FvH4_6g27022

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000094
Physical Location & Seq
Forward (+)
20675850 .. 20677481
1632 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27022.t1

Sequence Viewer

Length: 1632 bp
ATGGATTTGATGAACAGGGTGTTTCGCCCATATCTAGACCGTTTTGTCATTGTGTTCATTGATGATATTCTGGTCTATTCAAAGAGTGAGAAGTTACACTCTAAACATTTGAGTCTGGTGCTTCAGACTTTGAGGTGTGCAGAGCTATATGCCAAGTTTAGTAAATGCGAGTTTTGGCTTGATTGTGTTGGATTTTTGGGCCATGTTATTTCAGCTGAGGGTGTTAGTGTGGATCCTCAAAAGGTGGAAGCGGTGACTAATTGGTGTAGACCTAATAGTGTAACCGAGATTCGTAGTTTCTTGGGTTTAGCAGGCTATTATCGTCGTTTTGTACAAGATTTCTCTAAGATCGCCGCTCCACTTACAAGATTGACGAGGAAAGGAGTTAAGTTTGAGTGGTCTGAGAAATGTGAGCAGAGTTTTCAAGAACTCAAGAATCGGTTAACTAGTGCTCCTGTTTTGGCTTTACCTGATGATAGTGGAGAATATGTGTTATATTGTGATGCATCAAGAGTGGGTTTGGGTGGTGTGCTTATGCAGCATGAAAATGTAATTGCCTATGCTTCTAGGCAACTTAAGCCACATGAGTTGAATTATCCAACCCATGATTTAGAGCTTGCCGCGGTGGTTTTTGCATTGAAGTTATGGAGGCACTATCTTTATGGAGCTAAGTGCCAAATCTTTACAGATCACAAAAGTCTCCGATACATTTTTACTCAAAAAGAATTGAATTTGAGGCAAAGGAGGTGGATGGAGTTGATTAAAGATTATGATTGCACTATTGAGTACCACCCTGGAAGAGCGAATGTGGTGGCAGATGCTCTTAGTCGGAAGCCTACTTGTAGCTTATCCTATTTAAGGACAGTTCGACTTCCTCTTCTTTATGAGCTACGAGCTACAAGAGTTGATTTGTCTGTGGATAGAGTTGGTACTTTGGTTGCTAGTTTCCATGTGAGACCGATTCTGATTGACAGAGTGCGAGAGGCACAATATCAGGACCCATCCATTGTCCGCTTGATTGAAAGAACACGTGGTGGCACCACGGTGGGATTCTCCATTGGAAAAGATGGGGTATTATTATTTAAAAACAGACTTTGTGTGCCGAAAAGAAATGAAGTGCTTAAGCAAGAGATTTTGGAGGAAGCTCACAGTTCTCCTTATGCGATGCATCCTGGTAGTACTAAGATGTATCGGACTTTGAGGGAATTTTATTGGTGGCCAAATATGAAGAGAGAGATTGCGGCTTTTGTGAGTAGATGCTTGGTTTGCCAGCAGGTGAAAGCTGAAAGGCAGAAACCAGCAGGGTTGCAACAACCCCTGGAGATTCCAGTGTGGAAATGGGATCATATCACTATGGACTTTGTTTATGGTCTACCTCGTTCCCGAGATGGTCATGATGGTATTTGGGTGATTGTTGATCGACTCACCAAATCAGCACACTTCTTGCCGGTTAATAAAACCTATAAATTGGAGGAATTGGCAGCATTGTATGTAAATGAGATTGTCAGACTTCATGGGGTGCCAGAATCTATAGTATCTAATCGGGATCCTCGTTTTGTGTCAAAGTTTTGGAAAAGGTTACAGACGGCTTTGGGGACTCGATTATGTTTTAGCACCGCCTTTCATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

544

Amino Acids

62.95

Weight (kDa)

9.34

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 3 - 70 1.1e-10 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 133 - 227 1.7e-33 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 159 - 257 7.7e-34 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 372 - 428 4.2e-20 Integrase zinc binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1264
