s) 379, 444, 667, 3022, 3661, 3722
HapII CCGG 8 cut(s) 23, 500, 1278, 1341, 1942, 2594, 3023, 4025
HhaI GCGC 1 cut(s) 1097
Hin6I GCGC 1 cut(s) 1095
HinP1I GCGC 1 cut(s) 1095
HincII GTYRAC 2 cut(s) 763, 2172
HindII GTYRAC 2 cut(s) 763, 2172
HindIII AAGCTT 3 cut(s) 2733, 3390, 3606
HpaI GTTAAC 2 cut(s) 763, 2172
HpaII CCGG 8 cut(s) 23, 500, 1278, 1341, 1942, 2594, 3023, 4025
Hpy166II GTNNAC 3 cut(s) 763, 2172, 3185
Hpy8I GTNNAC 3 cut(s) 763, 2172, 3185
HpyAV CCTTC 8 cut(s) 924, 2173, 2510, 2831, 2923, 3295, 3650, 3996
HpyCH4III ACNGT 7 cut(s) 29, 507, 1601, 2080, 2127, 3416, 4096
HpyCH4IV ACGT 4 cut(s) 691, 757, 815, 3181
HpySE526I ACGT 4 cut(s) 691, 757, 815, 3181
HspAI GCGC 1 cut(s) 1095
Kpn2I TCCGGA 2 cut(s) 22, 4024
Ksp22I TGATCA 2 cut(s) 1633, 2820
KspAI GTTAAC 2 cut(s) 763, 2172
LguI GCTCTTC 1 cut(s) 2715
LmnI GCTCC 7 cut(s) 493, 502, 1417, 1511, 1519, 1792, 3913
LweI GCATC 9 cut(s) 99, 472, 772, 1755, 2293, 2325, 2608, 3486, 3951
MaeI CTAG 9 cut(s) 210, 591, 645, 840, 923, 951, 2367, 3402, 3743
MaeII ACGT 4 cut(s) 691, 757, 815, 3181
MaeIII GTNAC 8 cut(s) 710, 1109, 1123, 1153, 1585, 2080, 2282, 4051
MbiI CCGCTC 1 cut(s) 633
MfeI CAATTG 2 cut(s) 1457, 1574
MhlI GDGCHC 1 cut(s) 1516
MlsI TGGCCA 1 cut(s) 444
MluNI TGGCCA 1 cut(s) 444
MlyI GAGTC 6 cut(s) 2, 406, 852, 1729, 2374, 2395
MmeI TCCRAC 6 cut(s) 307, 1276, 2423, 2532, 3429, 3891
Mox20I TGGCCA 1 cut(s) 444
MroI TCCGGA 2 cut(s) 22, 4024
MroXI GAANNNNTTC 4 cut(s) 136, 1383, 2736, 2808
MscI TGGCCA 1 cut(s) 444
MslI CAYNNNNRTG 2 cut(s) 2087, 3209
Msp20I TGGCCA 1 cut(s) 444
MspA1I CMGCKG 1 cut(s) 1433
MspI CCGG 8 cut(s) 23, 500, 1278, 1341, 1942, 2594, 3023, 4025
MunI CAATTG 2 cut(s) 1457, 1574
MvnI CGCG 1 cut(s) 1095
NciI CCSGG 5 cut(s) 501, 1341, 1342, 2595, 3024
NdeI CATATG 1 cut(s) 4036
NheI GCTAGC 1 cut(s) 590
NlaIV GGNNCC 8 cut(s) 255, 380, 525, 1413, 1428, 1648, 2034, 4124
NmuCI GTSAC 3 cut(s) 1585, 2080, 4051
NspI RCATGY 5 cut(s) 321, 330, 1256, 2006, 3995
OliI CACNNNNGTG 1 cut(s) 2087
PaeI GCATGC 1 cut(s) 321
PaeR7I CTCGAG 1 cut(s) 3470
PagI TCATGA 2 cut(s) 1800, 2383
PciI ACATGT 4 cut(s) 326, 1252, 2002, 3991
PciSI GCTCTTC 1 cut(s) 2715
PcsI WCGNNNNNNNCGW 2 cut(s) 257, 736
PdmI GAANNNNTTC 4 cut(s) 136, 1383, 2736, 2808
PfeI GAWTC 6 cut(s) 367, 1274, 1396, 1579, 3509, 3997
Pfl23II CGTACG 1 cut(s) 3614
PflFI GACNNNGTC 1 cut(s) 102
PfoI TCCNGGA 4 cut(s) 94, 499, 1138, 1824
PinAI ACCGGT 1 cut(s) 1941
