FvH4_4g10033

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000094
Physical Location & Seq
Reverse (-)
12554525 .. 12557263
2739 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10033.t1

Sequence Viewer

Length: 2628 bp
ATGTCAAAGAGGGACGATGAGGGTATCTTAGAGTTTCAGGAAAGATTCACTTCCCTGAGCTACCATGTGTCATATCTGGTTTCTGATGAGAGGACCAGGATTGAGATGTTCATTGGGGTACTTGGTGGAGTGTATGCGGACAAGATGACATGGGTAATTTACCCGACTTTTGAGGATGCAGTTGGTGCAGCCATGGCCATTGAGTTTAGGGGGACATATGGTGTTCGGCCTCGTGATTACGGTGGCCCTAGTCAAGGTCCATCTAAGAAGGCTGCTACATCATCCGCTTCTGGGTCTTCTGCTGGTAGTGGCAGTAGTGGGGGATCGAGCTCTGGTGCTCGAAACAGGACTAGAGGATGTTTCAGGAGACCTTCTCGGAGTCATTTGGGTAGGCAGCAGTCTGGGCAGAGAGATTGCCCATTGTTGGCTCAGAGGACCACCCCCACCCCTACTCAGCCAGTTGGTCAGTCTTCAGCTGGAGGCTCCAGTAGTGGTGCCCAGGGCAGTGCATCGGTCAGAGGTGGCTCTCAGCGGGGTGGTGGTCAGCATAGACGTCCCATGACTCGCGCTAGACTACATACTATGACCCAGCAGGAGGGTCGTACTTCTCCAGATGTCATCATTGGTACGTTATTAATTTTCGGTCAGCCTGCTTTTACTTTAATTGATCCAGGAGCCACGCATTCATTCATGTCTAGTAGATTCGCTCTCCATGCCAATGTGCTATCATCGTCTCTTCCAGGCGAGTGGCATGTGTCTCTACCCTCCGGTGAGGTGATGAGAATAAATTGGGTATTTAGTGGTTGTGAAGTTTTAGTGGAAGGAGTTAATTTTGAGGCTGATTTAATTCCTTTAGATATAGTGGAGTTTGATGTGATCTTGGGAATGGACTTTTTGGAAGCATATAGAGCTATGGTAGATTGTTTTCAAAAAGTAGTGGTGCTTCGAAGTCCAGATGGTTTTGAGGTTGCTTTCCAAGGGGAAAGAGATGTTATTTCTAGTTGCATAATTTCCGCTGTTGCTACAAGGAAATTGTTGAGTAAAGGCTGTCAGGCATATTTAGCTCATGTCGTGGATACAATTATGGGAGTTGTGGGATTAGAAGATATTCCGGTAGTAAGGGAGTTTCCGGATGTTTTTCCTGAGGAGTTGCCTGGTTTGCCTCCTGCAAGGGAGATAGACTTCTCTATAGAATTACTTCCTGGAACTATATCTATCTCTCAGGCACCTTACAAAATGGCTCCAGCGGAATTGAAAGAGTTGAAGACTCAATTGCAGAAGTTGGTACATAAGGGTTTTATTCGGCCTAGCATGTCTCCATGGGGTGCTCCGGTGTTGTTTGTTAAGAAGAAAGACGGCACCATGAGACTATGCATTGATTATAGGAAGTTGAATCAGGTCACAGTGAAGAATAAATATCCGTTGCCTCGGATCGATGATTTATTTGATCAGTTGACGGGTGCCTCTGTTTTCTCTAAGATTGATTTGAGATCGGGTTATCATCAGTTGCGGATCCGAGAGGGGGACATAGCCAAGACTGCTTTTCGGTCACGATATGGTCATTATGAGTTTATGGTGATGCTATTTGGACTTACTAATGCACCCGTGGCGTTCATGGATCTCATGAATAGGGTGTTTAGTCCATATCTTGATCGTTTCGTGATCGTATTCATAGATGACATATTGGTTTACTCAAGAAGTGAGAAGGAGCATGCCAAGCATCTAAGAATAATATTACGGACTTTGGAAAAGTCGCAGTTATTTGCTAAGTTTAGCAAGTGTGAGTTTTGGCTAGATAAAGAGGGGTTTTTGGGTCATGTGATTTCGGTAGAAGGAGTTAGTGGGGATCCCCAAAAGGTGAAAGCAGTGTCGAATTGGAGAAGACCCACCACTGTGATGGAGATTCGTAGTTTCTTGGGATTAGTAGGTTATTATCGGCGCTTTGTGAAAGATTTTTCAAAGATTGTTGCTCCTCTCACAAGATTGACCAGGAAGAGGGTTAAGTTTGAATGGTCAGATCAATGTGAGCAAAGTTTCCAAGAATTGAAGAATTGCTTAACAAGTGCTCCTGTTTTGGCACTTCCGGATGATAGTGGAGAGTATGTGATCTATTGTGATGCTTCTAGACATGGTCTAGGTGGAGTATTGATGCAGCATGGACGAGTTATTGCCTACGCTTCTAGGCAATTAAAGCCGCATGAGGGGAATTATCCTACTCATGATCTGGAGCTTGCAGCGGTAGTTTTTGCTCTCAAGTTGTGGAAACACTATCTTTATGGAGGCAAGTGTCAGATATTTACCGATCACAAGAGTCTTCGGTATGTATTCACTCAAAGAGAGCTAAATATGGGACAGAGAAGGTGGATGGAGTTAATCAATGATTATGATTGCACTATTGAGTATCACCCTGGAAAAGCTAATGTGGTAGCGGATGCTCTTAGTCGAAATCCCTCTATATCTTTATCTCATATAAAGATGGTTCGTGTTCCGCTTCTTTGTGAGTTGCAAGCTACAGGAGTGGATTTATCAGTAGATGAGGTTGGTGCTTTGATAGCCAGTTTTCATGTGAGGCCAGTTTTGGTTGATAGAGTGCGGGAAGCACAGTATAATGATCCTTCCATAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

876

Amino Acids

97.61

Weight (kDa)

8.89

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVP_2 PF08284 187 - 317 5e-33 Retroviral aspartyl protease
RVT_1 PF00078 448 - 607 5.3e-33 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 671 - 764 4e-32 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 697 - 795 9.9e-31 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 556
AccB1I GGYRCC 4 cut(s) 494, 1225, 1358, 1460
AccII CGCG 1 cut(s) 567
AccIII TCCGGA 2 cut(s) 1129, 2083
AclWI GGATC 9 cut(s) 331, 662, 1439, 1507, 1520, 1626, 1841, 1854, 2606
AcoI YGGCCR 1 cut(s) 195
AcuI CTGAAG 1 cut(s) 456
AcyI GRCGYC 1 cut(s) 553
AfaI GTAC 4 cut(s) 120, 604, 628, 1287
AfiI CCNNNNNNNGG 7 cut(s) 254, 291, 424, 595, 1522, 1995, 2201
AgsI TTSAA 7 cut(s) 929, 1255, 1264, 1393, 1959, 2009, 2047
AjnI CCWGG 8 cut(s) 95, 498, 670, 739, 1153, 1201, 1988, 2407
AleI CACNNNNGTG 1 cut(s) 1892
AluBI AGCT 9 cut(s) 60, 330, 476, 911, 1064, 2230, 2341, 2417, 2510
AluI AGCT 9 cut(s) 60, 330, 476, 911, 1064, 2230, 2341, 2417, 2510
Alw21I GWGCWC 4 cut(s) 332, 340, 1330, 2068
Alw26I GTCTC 5 cut(s) 361, 738, 762, 1320, 1360
AlwI GGATC 9 cut(s) 331, 662, 1439, 1507, 1520, 1626, 1841, 1854, 2606
Aor13HI TCCGGA 2 cut(s) 1129, 2083
AoxI GGCC 5 cut(s) 195, 227, 244, 1304, 2570
ApeKI GCWGC 5 cut(s) 188, 272, 394, 2152, 2234
AseI ATTAAT 1 cut(s) 635
Asp700I GAANNNNTTC 2 cut(s) 1107, 1197
AspLEI GCGC 2 cut(s) 569, 1941
AspS9I GGNCC 4 cut(s) 93, 245, 257, 435
AsuHPI GGTGA 5 cut(s) 782, 787, 1588, 1870, 2396
AsuII TTCGAA 1 cut(s) 946
AvaII GGWCC 3 cut(s) 93, 257, 435
AxyI CCTNAGG 1 cut(s) 1143
BaeGI GKGCMC 1 cut(s) 499
BalI TGGCCA 1 cut(s) 197