AasI GACNNNNNNGTC 1 cut(s) 44
Acc36I ACCTGC 1 cut(s) 1264
AccB1I GGYRCC 2 cut(s) 1037, 1519
AccBSI CCGCTC 1 cut(s) 356
AccI GTMKAC 2 cut(s) 268, 1372
AccII CGCG 1 cut(s) 623
AciI CCGC 7 cut(s) 251, 354, 621, 623, 1012, 1241, 1617
AclWI GGATC 5 cut(s) 227, 240, 1350, 1541, 1554
AcoI YGGCCR 1 cut(s) 1217
AcsI RAATTY 2 cut(s) 730, 1205
AcuI CTGAAG 1 cut(s) 107
AcvI CACGTG 1 cut(s) 1031
AdeI CACNNNGTG 1 cut(s) 1034
AfaI GTAC 4 cut(s) 333, 788, 931, 1180
AfiI CCNNNNNNNGG 1 cut(s) 858
AflII CTTAAG 2 cut(s) 575, 1121
AflIII ACRYGT 1 cut(s) 1028
AgsI TTSAA 6 cut(s) 81, 425, 592, 640, 730, 1022
AhlI ACTAGT 1 cut(s) 446
AjnI CCWGG 3 cut(s) 793, 1171, 1317
AleI CACNNNNGTG 1 cut(s) 1043
AluBI AGCT 9 cut(s) 145, 215, 616, 668, 846, 889, 896, 1145, 1283
AluI AGCT 9 cut(s) 145, 215, 616, 668, 846, 889, 896, 1145, 1283
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 2 cut(s) 704, 949
AlwI GGATC 5 cut(s) 227, 240, 1350, 1541, 1554
Ama87I CYCGRG 1 cut(s) 1383
AoxI GGCC 2 cut(s) 199, 1217
ApeKI GCWGC 2 cut(s) 538, 1481
ApoI RAATTY 2 cut(s) 730, 1205
AspS9I GGNCC 2 cut(s) 199, 997
AsuHPI GGTGA 4 cut(s) 265, 1288, 1417, 1420
AvaI CYCGRG 1 cut(s) 1383
AvaII GGWCC 1 cut(s) 997
BaeI ACNNNNGTAYC 2 cut(s) 921, 954
BalI TGGCCA 1 cut(s) 1219
BamHI GGATCC 2 cut(s) 232, 1546
BanI GGYRCC 2 cut(s) 1037, 1519
BbrPI CACGTG 1 cut(s) 1031
Bbv12I GWGCWC 1 cut(s) 454
BbvCI CCTCAGC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 550, 1493
BccI CCATC 5 cut(s) 745, 1009, 1061, 1382, 1391
BceAI ACGGC 1 cut(s) 1602
BciT130I CCWGG 3 cut(s) 795, 1173, 1319
BcoDI GTCTC 2 cut(s) 704, 949
BcuI ACTAGT 1 cut(s) 446
BfaI CTAG 4 cut(s) 35, 447, 567, 942
BfmI CTRYAG 1 cut(s) 1530
BfrI CTTAAG 2 cut(s) 575, 1121
BfuAI ACCTGC 1 cut(s) 1264
BisI GCNGC 5 cut(s) 354, 539, 621, 1242, 1482
BlsI GCNGC 5 cut(s) 355, 540, 622, 1243, 1483
BmcAI AGTACT 1 cut(s) 1180
Bme1390I CCNGG 3 cut(s) 795, 1173, 1319
Bme18I GGWCC 1 cut(s) 997
BmeT110I CYCGRG 1 cut(s) 1383
BmgT120I GGNCC 2 cut(s) 199, 997
BmiI GGNNCC 5 cut(s) 234, 999, 1039, 1521, 1548
BmrFI CCNGG 3 cut(s) 795, 1173, 1319
BmsI GCATC 6 cut(s) 493, 515, 808, 1155, 1177, 1247
BpmI CTGGAG 1 cut(s) 1340
Bpu10I CCTNAGC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 416
