FvH4_3g06962

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000094
Physical Location & Seq
Forward (+)
4085650 .. 4087243
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g06962.t1

Sequence Viewer

Length: 1521 bp
ATGCAGCCATGGCCATTGAGTCTATGGGGATGTATAGTGCCTCGGCCACGAGATTTCGGTGGCCCCAGTCAGGGTCCATCCAAGAAAGCTGCTTCATCATCCGCTTCAGGTTCATCAGCTGGTAGTGGCAGTAGTGGGGGATCAGGTTCTCATTCTCGGTTCAGGGTTAGAGGACGTCACAGGAGACCTGCTAGGAGCCAGTTGGGTAGGCAGCAGTCTGGGCAGTATGGTTCGGGTGGCAGTTTCCATGGTGGGTCATCCGGTAGCCAGACTTTTTCTCATGGGCAGCAGCAGCAGTTTTCTGGGTGCTTTGAGTGTGGTGGTCATGACCACTTCAGGAGAGATTGCCCATTGTTGGCTCAGAGGACCACTCCCACCCCTACTCAGCCTATTGGTCAGTCTTCAGCTGGAGGCTCTAGTAGTGGTGCCCAGGGCAGTGCTTCGGTCAGAGGTGGCTCCCAGCGGGGAAGTGGTCAGCGTGGACGTCCCATGACTCGCGCTAGACTGCATGCTATGACTCAGCAGGAGGGTCGTACTTCTCCAGATGTTATCATTGGTACGTTATTGATTTTTGGTCAGCCTGCTTTTACTTTAATTGATCCCGGAGCCACGCATTCATTCATGTCTAGTAGATTTGCCCTCCATGCCAATGTGCCATCCTCGTCTCTTCCAGGCGAGTGGCATGTGTCTTTACCCTCCGGTGAGGTGATGAGAATAAATTGGGTATTTAGTGGCTGTGAAGTGGTAGTGGAAGGAGTTATTTTCGAGGCTGATTTAATTCCTTTAGATATAGTGGAGTTTGATGTGATATTGGGAATGGACTTTTTGGAAGCATATAGAGCTATGGTAGATTGTTTTCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTTTGAGGTTGCTTTCCAAGGGGAAAGAGATGTTATTTTTAGTTGCATAATTTCCGCTGTTGCTGCAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATTTCTAGCTCATGTGGTGGATACAAGTATGGGAGTTGTGGGATTAGAAGATATTCTTGTAGTAAGAGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGAGATAGACTTCTCTATAGAATTACTTCCCGGAACTATGCCTATCTCTCAGGCGCCTTACAGAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAATTGCAGGAGTTGGTAGATAAGGGTTTTATTCGGCCTAGCATGTCTCCACGGGGTGCTCCAGTGTTGTTTGTTAAGAAGAAAGATGGCACCATGAGACTATGCATTGATTATAGGAAGCTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGAGGGGTGCCTCTGTTTTCTCCAAGATTGATTTGAGATCGGGGTATCATCAGTTACGGATCCGAGAGGGGGACATAGCCAAGACTGCTTTTCGGTCACGATATGGGTGTTTAGTCCATATCTTGATCGTTTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

507

Amino Acids

54.85

Weight (kDa)

9.26

Isoelectric Point (pI)

45.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 164 - 294 1.6e-33 Retroviral aspartyl protease
RVT_1 PF00078 425 - 494 1.6e-10 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 178, 487
Acc36I ACCTGC 1 cut(s) 196
AccB1I GGYRCC 4 cut(s) 425, 1156, 1289, 1391
AccII CGCG 1 cut(s) 498
AccIII TCCGGA 1 cut(s) 1060
AciI CCGC 4 cut(s) 102, 463, 945, 1178
AclWI GGATC 5 cut(s) 148, 593, 1370, 1438, 1451
