DNA RNA polymerases superfamily protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 3 cut(s) | 293, 815, 829 |
| AccI | GTMKAC | 1 cut(s) | 758 |
| AciI | CCGC | 3 cut(s) | 468, 537, 623 |
| AclWI | GGATC | 3 cut(s) | 93, 218, 231 |
| AcsI | RAATTY | 2 cut(s) | 146, 161 |
| AdeI | CACNNNGTG | 1 cut(s) | 385 |
| AfaI | GTAC | 3 cut(s) | 23, 282, 726 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 467 |
| AgsI | TTSAA | 5 cut(s) | 124, 239, 415, 424, 835 |
| AjnI | CCWGG | 1 cut(s) | 365 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 167, 199 |
| AluBI | AGCT | 1 cut(s) | 443 |
| AluI | AGCT | 1 cut(s) | 443 |
| Alw26I | GTCTC | 3 cut(s) | 220, 504, 811 |
| AlwI | GGATC | 3 cut(s) | 93, 218, 231 |
| AoxI | GGCC | 1 cut(s) | 256 |
| ApeKI | GCWGC | 2 cut(s) | 529, 620 |
| ApoI | RAATTY | 2 cut(s) | 146, 161 |
| AspA2I | CCTAGG | 1 cut(s) | 899 |
| AspS9I | GGNCC | 3 cut(s) | 256, 903, 938 |
| AsuHPI | GGTGA | 1 cut(s) | 943 |
| AsuII | TTCGAA | 1 cut(s) | 203 |
| AsuNHI | GCTAGC | 1 cut(s) | 335 |
| AvaII | GGWCC | 2 cut(s) | 903, 938 |
| AvrII | CCTAGG | 1 cut(s) | 899 |
| BamHI | GGATCC | 1 cut(s) | 223 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 717, 749 |
| BbvI | GCAGC | 2 cut(s) | 541, 607 |
| BccI | CCATC | 3 cut(s) | 203, 652, 662 |
| BciT130I | CCWGG | 1 cut(s) | 367 |
| BcoDI | GTCTC | 3 cut(s) | 220, 504, 811 |
| BfaI | CTAG | 4 cut(s) | 336, 429, 558, 900 |
| BfmI | CTRYAG | 3 cut(s) | 113, 487, 822 |
| BfuAI | ACCTGC | 3 cut(s) | 293, 815, 829 |
| BglII | AGATCT | 1 cut(s) | 870 |
| BisI | GCNGC | 2 cut(s) | 530, 621 |
| BlnI | CCTAGG | 1 cut(s) | 899 |
| BlsI | GCNGC | 2 cut(s) | 531, 622 |
| Bme1390I | CCNGG | 1 cut(s) | 367 |
| Bme18I | GGWCC | 2 cut(s) | 903, 938 |
| BmgT120I | GGNCC | 3 cut(s) | 256, 903, 938 |
| BmiI | GGNNCC | 2 cut(s) | 225, 257 |
| BmrFI | CCNGG | 1 cut(s) | 367 |
| BmrI | ACTGGG | 1 cut(s) | 262 |
| BmsI | GCATC | 4 cut(s) | 106, 484, 516, 820 |
| BmtI | GCTAGC | 1 cut(s) | 339 |
| BmuI | ACTGGG | 1 cut(s) | 262 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 857, 889 |
| BpmI | CTGGAG | 1 cut(s) | 429 |
| Bpu14I | TTCGAA | 1 cut(s) | 203 |
| BpuEI | CTTGAG | 2 cut(s) | 580, 704 |
| Bsa29I | ATCGAT | 1 cut(s) | 748 |
| BsaAI | YACGTR | 1 cut(s) | 284 |
| BsaBI | GATNNNNATC | 1 cut(s) | 96 |