BsaAI YACGTR 1 cut(s) 1031
BsaI GGTCTC 1 cut(s) 949
BsaJI CCNNGG 4 cut(s) 621, 793, 1041, 1317
BsaXI ACNNNNNCTCC 4 cut(s) 436, 466, 474, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 858
Bse118I RCCGGY 1 cut(s) 1447
Bse1I ACTGG 1 cut(s) 1328
BseBI CCWGG 3 cut(s) 795, 1173, 1319
BseDI CCNNGG 4 cut(s) 621, 793, 1041, 1317
BseGI GGATG 4 cut(s) 756, 1001, 1168, 1624
BseLI CCNNNNNNNGG 1 cut(s) 858
BseMII CTCAG 2 cut(s) 207, 393
BseNI ACTGG 1 cut(s) 1328
BseXI GCAGC 2 cut(s) 550, 1493
BsgI GTGCAG 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 623
BshFI GGCC 2 cut(s) 201, 1219
BshNI GGYRCC 2 cut(s) 1037, 1519
BsiHKAI GWGCWC 1 cut(s) 454
BsiHKCI CYCGRG 1 cut(s) 1383
BsiSI CCGG 1 cut(s) 1448
BslFI GGGAC 1 cut(s) 1609
BslI CCNNNNNNNGG 1 cut(s) 858
BsmAI GTCTC 2 cut(s) 704, 949
BsmFI GGGAC 1 cut(s) 1609
BsnI GGCC 2 cut(s) 201, 1219
Bso31I GGTCTC 1 cut(s) 949
BsoBI CYCGRG 1 cut(s) 1383
Bsp1286I GDGCHC 1 cut(s) 454
Bsp1407I TGTACA 1 cut(s) 331
Bsp143I GATC 6 cut(s) 232, 348, 688, 1342, 1417, 1546
BspACI CCGC 7 cut(s) 251, 354, 621, 623, 1012, 1241, 1617
BspANI GGCC 2 cut(s) 201, 1219
BspCNI CTCAG 2 cut(s) 208, 394
BspFNI CGCG 1 cut(s) 623
BspHI TCATGA 1 cut(s) 1393
BspLI GGNNCC 5 cut(s) 234, 999, 1039, 1521, 1548
BspMI ACCTGC 1 cut(s) 1264
BspPI GGATC 5 cut(s) 227, 240, 1350, 1541, 1554
BspQI GCTCTTC 1 cut(s) 793
BspT107I GGYRCC 2 cut(s) 1037, 1519
BspTI CTTAAG 2 cut(s) 575, 1121
BspTNI GGTCTC 1 cut(s) 949
BsrBI CCGCTC 1 cut(s) 356
BsrFI RCCGGY 1 cut(s) 1447
BsrGI TGTACA 1 cut(s) 331
BsrI ACTGG 1 cut(s) 1328
BssAI RCCGGY 1 cut(s) 1447
BssECI CCNNGG 4 cut(s) 621, 793, 1041, 1317
BssMI GATC 6 cut(s) 232, 348, 688, 1342, 1417, 1546
Bst2UI CCWGG 3 cut(s) 795, 1173, 1319
Bst4CI ACNGT 4 cut(s) 41, 865, 1045, 1151
Bst6I CTCTTC 3 cut(s) 793, 882, 1223
BstAFI CTTAAG 2 cut(s) 575, 1121
BstAUI TGTACA 1 cut(s) 331
BstBAI YACGTR 1 cut(s) 1031
BstC8I GCNNGC 3 cut(s) 313, 618, 1271
BstDEI CTNAG 6 cut(s) 216, 345, 402, 669, 824, 1182
BstDSI CCRYGG 2 cut(s) 621, 1041
BstENI CCTNNNNNAGG 1 cut(s) 856
BstF5I GGATG 4 cut(s) 756, 1001, 1168, 1624
BstFNI CGCG 1 cut(s) 623
BstKTI GATC 6 cut(s) 235, 351, 691, 1345, 1420, 1549
BstMAI GTCTC 2 cut(s) 704, 949
BstMBI GATC 6 cut(s) 232, 348, 688, 1342, 1417, 1546
BstMWI GCNNNNNNNGC 3 cut(s) 538, 577, 1266