AcoI YGGCCR 2 cut(s) 11, 44
AcuI CTGAAG 3 cut(s) 90, 319, 387
AcyI GRCGYC 3 cut(s) 175, 484, 1157
AdeI CACNNNGTG 1 cut(s) 1256
AfaI GTAC 2 cut(s) 535, 559
AfiI CCNNNNNNNGG 4 cut(s) 70, 71, 355, 1453
AgsI TTSAA 3 cut(s) 860, 1186, 1195
AjnI CCWGG 3 cut(s) 429, 670, 1084
AluBI AGCT 6 cut(s) 89, 119, 407, 842, 995, 1321
AluI AGCT 6 cut(s) 89, 119, 407, 842, 995, 1321
Alw21I GWGCWC 1 cut(s) 1261
Alw26I GTCTC 4 cut(s) 178, 669, 1251, 1291
AlwI GGATC 5 cut(s) 148, 593, 1370, 1438, 1451
Aor13HI TCCGGA 1 cut(s) 1060
AoxI GGCC 4 cut(s) 11, 44, 61, 1235
ApeKI GCWGC 7 cut(s) 4, 89, 211, 286, 289, 292, 953
Asp700I GAANNNNTTC 2 cut(s) 1038, 1128
AspLEI GCGC 2 cut(s) 500, 1159
AspS9I GGNCC 3 cut(s) 62, 74, 366
AsuC2I CCSGG 2 cut(s) 603, 1134
AsuHPI GGTGA 2 cut(s) 713, 718
AsuII TTCGAA 1 cut(s) 877
AvaII GGWCC 2 cut(s) 74, 366
AxyI CCTNAGG 1 cut(s) 1074
BaeGI GKGCMC 1 cut(s) 430
BalI TGGCCA 1 cut(s) 13
BamHI GGATCC 1 cut(s) 1443
BanI GGYRCC 4 cut(s) 425, 1156, 1289, 1391
BarI GAAGNNNNNNTAC 2 cut(s) 858, 890
BauI CACGAG 1 cut(s) 48
BbsI GAAGAC 2 cut(s) 393, 1202
Bbv12I GWGCWC 1 cut(s) 1261
BbvI GCAGC 7 cut(s) 16, 76, 223, 298, 301, 304, 940
BccI CCATC 4 cut(s) 85, 664, 881, 1280
BcgI CGANNNNNNTGC 2 cut(s) 512, 546
BciT130I CCWGG 3 cut(s) 431, 672, 1086
BciVI GTATCC 1 cut(s) 1000
BclI TGATCA 1 cut(s) 1378
BcnI CCSGG 2 cut(s) 603, 1134
BcoDI GTCTC 4 cut(s) 178, 669, 1251, 1291
BfaI CTAG 6 cut(s) 192, 417, 501, 627, 992, 1239
BfmI CTRYAG 1 cut(s) 1119
BfoI RGCGCY 1 cut(s) 1160
BfuAI ACCTGC 1 cut(s) 196
BfuI GTATCC 1 cut(s) 1000
BisI GCNGC 7 cut(s) 5, 90, 212, 287, 290, 293, 954
BlsI GCNGC 7 cut(s) 6, 91, 213, 288, 291, 294, 955
Bme1390I CCNGG 5 cut(s) 431, 603, 672, 1086, 1134
Bme18I GGWCC 2 cut(s) 74, 366
BmgT120I GGNCC 3 cut(s) 62, 74, 366
BmrFI CCNGG 5 cut(s) 431, 603, 672, 1086, 1134
BmrI ACTGGG 1 cut(s) 60
BmuI ACTGGG 1 cut(s) 60
BpiI GAAGAC 2 cut(s) 393, 1202
BplI GAGNNNNNCTC 2 cut(s) 355, 387
BpmI CTGGAG 4 cut(s) 429, 525, 1158, 1245
Bpu14I TTCGAA 1 cut(s) 877
BpuMI CCSGG 2 cut(s) 603, 1134
Bsa29I ATCGAT 1 cut(s) 1365
BsaHI GRCGYC 3 cut(s) 175, 484, 1157
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 8 cut(s) 8, 41, 247, 429, 430, 907, 1250, 1358
BsaWI WCCGGW 3 cut(s) 260, 698, 1060
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 71, 355, 1453
Bse1I ACTGG 3 cut(s) 66, 199, 1262
Bse21I CCTNAGG 1 cut(s) 1074