BamHI GGATCC 2 cut(s) 1512, 1846
BanI GGYRCC 4 cut(s) 494, 1225, 1358, 1460
BanII GRGCYC 1 cut(s) 332
BarI GAAGNNNNNNTAC 2 cut(s) 927, 959
BauI CACGAG 1 cut(s) 231
BbsI GAAGAC 5 cut(s) 288, 462, 1271, 1888, 2306
Bbv12I GWGCWC 4 cut(s) 332, 340, 1330, 2068
BbvI GCAGC 5 cut(s) 200, 259, 406, 2164, 2246
BccI CCATC 5 cut(s) 268, 950, 1891, 2359, 2470
BceAI ACGGC 1 cut(s) 1372
BcgI CGANNNNNNTGC 2 cut(s) 581, 615
BciT130I CCWGG 8 cut(s) 97, 500, 672, 741, 1155, 1203, 1990, 2409
BciVI GTATCC 1 cut(s) 1069
BclI TGATCA 1 cut(s) 1447
BcoDI GTCTC 5 cut(s) 361, 738, 762, 1320, 1360
BfmI CTRYAG 2 cut(s) 1188, 2511
BfoI RGCGCY 1 cut(s) 1942
BfuI GTATCC 1 cut(s) 1069
BisI GCNGC 6 cut(s) 189, 273, 395, 2153, 2195, 2235
BlsI GCNGC 6 cut(s) 190, 274, 396, 2154, 2196, 2236
Bme1390I CCNGG 8 cut(s) 97, 500, 672, 741, 1155, 1203, 1990, 2409
Bme18I GGWCC 3 cut(s) 93, 257, 435
BmgT120I GGNCC 4 cut(s) 93, 245, 257, 435
BmiI GGNNCC 9 cut(s) 484, 496, 676, 1227, 1242, 1360, 1462, 1514, 1848
BmrFI CCNGG 8 cut(s) 97, 500, 672, 741, 1155, 1203, 1990, 2409
BmsI GCATC 7 cut(s) 166, 518, 1569, 1729, 2107, 2139, 2422
BpiI GAAGAC 5 cut(s) 288, 462, 1271, 1888, 2306
BplI GAGNNNNNCTC 2 cut(s) 358, 390
BpmI CTGGAG 5 cut(s) 469, 498, 594, 1227, 2246
Bpu10I CCTNAGC 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 946
BpuEI CTTGAG 2 cut(s) 1678, 2237
Bsa29I ATCGAT 1 cut(s) 1434
BsaHI GRCGYC 1 cut(s) 553
BsaI GGTCTC 1 cut(s) 361
BsaJI CCNNGG 8 cut(s) 192, 498, 499, 976, 1319, 1427, 1605, 2407
BsaWI WCCGGW 5 cut(s) 767, 1111, 1129, 1330, 2083
BsaXI ACNNNNNCTCC 4 cut(s) 2050, 2080, 2088, 2118
Bsc4I CCNNNNNNNGG 7 cut(s) 254, 291, 424, 595, 1522, 1995, 2201
Bse1I ACTGG 4 cut(s) 458, 486, 2556, 2573
Bse21I CCTNAGG 1 cut(s) 1143
BseAI TCCGGA 2 cut(s) 1129, 2083
BseBI CCWGG 8 cut(s) 97, 500, 672, 741, 1155, 1203, 1990, 2409
BseCI ATCGAT 1 cut(s) 1434
BseDI CCNNGG 8 cut(s) 192, 498, 499, 976, 1319, 1427, 1605, 2407
BseGI GGATG 7 cut(s) 181, 281, 362, 1138, 2092, 2370, 2437
BseLI CCNNNNNNNGG 7 cut(s) 254, 291, 424, 595, 1522, 1995, 2201
BseMII CTCAG 6 cut(s) 47, 443, 467, 542, 1134, 1235
BseNI ACTGG 4 cut(s) 458, 486, 2556, 2573
BseRI GAGGAG 2 cut(s) 1160, 1962
BseSI GKGCMC 1 cut(s) 499
BseXI GCAGC 5 cut(s) 200, 259, 406, 2164, 2246
BseYI CCCAGC 1 cut(s) 588