BstNI CCWGG 3 cut(s) 795, 1173, 1319
BstSCI CCNGG 3 cut(s) 793, 1171, 1317
BstSFI CTRYAG 1 cut(s) 1530
BstUI CGCG 1 cut(s) 623
BstV1I GCAGC 2 cut(s) 550, 1493
BstX2I RGATCY 2 cut(s) 232, 1546
BstYI RGATCY 2 cut(s) 232, 1546
BsuRI GGCC 2 cut(s) 201, 1219
BtgI CCRYGG 2 cut(s) 621, 1041
BtgZI GCGATG 1 cut(s) 1178
BtsCI GGATG 4 cut(s) 756, 1001, 1168, 1624
BtsIMutI CAGTG 1 cut(s) 1335
BveI ACCTGC 1 cut(s) 1264
Cac8I GCNNGC 3 cut(s) 313, 618, 1271
CciI TCATGA 1 cut(s) 1393
Cfr10I RCCGGY 1 cut(s) 1447
Cfr13I GGNCC 2 cut(s) 199, 997
Cfr42I CCGCGG 1 cut(s) 624
Csp6I GTAC 4 cut(s) 332, 787, 930, 1179
CspCI CAANNNNNGTGG 4 cut(s) 570, 605, 728, 763
CviAII CATG 7 cut(s) 203, 542, 584, 605, 950, 1394, 1514
CviQI GTAC 4 cut(s) 332, 787, 930, 1179
DdeI CTNAG 6 cut(s) 216, 345, 402, 669, 824, 1182
DpnI GATC 6 cut(s) 234, 350, 690, 1344, 1419, 1548
DpnII GATC 6 cut(s) 232, 348, 688, 1342, 1417, 1546
DraI TTTAAA 1 cut(s) 1084
DraIII CACNNNGTG 1 cut(s) 1034
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
EaeI YGGCCR 1 cut(s) 1217
Eam1104I CTCTTC 3 cut(s) 793, 882, 1223
EarI CTCTTC 3 cut(s) 793, 882, 1223
Eco31I GGTCTC 1 cut(s) 949
Eco47I GGWCC 1 cut(s) 997
Eco57I CTGAAG 1 cut(s) 107
Eco72I CACGTG 1 cut(s) 1031
Eco88I CYCGRG 1 cut(s) 1383
EcoNI CCTNNNNNAGG 1 cut(s) 856
EcoO109I RGGNCCY 1 cut(s) 997
EcoRII CCWGG 3 cut(s) 793, 1171, 1317
EcoT22I ATGCAT 2 cut(s) 508, 1170
FaeI CATG 7 cut(s) 206, 545, 587, 608, 953, 1397, 1517
FaqI GGGAC 1 cut(s) 1609
FatI CATG 7 cut(s) 202, 541, 583, 604, 949, 1393, 1513
FblI GTMKAC 2 cut(s) 268, 1372
Fnu4HI GCNGC 5 cut(s) 354, 539, 621, 1242, 1482
FokI GGATG 4 cut(s) 763, 988, 1155, 1611
Fsp4HI GCNGC 5 cut(s) 354, 539, 621, 1242, 1482
FspBI CTAG 4 cut(s) 35, 447, 567, 942
GluI GCNGC 5 cut(s) 354, 539, 621, 1242, 1482
GsuI CTGGAG 1 cut(s) 1340
HaeIII GGCC 2 cut(s) 201, 1219
HapII CCGG 1 cut(s) 1448
Hin1II CATG 7 cut(s) 206, 545, 587, 608, 953, 1397, 1517
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HinfI GANTC 9 cut(s) 112, 289, 436, 961, 1050, 1324, 1422, 1526, 1597
HpaI GTTAAC 1 cut(s) 444
HpaII CCGG 1 cut(s) 1448
HphI GGTGA 4 cut(s) 265, 1288, 1417, 1420
Hpy166II GTNNAC 3 cut(s) 269, 444, 1373
Hpy188I TCNGA 7 cut(s) 126, 403, 704, 831, 966, 1194, 1508
Hpy188III TCNNGA 8 cut(s) 35, 425, 433, 510, 995, 1383, 1394, 1544