BseAI TCCGGA 1 cut(s) 1060
BseBI CCWGG 3 cut(s) 431, 672, 1086
BseCI ATCGAT 1 cut(s) 1365
BseDI CCNNGG 8 cut(s) 8, 41, 247, 429, 430, 907, 1250, 1358
BseGI GGATG 6 cut(s) 35, 77, 98, 257, 656, 1069
BseLI CCNNNNNNNGG 4 cut(s) 70, 71, 355, 1453
BseMII CTCAG 5 cut(s) 374, 398, 533, 1065, 1166
BseNI ACTGG 3 cut(s) 66, 199, 1262
BseRI GAGGAG 1 cut(s) 1091
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 7 cut(s) 16, 76, 223, 298, 301, 304, 940
BseYI CCCAGC 1 cut(s) 459
Bsh1236I CGCG 1 cut(s) 498
BshFI GGCC 4 cut(s) 13, 46, 63, 1237
BshNI GGYRCC 4 cut(s) 425, 1156, 1289, 1391
BshVI ATCGAT 1 cut(s) 1365
BsiHKAI GWGCWC 1 cut(s) 1261
BsiSI CCGG 5 cut(s) 261, 603, 699, 1061, 1134
BslFI GGGAC 2 cut(s) 471, 1469
BslI CCNNNNNNNGG 4 cut(s) 70, 71, 355, 1453
BsmAI GTCTC 4 cut(s) 178, 669, 1251, 1291
BsmBI CGTCTC 1 cut(s) 669
BsmFI GGGAC 2 cut(s) 471, 1469
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 4 cut(s) 13, 46, 63, 1237
Bso31I GGTCTC 1 cut(s) 178
Bsp119I TTCGAA 1 cut(s) 877
Bsp1286I GDGCHC 2 cut(s) 430, 1261
Bsp13I TCCGGA 1 cut(s) 1060
Bsp143I GATC 7 cut(s) 140, 598, 1362, 1378, 1421, 1443, 1509
Bsp19I CCATGG 2 cut(s) 8, 247
BspACI CCGC 4 cut(s) 102, 463, 945, 1178
BspANI GGCC 4 cut(s) 13, 46, 63, 1237
BspCNI CTCAG 5 cut(s) 373, 397, 532, 1066, 1165
BspDI ATCGAT 1 cut(s) 1365
BspEI TCCGGA 1 cut(s) 1060
BspFNI CGCG 1 cut(s) 498
BspHI TCATGA 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 196
BspPI GGATC 5 cut(s) 148, 593, 1370, 1438, 1451
BspT104I TTCGAA 1 cut(s) 877
BspT107I GGYRCC 4 cut(s) 425, 1156, 1289, 1391
BspTNI GGTCTC 1 cut(s) 178
BsrI ACTGG 3 cut(s) 66, 199, 1262
BssECI CCNNGG 8 cut(s) 8, 41, 247, 429, 430, 907, 1250, 1358
BssMI GATC 7 cut(s) 140, 598, 1362, 1378, 1421, 1443, 1509
BssNI GRCGYC 3 cut(s) 175, 484, 1157
BssSI CACGAG 1 cut(s) 48
BssT1I CCWWGG 3 cut(s) 8, 247, 907
Bst2BI CACGAG 1 cut(s) 48
Bst2UI CCWGG 3 cut(s) 431, 672, 1086
Bst4CI ACNGT 1 cut(s) 1336
Bst6I CTCTTC 1 cut(s) 672
BstACI GRCGYC 3 cut(s) 175, 484, 1157
BstBI TTCGAA 1 cut(s) 877
BstC8I GCNNGC 2 cut(s) 510, 582
BstDEI CTNAG 5 cut(s) 360, 384, 519, 1074, 1152
BstDSI CCRYGG 3 cut(s) 8, 247, 1250
BstF5I GGATG 6 cut(s) 35, 77, 98, 257, 656, 1069
BstFNI CGCG 1 cut(s) 498
BstH2I RGCGCY 1 cut(s) 1160
BstHHI GCGC 2 cut(s) 500, 1159
BstKTI GATC 7 cut(s) 143, 601, 1365, 1381, 1424, 1446, 1512