BsgI GTGCAG 1 cut(s) 207
Bsh1236I CGCG 1 cut(s) 567
BshFI GGCC 5 cut(s) 197, 229, 246, 1306, 2572
BshNI GGYRCC 4 cut(s) 494, 1225, 1358, 1460
BshVI ATCGAT 1 cut(s) 1434
BsiHKAI GWGCWC 4 cut(s) 332, 340, 1330, 2068
BsiSI CCGG 5 cut(s) 768, 1112, 1130, 1331, 2084
BslFI GGGAC 5 cut(s) 26, 226, 540, 1538, 2364
BslI CCNNNNNNNGG 7 cut(s) 254, 291, 424, 595, 1522, 1995, 2201
BsmAI GTCTC 5 cut(s) 361, 738, 762, 1320, 1360
BsmBI CGTCTC 1 cut(s) 738
BsmFI GGGAC 5 cut(s) 26, 226, 540, 1538, 2364
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 5 cut(s) 197, 229, 246, 1306, 2572
Bso31I GGTCTC 1 cut(s) 361
Bsp119I TTCGAA 1 cut(s) 946
Bsp1286I GDGCHC 5 cut(s) 332, 340, 499, 1330, 2068
Bsp13I TCCGGA 2 cut(s) 1129, 2083
Bsp19I CCATGG 2 cut(s) 192, 1319
BspANI GGCC 5 cut(s) 197, 229, 246, 1306, 2572
BspCNI CTCAG 6 cut(s) 48, 442, 466, 541, 1135, 1234
BspDI ATCGAT 1 cut(s) 1434
BspEI TCCGGA 2 cut(s) 1129, 2083
BspFNI CGCG 1 cut(s) 567
BspHI TCATGA 2 cut(s) 1623, 2218
BspLI GGNNCC 9 cut(s) 484, 496, 676, 1227, 1242, 1360, 1462, 1514, 1848
BspPI GGATC 9 cut(s) 331, 662, 1439, 1507, 1520, 1626, 1841, 1854, 2606
BspT104I TTCGAA 1 cut(s) 946
BspT107I GGYRCC 4 cut(s) 494, 1225, 1358, 1460
BspTNI GGTCTC 1 cut(s) 361
BsrI ACTGG 4 cut(s) 458, 486, 2556, 2573
BssECI CCNNGG 8 cut(s) 192, 498, 499, 976, 1319, 1427, 1605, 2407
BssNI GRCGYC 1 cut(s) 553
BssSI CACGAG 1 cut(s) 231
BssT1I CCWWGG 3 cut(s) 192, 976, 1319
Bst2BI CACGAG 1 cut(s) 231
Bst2UI CCWGG 8 cut(s) 97, 500, 672, 741, 1155, 1203, 1990, 2409
Bst4CI ACNGT 4 cut(s) 242, 1405, 1894, 2604
Bst6I CTCTTC 2 cut(s) 741, 1988
BstACI GRCGYC 1 cut(s) 553
BstAPI GCANNNNNTGC 1 cut(s) 185
BstBI TTCGAA 1 cut(s) 946
BstC8I GCNNGC 4 cut(s) 651, 1713, 2232, 2508
BstDSI CCRYGG 3 cut(s) 192, 1319, 1605
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 7 cut(s) 181, 281, 362, 1138, 2092, 2370, 2437
BstFNI CGCG 1 cut(s) 567
BstH2I RGCGCY 1 cut(s) 1942
BstHHI GCGC 2 cut(s) 569, 1941
BstMAI GTCTC 5 cut(s) 361, 738, 762, 1320, 1360
BstNI CCWGG 8 cut(s) 97, 500, 672, 741, 1155, 1203, 1990, 2409
BstNSI RCATGY 3 cut(s) 755, 1315, 1715
BstSCI CCNGG 8 cut(s) 95, 498, 670, 739, 1153, 1201, 1988, 2407
BstSFI CTRYAG 2 cut(s) 1188, 2511
BstSLI GKGCMC 1 cut(s) 499
BstUI CGCG 1 cut(s) 567
BstV1I GCAGC 5 cut(s) 200, 259, 406, 2164, 2246