Hpy8I GTNNAC 3 cut(s) 269, 444, 1373
Hpy99I CGWCG 1 cut(s) 327
HpyCH4III ACNGT 4 cut(s) 41, 865, 1045, 1151
HpyCH4IV ACGT 1 cut(s) 1030
HpyCH4V TGCA 7 cut(s) 140, 506, 538, 635, 777, 1168, 1309
HpyF10VI GCNNNNNNNGC 3 cut(s) 538, 577, 1266
HpyF3I CTNAG 6 cut(s) 216, 345, 402, 669, 824, 1182
HpySE526I ACGT 1 cut(s) 1030
Hsp92II CATG 7 cut(s) 206, 545, 587, 608, 953, 1397, 1517
KspAI GTTAAC 1 cut(s) 444
KspI CCGCGG 1 cut(s) 624
Kzo9I GATC 6 cut(s) 232, 348, 688, 1342, 1417, 1546
LguI GCTCTTC 1 cut(s) 793
LmnI GCTCC 3 cut(s) 361, 457, 665
Lsp1109I GCAGC 2 cut(s) 550, 1493
LweI GCATC 6 cut(s) 493, 515, 808, 1155, 1177, 1247
MaeI CTAG 4 cut(s) 35, 447, 567, 942
MaeII ACGT 1 cut(s) 1030
MaeIII GTNAC 4 cut(s) 93, 253, 280, 1578
MalI GATC 6 cut(s) 234, 350, 690, 1344, 1419, 1548
MbiI CCGCTC 1 cut(s) 356
MboI GATC 6 cut(s) 232, 348, 688, 1342, 1417, 1546
MboII GAAGA 3 cut(s) 810, 869, 1240
MflI RGATCY 2 cut(s) 232, 1546
MhlI GDGCHC 1 cut(s) 454
MlsI TGGCCA 1 cut(s) 1219
MluCI AATT 8 cut(s) 259, 552, 592, 725, 730, 1205, 1466, 1475
MluNI TGGCCA 1 cut(s) 1219
MlyI GAGTC 3 cut(s) 121, 1416, 1591
MmeI TCCRAC 3 cut(s) 169, 623, 809
Mox20I TGGCCA 1 cut(s) 1219
Mph1103I ATGCAT 2 cut(s) 508, 1170
MscI TGGCCA 1 cut(s) 1219
MseI TTAA 8 cut(s) 387, 443, 576, 762, 857, 1083, 1122, 1452
MslI CAYNNNNRTG 2 cut(s) 546, 1043
Msp20I TGGCCA 1 cut(s) 1219
MspA1I CMGCKG 2 cut(s) 215, 623
MspCI CTTAAG 2 cut(s) 575, 1121
MspI CCGG 1 cut(s) 1448
MspR9I CCNGG 3 cut(s) 795, 1173, 1319
MvaI CCWGG 3 cut(s) 795, 1173, 1319
MvnI CGCG 1 cut(s) 623
MwoI GCNNNNNNNGC 3 cut(s) 538, 577, 1266
NdeII GATC 6 cut(s) 232, 348, 688, 1342, 1417, 1546
NlaIII CATG 7 cut(s) 206, 545, 587, 608, 953, 1397, 1517
NlaIV GGNNCC 5 cut(s) 234, 999, 1039, 1521, 1548
NmuCI GTSAC 1 cut(s) 253
NsiI ATGCAT 2 cut(s) 508, 1170
OliI CACNNNNGTG 1 cut(s) 1043
PagI TCATGA 1 cut(s) 1393
PaqCI CACCTGC 1 cut(s) 1264
PciSI GCTCTTC 1 cut(s) 793
PcsI WCGNNNNNNNCGW 1 cut(s) 1549
PfeI GAWTC 6 cut(s) 289, 436, 961, 1050, 1324, 1526
PkrI GCNGC 5 cut(s) 355, 540, 622, 1243, 1483
PleI GAGTC 3 cut(s) 120, 1416, 1591
PmaCI CACGTG 1 cut(s) 1031
PmlI CACGTG 1 cut(s) 1031
PpsI GAGTC 3 cut(s) 120, 1416, 1591
Ppu21I YACGTR 1 cut(s) 1031
PpuMI RGGWCCY 1 cut(s) 997
Psp5II RGGWCCY 1 cut(s) 997