BstMAI GTCTC 4 cut(s) 178, 669, 1251, 1291
BstMBI GATC 7 cut(s) 140, 598, 1362, 1378, 1421, 1443, 1509
BstMWI GCNNNNNNNGC 9 cut(s) 10, 220, 292, 644, 839, 953, 992, 1090, 1469
BstNI CCWGG 3 cut(s) 431, 672, 1086
BstNSI RCATGY 3 cut(s) 512, 686, 1246
BstSCI CCNGG 5 cut(s) 429, 601, 670, 1084, 1132
BstSFI CTRYAG 1 cut(s) 1119
BstSLI GKGCMC 1 cut(s) 430
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 7 cut(s) 16, 76, 223, 298, 301, 304, 940
BstV2I GAAGAC 2 cut(s) 393, 1202
BstX2I RGATCY 1 cut(s) 1443
BstXI CCANNNNNNTGG 1 cut(s) 678
BstYI RGATCY 1 cut(s) 1443
Bsu15I ATCGAT 1 cut(s) 1365
Bsu36I CCTNAGG 1 cut(s) 1074
BsuI GTATCC 1 cut(s) 1000
BsuRI GGCC 4 cut(s) 13, 46, 63, 1237
BsuTUI ATCGAT 1 cut(s) 1365
BtgI CCRYGG 3 cut(s) 8, 247, 1250
BtsCI GGATG 6 cut(s) 35, 77, 98, 257, 656, 1069
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 3 cut(s) 442, 1269, 1341
BveI ACCTGC 1 cut(s) 196
Cac8I GCNNGC 2 cut(s) 510, 582
CciI TCATGA 1 cut(s) 325
CfoI GCGC 2 cut(s) 500, 1159
Cfr13I GGNCC 3 cut(s) 62, 74, 366
ClaI ATCGAT 1 cut(s) 1365
Csp6I GTAC 2 cut(s) 534, 558
CviQI GTAC 2 cut(s) 534, 558
DdeI CTNAG 5 cut(s) 360, 384, 519, 1074, 1152
DinI GGCGCC 1 cut(s) 1158
DpnI GATC 7 cut(s) 142, 600, 1364, 1380, 1423, 1445, 1511
DpnII GATC 7 cut(s) 140, 598, 1362, 1378, 1421, 1443, 1509
DraIII CACNNNGTG 1 cut(s) 1256
EaeI YGGCCR 2 cut(s) 11, 44
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Eco130I CCWWGG 3 cut(s) 8, 247, 907
Eco31I GGTCTC 1 cut(s) 178
Eco47I GGWCC 2 cut(s) 74, 366
Eco57I CTGAAG 3 cut(s) 90, 319, 387
Eco81I CCTNAGG 1 cut(s) 1074
EcoRII CCWGG 3 cut(s) 429, 670, 1084
EcoT14I CCWWGG 3 cut(s) 8, 247, 907
EcoT22I ATGCAT 1 cut(s) 1307
EgeI GGCGCC 1 cut(s) 1158
EheI GGCGCC 1 cut(s) 1158
ErhI CCWWGG 3 cut(s) 8, 247, 907
Esp3I CGTCTC 1 cut(s) 669
FalI AAGNNNNNCTT 2 cut(s) 1026, 1058
FaqI GGGAC 2 cut(s) 471, 1469
FauI CCCGC 1 cut(s) 456
FbaI TGATCA 1 cut(s) 1378
Fnu4HI GCNGC 7 cut(s) 5, 90, 212, 287, 290, 293, 954
FokI GGATG 6 cut(s) 42, 64, 85, 244, 643, 1076
Fsp4HI GCNGC 7 cut(s) 5, 90, 212, 287, 290, 293, 954
FspBI CTAG 6 cut(s) 192, 417, 501, 627, 992, 1239
GlaI GCGC 2 cut(s) 499, 1158
GluI GCNGC 7 cut(s) 5, 90, 212, 287, 290, 293, 954
GsaI CCCAGC 1 cut(s) 463
GsuI CTGGAG 4 cut(s) 429, 525, 1158, 1245
HaeII RGCGCY 1 cut(s) 1160
HaeIII GGCC 4 cut(s) 13, 46, 63, 1237
HapII CCGG 5 cut(s) 261, 603, 699, 1061, 1134