| BsaI | GGTCTC | 1 cut(s) | 811 |
| BsaJI | CCNNGG | 3 cut(s) | 187, 231, 899 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 167, 197, 204, 234, 427, 457 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 467 |
| Bse1I | ACTGG | 3 cut(s) | 257, 446, 895 |
| Bse3DI | GCAATG | 1 cut(s) | 339 |
| Bse8I | GATNNNNATC | 1 cut(s) | 96 |
| BseBI | CCWGG | 1 cut(s) | 367 |
| BseCI | ATCGAT | 1 cut(s) | 748 |
| BseDI | CCNNGG | 3 cut(s) | 187, 231, 899 |
| BseGI | GGATG | 4 cut(s) | 214, 592, 673, 772 |
| BseJI | GATNNNNATC | 1 cut(s) | 96 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 467 |
| BseMI | GCAATG | 1 cut(s) | 339 |
| BseMII | CTCAG | 3 cut(s) | 267, 384, 603 |
| BseNI | ACTGG | 3 cut(s) | 257, 446, 895 |
| BseXI | GCAGC | 2 cut(s) | 541, 607 |
| BshFI | GGCC | 1 cut(s) | 258 |
| BshVI | ATCGAT | 1 cut(s) | 748 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 467 |
| BsmAI | GTCTC | 3 cut(s) | 220, 504, 811 |
| BsmBI | CGTCTC | 1 cut(s) | 504 |
| BsmI | GAATGC | 1 cut(s) | 410 |
| BsnI | GGCC | 1 cut(s) | 258 |
| Bso31I | GGTCTC | 1 cut(s) | 811 |
| Bsp119I | TTCGAA | 1 cut(s) | 203 |
| Bsp143I | GATC | 5 cut(s) | 85, 223, 564, 870, 933 |
| BspACI | CCGC | 3 cut(s) | 468, 537, 623 |
| BspANI | GGCC | 1 cut(s) | 258 |
| BspCNI | CTCAG | 3 cut(s) | 268, 385, 604 |
| BspDI | ATCGAT | 1 cut(s) | 748 |
| BspHI | TCATGA | 1 cut(s) | 88 |
| BspLI | GGNNCC | 2 cut(s) | 225, 257 |
| BspMAI | CTGCAG | 1 cut(s) | 826 |
| BspMI | ACCTGC | 3 cut(s) | 293, 815, 829 |
| BspOI | GCTAGC | 1 cut(s) | 339 |
| BspPI | GGATC | 3 cut(s) | 93, 218, 231 |
| BspT104I | TTCGAA | 1 cut(s) | 203 |
| BspTNI | GGTCTC | 1 cut(s) | 811 |
| BsrDI | GCAATG | 1 cut(s) | 339 |
| BsrI | ACTGG | 3 cut(s) | 257, 446, 895 |
| BssECI | CCNNGG | 3 cut(s) | 187, 231, 899 |
| BssMI | GATC | 5 cut(s) | 85, 223, 564, 870, 933 |
| BssNAI | GTATAC | 1 cut(s) | 759 |
| BssT1I | CCWWGG | 3 cut(s) | 187, 231, 899 |
| Bst1107I | GTATAC | 1 cut(s) | 759 |
| Bst2UI | CCWGG | 1 cut(s) | 367 |
| Bst4CI | ACNGT | 4 cut(s) | 8, 271, 763, 942 |
| BstBAI | YACGTR | 1 cut(s) | 284 |
| BstBI | TTCGAA | 1 cut(s) | 203 |
| BstC8I | GCNNGC | 2 cut(s) | 337, 408 |
| BstDEI | CTNAG | 3 cut(s) | 276, 393, 612 |
| BstF5I | GGATG | 4 cut(s) | 214, 592, 673, 772 |
| BstKTI | GATC | 5 cut(s) | 88, 226, 567, 873, 936 |