PleI GAGTC 6 cut(s) 2, 406, 851, 1729, 2374, 2395
PpsI GAGTC 6 cut(s) 2, 406, 851, 1729, 2374, 2395
Ppu21I YACGTR 1 cut(s) 3182
PpuMI RGGWCCY 2 cut(s) 98, 254
PscI ACATGT 4 cut(s) 326, 1252, 2002, 3991
PshBI ATTAAT 1 cut(s) 4020
PsiI TTATAA 1 cut(s) 1089
Psp124BI GAGCTC 1 cut(s) 1516
Psp5II RGGWCCY 2 cut(s) 98, 254
PspEI GGTNACC 1 cut(s) 710
PspFI CCCAGC 1 cut(s) 381
PspLI CGTACG 1 cut(s) 3614
PspN4I GGNNCC 8 cut(s) 255, 380, 525, 1413, 1428, 1648, 2034, 4124
PspPI GGNCC 8 cut(s) 98, 173, 206, 254, 378, 3659, 3721, 3866
PspPPI RGGWCCY 2 cut(s) 98, 254
PspXI VCTCGAGB 1 cut(s) 3470
PstI CTGCAG 1 cut(s) 1795
PsyI GACNNNGTC 1 cut(s) 102
RseI CAYNNNNRTG 2 cut(s) 2087, 3209
SacI GAGCTC 1 cut(s) 1516
SapI GCTCTTC 1 cut(s) 2715
Sau96I GGNCC 8 cut(s) 98, 173, 206, 254, 378, 3659, 3721, 3866
ScaI AGTACT 1 cut(s) 2265
SchI GAGTC 6 cut(s) 2, 406, 852, 1729, 2374, 2395
SduI GDGCHC 1 cut(s) 1516
SfaNI GCATC 9 cut(s) 99, 472, 772, 1755, 2293, 2325, 2608, 3486, 3951
SfcI CTRYAG 2 cut(s) 1791, 2296
Sfr274I CTCGAG 1 cut(s) 3470
SinI GGWCC 5 cut(s) 98, 173, 206, 254, 3866
SlaI CTCGAG 1 cut(s) 3470
SmaI CCCGGG 1 cut(s) 1342
SmiMI CAYNNNNRTG 2 cut(s) 2087, 3209
SmlI CTYRAG 5 cut(s) 2411, 2637, 2855, 3470, 4081
SmoI CTYRAG 5 cut(s) 2411, 2637, 2855, 3470, 4081
SphI GCATGC 1 cut(s) 321
SsiI CCGC 8 cut(s) 594, 633, 668, 1073, 1433, 2092, 3044, 3746
SspI AATATT 2 cut(s) 3334, 3691
SspMI CTAG 9 cut(s) 210, 591, 645, 840, 923, 951, 2367, 3402, 3743
SstI GAGCTC 1 cut(s) 1516
StyI CCWWGG 3 cut(s) 1227, 1505, 3809
TaaI ACNGT 7 cut(s) 29, 507, 1601, 2080, 2127, 3416, 4096
TaiI ACGT 4 cut(s) 694, 760, 818, 3184
TatI WGTACW 2 cut(s) 2263, 3416
TauI GCSGC 1 cut(s) 670
TfiI GAWTC 6 cut(s) 367, 1274, 1396, 1579, 3509, 3997
TseFI GTSAC 3 cut(s) 1585, 2080, 4051
Tsp45I GTSAC 3 cut(s) 1585, 2080, 4051
TspGWI ACGGA 4 cut(s) 249, 567, 3776, 4148
TspMI CCCGGG 1 cut(s) 1340
Tth111I GACNNNGTC 1 cut(s) 102
VpaK11BI GGWCC 5 cut(s) 98, 173, 206, 254, 3866
VspI ATTAAT 1 cut(s) 4020
XagI CCTNNNNNAGG 1 cut(s) 3813
XapI RAATTY 6 cut(s) 115, 1367, 1452, 1955, 2022, 2808
XceI RCATGY 5 cut(s) 321, 330, 1256, 2006, 3995
XcmI CCANNNNNNNNNTGG 2 cut(s) 452, 3015
XhoI CTCGAG 1 cut(s) 3470
XmaI CCCGGG 1 cut(s) 1340
XmnI GAANNNNTTC 4 cut(s) 136, 1383, 2736, 2808
XspI CTAG 9 cut(s) 210, 591, 645, 840, 923, 951, 2367, 3402, 3743
ZrmI AGTACT 1 cut(s) 2265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.