HhaI GCGC 2 cut(s) 500, 1159
Hin1I GRCGYC 3 cut(s) 175, 484, 1157
Hin6I GCGC 2 cut(s) 498, 1157
HinP1I GCGC 2 cut(s) 498, 1157
HinfI GANTC 5 cut(s) 19, 493, 517, 1198, 1324
HpaII CCGG 5 cut(s) 261, 603, 699, 1061, 1134
HphI GGTGA 2 cut(s) 713, 718
Hpy166II GTNNAC 1 cut(s) 482
Hpy188I TCNGA 4 cut(s) 363, 449, 1362, 1448
Hpy188III TCNNGA 9 cut(s) 326, 337, 542, 884, 1061, 1073, 1482, 1507, 1518
Hpy8I GTNNAC 1 cut(s) 482
HpyAV CCTTC 1 cut(s) 746
HpyCH4III ACNGT 1 cut(s) 1336
HpyCH4IV ACGT 3 cut(s) 175, 484, 560
HpyCH4V TGCA 7 cut(s) 4, 508, 936, 956, 1100, 1207, 1305
HpyF10VI GCNNNNNNNGC 9 cut(s) 10, 220, 292, 644, 839, 953, 992, 1090, 1469
HpyF3I CTNAG 5 cut(s) 360, 384, 519, 1074, 1152
HpySE526I ACGT 3 cut(s) 175, 484, 560
Hsp92I GRCGYC 3 cut(s) 175, 484, 1157
HspAI GCGC 2 cut(s) 498, 1157
KasI GGCGCC 1 cut(s) 1156
Kpn2I TCCGGA 1 cut(s) 1060
Ksp22I TGATCA 1 cut(s) 1378
Kzo9I GATC 7 cut(s) 140, 598, 1362, 1378, 1421, 1443, 1509
LmnI GCTCC 5 cut(s) 195, 461, 605, 1177, 1264
Lsp1109I GCAGC 7 cut(s) 16, 76, 223, 298, 301, 304, 940
MaeI CTAG 6 cut(s) 192, 417, 501, 627, 992, 1239
MaeII ACGT 3 cut(s) 175, 484, 560
MaeIII GTNAC 4 cut(s) 176, 1330, 1437, 1479
MalI GATC 7 cut(s) 142, 600, 1364, 1380, 1423, 1445, 1511
MboI GATC 7 cut(s) 140, 598, 1362, 1378, 1421, 1443, 1509
MboII GAAGA 6 cut(s) 393, 659, 1046, 1207, 1291, 1351
MfeI CAATTG 1 cut(s) 1202
MflI RGATCY 1 cut(s) 1443
MhlI GDGCHC 2 cut(s) 430, 1261
MlsI TGGCCA 1 cut(s) 13
MluCI AATT 8 cut(s) 594, 718, 777, 939, 962, 1124, 1181, 1202
MluNI TGGCCA 1 cut(s) 13
Mly113I GGCGCC 1 cut(s) 1157
MlyI GAGTC 4 cut(s) 28, 487, 511, 1192
Mox20I TGGCCA 1 cut(s) 13
Mph1103I ATGCAT 1 cut(s) 1307
MroI TCCGGA 1 cut(s) 1060
MroXI GAANNNNTTC 2 cut(s) 1038, 1128
MscI TGGCCA 1 cut(s) 13
MseI TTAA 3 cut(s) 593, 776, 1275
MslI CAYNNNNRTG 1 cut(s) 648
Msp20I TGGCCA 1 cut(s) 13
MspA1I CMGCKG 5 cut(s) 119, 407, 463, 947, 1178
MspI CCGG 5 cut(s) 261, 603, 699, 1061, 1134
MspR9I CCNGG 5 cut(s) 431, 603, 672, 1086, 1134
MunI CAATTG 1 cut(s) 1202
Mva1269I GAATGC 1 cut(s) 613
MvaI CCWGG 3 cut(s) 431, 672, 1086
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 9 cut(s) 10, 220, 292, 644, 839, 953, 992, 1090, 1469
NarI GGCGCC 1 cut(s) 1157
NciI CCSGG 2 cut(s) 603, 1134
NcoI CCATGG 2 cut(s) 8, 247
NdeII GATC 7 cut(s) 140, 598, 1362, 1378, 1421, 1443, 1509