BstV2I GAAGAC 5 cut(s) 288, 462, 1271, 1888, 2306
BstX2I RGATCY 3 cut(s) 1512, 1618, 1846
BstXI CCANNNNNNTGG 2 cut(s) 747, 1897
BstYI RGATCY 3 cut(s) 1512, 1618, 1846
Bsu15I ATCGAT 1 cut(s) 1434
Bsu36I CCTNAGG 1 cut(s) 1143
BsuI GTATCC 1 cut(s) 1069
BsuRI GGCC 5 cut(s) 197, 229, 246, 1306, 2572
BsuTUI ATCGAT 1 cut(s) 1434
BtgI CCRYGG 3 cut(s) 192, 1319, 1605
BtsCI GGATG 7 cut(s) 181, 281, 362, 1138, 2092, 2370, 2437
BtsI GCAGTG 2 cut(s) 511, 1872
BtsIMutI CAGTG 4 cut(s) 511, 1410, 1872, 1890
Cac8I GCNNGC 4 cut(s) 651, 1713, 2232, 2508
CciI TCATGA 2 cut(s) 1623, 2218
CfoI GCGC 2 cut(s) 569, 1941
Cfr13I GGNCC 4 cut(s) 93, 245, 257, 435
ClaI ATCGAT 1 cut(s) 1434
Csp6I GTAC 4 cut(s) 119, 603, 627, 1286
CviQI GTAC 4 cut(s) 119, 603, 627, 1286
EaeI YGGCCR 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 741, 1988
EarI CTCTTC 2 cut(s) 741, 1988
Ecl136II GAGCTC 1 cut(s) 330
Eco130I CCWWGG 3 cut(s) 192, 976, 1319
Eco24I GRGCYC 1 cut(s) 332
Eco31I GGTCTC 1 cut(s) 361
Eco47I GGWCC 3 cut(s) 93, 257, 435
Eco53kI GAGCTC 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 456
Eco81I CCTNAGG 1 cut(s) 1143
EcoICRI GAGCTC 1 cut(s) 330
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoRII CCWGG 8 cut(s) 95, 498, 670, 739, 1153, 1201, 1988, 2407
EcoT14I CCWWGG 3 cut(s) 192, 976, 1319
EcoT22I ATGCAT 1 cut(s) 1376
EcoT38I GRGCYC 1 cut(s) 332
ErhI CCWWGG 3 cut(s) 192, 976, 1319
Esp3I CGTCTC 1 cut(s) 738
FalI AAGNNNNNCTT 4 cut(s) 34, 66, 2039, 2071
FaqI GGGAC 5 cut(s) 26, 226, 540, 1538, 2364
FauI CCCGC 2 cut(s) 525, 2586
FauNDI CATATG 1 cut(s) 217
FbaI TGATCA 1 cut(s) 1447
Fnu4HI GCNGC 6 cut(s) 189, 273, 395, 2153, 2195, 2235
FokI GGATG 7 cut(s) 188, 268, 369, 1145, 2099, 2377, 2444
FriOI GRGCYC 1 cut(s) 332
Fsp4HI GCNGC 6 cut(s) 189, 273, 395, 2153, 2195, 2235
GlaI GCGC 2 cut(s) 568, 1940
GluI GCNGC 6 cut(s) 189, 273, 395, 2153, 2195, 2235
GsaI CCCAGC 1 cut(s) 592
GsuI CTGGAG 5 cut(s) 469, 498, 594, 1227, 2246
HaeII RGCGCY 1 cut(s) 1942
HaeIII GGCC 5 cut(s) 197, 229, 246, 1306, 2572
HapII CCGG 5 cut(s) 768, 1112, 1130, 1331, 2084
HhaI GCGC 2 cut(s) 569, 1941
Hin1I GRCGYC 1 cut(s) 553
Hin6I GCGC 2 cut(s) 567, 1939
HinP1I GCGC 2 cut(s) 567, 1939
HincII GTYRAC 1 cut(s) 1455
HindII GTYRAC 1 cut(s) 1455
HinfI GANTC 8 cut(s) 45, 379, 562, 702, 1267, 1393, 1903, 2311