| BstMAI | GTCTC | 3 cut(s) | 220, 504, 811 |
| BstMBI | GATC | 5 cut(s) | 85, 223, 564, 870, 933 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 341, 617 |
| BstNI | CCWGG | 1 cut(s) | 367 |
| BstSCI | CCNGG | 1 cut(s) | 365 |
| BstSFI | CTRYAG | 3 cut(s) | 113, 487, 822 |
| BstSNI | TACGTA | 1 cut(s) | 284 |
| BstV1I | GCAGC | 2 cut(s) | 541, 607 |
| BstX2I | RGATCY | 2 cut(s) | 223, 870 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 79, 651 |
| BstYI | RGATCY | 2 cut(s) | 223, 870 |
| BstZ17I | GTATAC | 1 cut(s) | 759 |
| Bsu15I | ATCGAT | 1 cut(s) | 748 |
| BsuRI | GGCC | 1 cut(s) | 258 |
| BsuTUI | ATCGAT | 1 cut(s) | 748 |
| BtsCI | GGATG | 4 cut(s) | 214, 592, 673, 772 |
| BtsI | GCAGTG | 2 cut(s) | 249, 930 |
| BtsIMutI | CAGTG | 4 cut(s) | 249, 453, 888, 930 |
| BveI | ACCTGC | 3 cut(s) | 293, 815, 829 |
| Cac8I | GCNNGC | 2 cut(s) | 337, 408 |
| CciI | TCATGA | 1 cut(s) | 88 |
| Cfr13I | GGNCC | 3 cut(s) | 256, 903, 938 |
| ClaI | ATCGAT | 1 cut(s) | 748 |
| CpoI | CGGWCCG | 1 cut(s) | 938 |
| CseI | GACGC | 1 cut(s) | 486 |
| Csp6I | GTAC | 3 cut(s) | 22, 281, 725 |
| CspI | CGGWCCG | 1 cut(s) | 938 |
| CviAII | CATG | 3 cut(s) | 89, 194, 533 |
| CviJI | RGCY | 6 cut(s) | 258, 350, 428, 443, 555, 838 |
| CviKI_1 | RGCY | 6 cut(s) | 258, 350, 428, 443, 555, 838 |
| CviQI | GTAC | 3 cut(s) | 22, 281, 725 |
| DdeI | CTNAG | 3 cut(s) | 276, 393, 612 |
| DpnI | GATC | 5 cut(s) | 87, 225, 566, 872, 935 |
| DpnII | GATC | 5 cut(s) | 85, 223, 564, 870, 933 |
| DraIII | CACNNNGTG | 1 cut(s) | 385 |
| Eco105I | TACGTA | 1 cut(s) | 284 |
| Eco130I | CCWWGG | 3 cut(s) | 187, 231, 899 |
| Eco31I | GGTCTC | 1 cut(s) | 811 |
| Eco47I | GGWCC | 2 cut(s) | 903, 938 |
| EcoRII | CCWGG | 1 cut(s) | 365 |
| EcoT14I | CCWWGG | 3 cut(s) | 187, 231, 899 |
| ErhI | CCWWGG | 3 cut(s) | 187, 231, 899 |
| Esp3I | CGTCTC | 1 cut(s) | 504 |
| FaeI | CATG | 3 cut(s) | 92, 197, 536 |
| FatI | CATG | 3 cut(s) | 88, 193, 532 |
| FblI | GTMKAC | 1 cut(s) | 758 |
| Fnu4HI | GCNGC | 2 cut(s) | 530, 621 |
| FokI | GGATG | 4 cut(s) | 221, 599, 680, 779 |
| Fsp4HI | GCNGC | 2 cut(s) | 530, 621 |
| FspBI | CTAG | 4 cut(s) | 336, 429, 558, 900 |
| GluI | GCNGC | 2 cut(s) | 530, 621 |
| GsuI | CTGGAG | 1 cut(s) | 429 |
| HaeIII | GGCC | 1 cut(s) | 258 |
| HgaI | GACGC | 1 cut(s) | 486 |