NmeAIII GCCGAG 1 cut(s) 22
NmuCI GTSAC 3 cut(s) 176, 1330, 1479
NsiI ATGCAT 1 cut(s) 1307
NspI RCATGY 3 cut(s) 512, 686, 1246
NspV TTCGAA 1 cut(s) 877
PaeI GCATGC 1 cut(s) 512
PagI TCATGA 1 cut(s) 325
PasI CCCWGGG 1 cut(s) 430
PctI GAATGC 1 cut(s) 613
PdmI GAANNNNTTC 2 cut(s) 1038, 1128
PfeI GAWTC 1 cut(s) 1324
PfoI TCCNGGA 2 cut(s) 601, 1132
PkrI GCNGC 7 cut(s) 6, 91, 213, 288, 291, 294, 955
PleI GAGTC 4 cut(s) 27, 487, 511, 1192
PluTI GGCGCC 1 cut(s) 1160
PpsI GAGTC 4 cut(s) 27, 487, 511, 1192
Psp6I CCWGG 3 cut(s) 429, 670, 1084
PspFI CCCAGC 1 cut(s) 459
PspGI CCWGG 3 cut(s) 429, 670, 1084
PspPI GGNCC 3 cut(s) 62, 74, 366
PsuI RGATCY 1 cut(s) 1443
PvuII CAGCTG 2 cut(s) 119, 407
RsaI GTAC 2 cut(s) 535, 559
RsaNI GTAC 2 cut(s) 534, 558
RseI CAYNNNNRTG 1 cut(s) 648
SaqAI TTAA 3 cut(s) 593, 776, 1275
SatI GCNGC 7 cut(s) 5, 90, 212, 287, 290, 293, 954
Sau3AI GATC 7 cut(s) 140, 598, 1362, 1378, 1421, 1443, 1509
Sau96I GGNCC 3 cut(s) 62, 74, 366
SchI GAGTC 4 cut(s) 28, 487, 511, 1192
ScrFI CCNGG 5 cut(s) 431, 603, 672, 1086, 1134
SduI GDGCHC 2 cut(s) 430, 1261
SfcI CTRYAG 1 cut(s) 1119
SfoI GGCGCC 1 cut(s) 1158
SfuI TTCGAA 1 cut(s) 877
SinI GGWCC 2 cut(s) 74, 366
SmiMI CAYNNNNRTG 1 cut(s) 648
SphI GCATGC 1 cut(s) 512
Sse9I AATT 8 cut(s) 594, 718, 777, 939, 962, 1124, 1181, 1202
SsiI CCGC 4 cut(s) 102, 463, 945, 1178
SspDI GGCGCC 1 cut(s) 1156
SspMI CTAG 6 cut(s) 192, 417, 501, 627, 992, 1239
StyD4I CCNGG 5 cut(s) 429, 601, 670, 1084, 1132
StyI CCWWGG 3 cut(s) 8, 247, 907
TaaI ACNGT 1 cut(s) 1336
TaiI ACGT 3 cut(s) 178, 487, 563
TaqI TCGA 3 cut(s) 765, 877, 1365
TaqII GACCGA 2 cut(s) 433, 1467
TasI AATT 8 cut(s) 594, 718, 777, 939, 962, 1124, 1181, 1202
TfiI GAWTC 1 cut(s) 1324
Tru1I TTAA 3 cut(s) 593, 776, 1275
Tru9I TTAA 3 cut(s) 593, 776, 1275
TscAI CASTG 3 cut(s) 442, 1269, 1341
TseFI GTSAC 3 cut(s) 176, 1330, 1479
TseI GCWGC 7 cut(s) 4, 89, 211, 286, 289, 292, 953
Tsp45I GTSAC 3 cut(s) 176, 1330, 1479
TspDTI ATGAA 4 cut(s) 84, 102, 606, 610
TspGWI ACGGA 2 cut(s) 1341, 1456
TspRI CASTG 3 cut(s) 442, 1269, 1341
VpaK11BI GGWCC 2 cut(s) 74, 366
XceI RCATGY 3 cut(s) 512, 686, 1246
XcmI CCANNNNNNNNNTGG 2 cut(s) 21, 467
XmnI GAANNNNTTC 2 cut(s) 1038, 1128
XspI CTAG 6 cut(s) 192, 417, 501, 627, 992, 1239
ZraI GACGTC 2 cut(s) 176, 485
Zsp2I ATGCAT 1 cut(s) 1307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.