HpaII CCGG 5 cut(s) 768, 1112, 1130, 1331, 2084
HphI GGTGA 5 cut(s) 782, 787, 1588, 1870, 2396
Hpy166II GTNNAC 2 cut(s) 1455, 1690
Hpy188I TCNGA 8 cut(s) 85, 378, 432, 518, 1431, 1517, 2017, 2292
Hpy8I GTNNAC 2 cut(s) 1455, 1690
HpyAV CCTTC 7 cut(s) 262, 381, 815, 1699, 1826, 2352, 2625
HpyCH4III ACNGT 4 cut(s) 242, 1405, 1894, 2604
HpyCH4IV ACGT 2 cut(s) 553, 629
HpySE526I ACGT 2 cut(s) 553, 629
Hsp92I GRCGYC 1 cut(s) 553
HspAI GCGC 2 cut(s) 567, 1939
Kpn2I TCCGGA 2 cut(s) 1129, 2083
Ksp22I TGATCA 1 cut(s) 1447
LmnI GCTCC 8 cut(s) 488, 674, 1246, 1333, 1708, 1975, 2071, 2227
Lsp1109I GCAGC 5 cut(s) 200, 259, 406, 2164, 2246
LweI GCATC 7 cut(s) 166, 518, 1569, 1729, 2107, 2139, 2422
MaeII ACGT 2 cut(s) 553, 629
MaeIII GTNAC 2 cut(s) 1399, 1548
MfeI CAATTG 1 cut(s) 1271
MflI RGATCY 3 cut(s) 1512, 1618, 1846
MhlI GDGCHC 5 cut(s) 332, 340, 499, 1330, 2068
MlsI TGGCCA 1 cut(s) 197
MluNI TGGCCA 1 cut(s) 197
MlyI GAGTC 4 cut(s) 388, 556, 1261, 2320
Mox20I TGGCCA 1 cut(s) 197
Mph1103I ATGCAT 1 cut(s) 1376
MroI TCCGGA 2 cut(s) 1129, 2083
MroXI GAANNNNTTC 2 cut(s) 1107, 1197
MscI TGGCCA 1 cut(s) 197
MseI TTAA 9 cut(s) 635, 662, 828, 845, 1344, 2001, 2057, 2189, 2372
MslI CAYNNNNRTG 3 cut(s) 717, 1892, 1895
Msp20I TGGCCA 1 cut(s) 197
MspA1I CMGCKG 5 cut(s) 476, 532, 1016, 1247, 2237
MspI CCGG 5 cut(s) 768, 1112, 1130, 1331, 2084
MspR9I CCNGG 8 cut(s) 97, 500, 672, 741, 1155, 1203, 1990, 2409
MunI CAATTG 1 cut(s) 1271
Mva1269I GAATGC 1 cut(s) 682
MvaI CCWGG 8 cut(s) 97, 500, 672, 741, 1155, 1203, 1990, 2409
MvnI CGCG 1 cut(s) 567
NcoI CCATGG 2 cut(s) 192, 1319
NdeI CATATG 1 cut(s) 217
NlaIV GGNNCC 9 cut(s) 484, 496, 676, 1227, 1242, 1360, 1462, 1514, 1848
NmuCI GTSAC 2 cut(s) 1399, 1548
NsiI ATGCAT 1 cut(s) 1376
NspI RCATGY 3 cut(s) 755, 1315, 1715
NspV TTCGAA 1 cut(s) 946
OliI CACNNNNGTG 1 cut(s) 1892
PaeI GCATGC 1 cut(s) 1715
PagI TCATGA 2 cut(s) 1623, 2218
PasI CCCWGGG 1 cut(s) 499
PctI GAATGC 1 cut(s) 682
PdmI GAANNNNTTC 2 cut(s) 1107, 1197
PfeI GAWTC 4 cut(s) 45, 702, 1393, 1903
PflFI GACNNNGTC 1 cut(s) 2130
PfoI TCCNGGA 2 cut(s) 670, 1201
PkrI GCNGC 6 cut(s) 190, 274, 396, 2154, 2196, 2236
PleI GAGTC 4 cut(s) 387, 556, 1261, 2319
PpsI GAGTC 4 cut(s) 387, 556, 1261, 2319
PshBI ATTAAT 1 cut(s) 635
Psp124BI GAGCTC 1 cut(s) 332