Psp6I CCWGG 3 cut(s) 793, 1171, 1317
PspCI CACGTG 1 cut(s) 1031
PspGI CCWGG 3 cut(s) 793, 1171, 1317
PspN4I GGNNCC 5 cut(s) 234, 999, 1039, 1521, 1548
PspPI GGNCC 2 cut(s) 199, 997
PspPPI RGGWCCY 1 cut(s) 997
PsuI RGATCY 2 cut(s) 232, 1546
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 4 cut(s) 333, 788, 931, 1180
RsaNI GTAC 4 cut(s) 332, 787, 930, 1179
RseI CAYNNNNRTG 2 cut(s) 546, 1043
SacII CCGCGG 1 cut(s) 624
SapI GCTCTTC 1 cut(s) 793
SaqAI TTAA 8 cut(s) 387, 443, 576, 762, 857, 1083, 1122, 1452
SatI GCNGC 5 cut(s) 354, 539, 621, 1242, 1482
Sau3AI GATC 6 cut(s) 232, 348, 688, 1342, 1417, 1546
Sau96I GGNCC 2 cut(s) 199, 997
ScaI AGTACT 1 cut(s) 1180
SchI GAGTC 3 cut(s) 121, 1416, 1591
ScrFI CCNGG 3 cut(s) 795, 1173, 1319
SduI GDGCHC 1 cut(s) 454
SfaNI GCATC 6 cut(s) 493, 515, 808, 1155, 1177, 1247
SfcI CTRYAG 1 cut(s) 1530
Sfr303I CCGCGG 1 cut(s) 624
SgrBI CCGCGG 1 cut(s) 624
SinI GGWCC 1 cut(s) 997
SmiMI CAYNNNNRTG 2 cut(s) 546, 1043
SmlI CTYRAG 3 cut(s) 431, 575, 1121
SmoI CTYRAG 3 cut(s) 431, 575, 1121
SpeI ACTAGT 1 cut(s) 446
Sse9I AATT 8 cut(s) 259, 552, 592, 725, 730, 1205, 1466, 1475
SsiI CCGC 7 cut(s) 251, 354, 621, 623, 1012, 1241, 1617
SspMI CTAG 4 cut(s) 35, 447, 567, 942
StyD4I CCNGG 3 cut(s) 793, 1171, 1317
TaaI ACNGT 4 cut(s) 41, 865, 1045, 1151
TaiI ACGT 1 cut(s) 1033
TaqI TCGA 3 cut(s) 868, 1420, 1600
TaqII GACCGA 1 cut(s) 973
TasI AATT 8 cut(s) 259, 552, 592, 725, 730, 1205, 1466, 1475
TatI WGTACW 2 cut(s) 331, 1178
TauI GCSGC 3 cut(s) 356, 623, 1244
TfiI GAWTC 6 cut(s) 289, 436, 961, 1050, 1324, 1526
Tru1I TTAA 8 cut(s) 387, 443, 576, 762, 857, 1083, 1122, 1452
Tru9I TTAA 8 cut(s) 387, 443, 576, 762, 857, 1083, 1122, 1452
TscAI CASTG 1 cut(s) 1335
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 2 cut(s) 538, 1481
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 7 cut(s) 26, 46, 558, 1128, 1241, 1502, 1613
TspRI CASTG 1 cut(s) 1335
Vha464I CTTAAG 2 cut(s) 575, 1121
VpaK11BI GGWCC 1 cut(s) 997
XagI CCTNNNNNAGG 1 cut(s) 856
XapI RAATTY 2 cut(s) 730, 1205
XbaI TCTAGA 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 1335
XmiI GTMKAC 2 cut(s) 268, 1372
XspI CTAG 4 cut(s) 35, 447, 567, 942
ZrmI AGTACT 1 cut(s) 1180
Zsp2I ATGCAT 2 cut(s) 508, 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.