Psp6I CCWGG 8 cut(s) 95, 498, 670, 739, 1153, 1201, 1988, 2407
PspFI CCCAGC 1 cut(s) 588
PspGI CCWGG 8 cut(s) 95, 498, 670, 739, 1153, 1201, 1988, 2407
PspN4I GGNNCC 9 cut(s) 484, 496, 676, 1227, 1242, 1360, 1462, 1514, 1848
PspPI GGNCC 4 cut(s) 93, 245, 257, 435
PsuI RGATCY 3 cut(s) 1512, 1618, 1846
PsyI GACNNNGTC 1 cut(s) 2130
PvuII CAGCTG 1 cut(s) 476
RsaI GTAC 4 cut(s) 120, 604, 628, 1287
RsaNI GTAC 4 cut(s) 119, 603, 627, 1286
RseI CAYNNNNRTG 3 cut(s) 717, 1892, 1895
SacI GAGCTC 1 cut(s) 332
SaqAI TTAA 9 cut(s) 635, 662, 828, 845, 1344, 2001, 2057, 2189, 2372
SatI GCNGC 6 cut(s) 189, 273, 395, 2153, 2195, 2235
Sau96I GGNCC 4 cut(s) 93, 245, 257, 435
SchI GAGTC 4 cut(s) 388, 556, 1261, 2320
ScrFI CCNGG 8 cut(s) 97, 500, 672, 741, 1155, 1203, 1990, 2409
SduI GDGCHC 5 cut(s) 332, 340, 499, 1330, 2068
SfaNI GCATC 7 cut(s) 166, 518, 1569, 1729, 2107, 2139, 2422
SfcI CTRYAG 2 cut(s) 1188, 2511
SfuI TTCGAA 1 cut(s) 946
SinI GGWCC 3 cut(s) 93, 257, 435
SmiMI CAYNNNNRTG 3 cut(s) 717, 1892, 1895
SmlI CTYRAG 2 cut(s) 1693, 2252
SmoI CTYRAG 2 cut(s) 1693, 2252
SphI GCATGC 1 cut(s) 1715
SspI AATATT 1 cut(s) 1734
SstI GAGCTC 1 cut(s) 332
StyD4I CCNGG 8 cut(s) 95, 498, 670, 739, 1153, 1201, 1988, 2407
StyI CCWWGG 3 cut(s) 192, 976, 1319
TaaI ACNGT 4 cut(s) 242, 1405, 1894, 2604
TaiI ACGT 2 cut(s) 556, 632
TaqI TCGA 6 cut(s) 326, 340, 946, 1434, 1871, 2443
TaqII GACCGA 3 cut(s) 502, 632, 1536
TauI GCSGC 1 cut(s) 2197
TfiI GAWTC 4 cut(s) 45, 702, 1393, 1903
Tru1I TTAA 9 cut(s) 635, 662, 828, 845, 1344, 2001, 2057, 2189, 2372
Tru9I TTAA 9 cut(s) 635, 662, 828, 845, 1344, 2001, 2057, 2189, 2372
TscAI CASTG 4 cut(s) 511, 1410, 1872, 1897
TseFI GTSAC 2 cut(s) 1399, 1548
TseI GCWGC 5 cut(s) 188, 272, 394, 2152, 2234
Tsp45I GTSAC 2 cut(s) 1399, 1548
TspDTI ATGAA 7 cut(s) 100, 675, 679, 1603, 1640, 1660, 2552
TspGWI ACGGA 2 cut(s) 1410, 1753
TspRI CASTG 4 cut(s) 511, 1410, 1872, 1897
Tth111I GACNNNGTC 1 cut(s) 2130
VpaK11BI GGWCC 3 cut(s) 93, 257, 435
VspI ATTAAT 1 cut(s) 635
XagI CCTNNNNNAGG 1 cut(s) 252
XbaI TCTAGA 1 cut(s) 2123
XceI RCATGY 3 cut(s) 755, 1315, 1715
XcmI CCANNNNNNNNNTGG 1 cut(s) 1894
XmnI GAANNNNTTC 2 cut(s) 1107, 1197
ZraI GACGTC 1 cut(s) 554
Zsp2I ATGCAT 1 cut(s) 1376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.