| Hin1II | CATG | 3 cut(s) | 92, 197, 536 |
| HincII | GTYRAC | 3 cut(s) | 363, 453, 715 |
| HindII | GTYRAC | 3 cut(s) | 363, 453, 715 |
| HinfI | GANTC | 5 cut(s) | 213, 318, 626, 730, 913 |
| HphI | GGTGA | 1 cut(s) | 943 |
| Hpy166II | GTNNAC | 6 cut(s) | 363, 379, 390, 453, 715, 759 |
| Hpy188I | TCNGA | 3 cut(s) | 649, 816, 938 |
| Hpy188III | TCNNGA | 5 cut(s) | 61, 89, 151, 558, 737 |
| Hpy8I | GTNNAC | 6 cut(s) | 363, 379, 390, 453, 715, 759 |
| HpyAV | CCTTC | 3 cut(s) | 199, 237, 734 |
| HpyCH4III | ACNGT | 4 cut(s) | 8, 271, 763, 942 |
| HpyCH4IV | ACGT | 4 cut(s) | 77, 283, 805, 981 |
| HpyCH4V | TGCA | 3 cut(s) | 529, 824, 923 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 341, 617 |
| HpyF3I | CTNAG | 3 cut(s) | 276, 393, 612 |
| HpySE526I | ACGT | 4 cut(s) | 77, 283, 805, 981 |
| Hsp92II | CATG | 3 cut(s) | 92, 197, 536 |
| Kzo9I | GATC | 5 cut(s) | 85, 223, 564, 870, 933 |
| LmnI | GCTCC | 2 cut(s) | 448, 865 |
| Lsp1109I | GCAGC | 2 cut(s) | 541, 607 |
| LweI | GCATC | 4 cut(s) | 106, 484, 516, 820 |
| MaeI | CTAG | 4 cut(s) | 336, 429, 558, 900 |
| MaeII | ACGT | 4 cut(s) | 77, 283, 805, 981 |
| MaeIII | GTNAC | 3 cut(s) | 271, 544, 886 |
| MalI | GATC | 5 cut(s) | 87, 225, 566, 872, 935 |
| MboI | GATC | 5 cut(s) | 85, 223, 564, 870, 933 |
| MboII | GAAGA | 3 cut(s) | 327, 725, 957 |
| MflI | RGATCY | 2 cut(s) | 223, 870 |
| MluCI | AATT | 2 cut(s) | 146, 161 |
| MlyI | GAGTC | 1 cut(s) | 222 |
| MmeI | TCCRAC | 1 cut(s) | 60 |
| MnlI | CCTC | 8 cut(s) | 76, 169, 271, 319, 388, 577, 728, 747 |
| MslI | CAYNNNNRTG | 2 cut(s) | 537, 649 |
| MspR9I | CCNGG | 1 cut(s) | 367 |
| Mva1269I | GAATGC | 1 cut(s) | 410 |
| MvaI | CCWGG | 1 cut(s) | 367 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 341, 617 |
| NdeII | GATC | 5 cut(s) | 85, 223, 564, 870, 933 |
| NheI | GCTAGC | 1 cut(s) | 335 |
| NlaIII | CATG | 3 cut(s) | 92, 197, 536 |
| NlaIV | GGNNCC | 2 cut(s) | 225, 257 |
| NmuCI | GTSAC | 2 cut(s) | 544, 886 |
| NspV | TTCGAA | 1 cut(s) | 203 |
| PagI | TCATGA | 1 cut(s) | 88 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 156 |
| PctI | GAATGC | 1 cut(s) | 410 |
| PfeI | GAWTC | 4 cut(s) | 318, 626, 730, 913 |
| PflFI | GACNNNGTC | 1 cut(s) | 950 |
| PkrI | GCNGC | 2 cut(s) | 531, 622 |
| PleI | GAGTC | 1 cut(s) | 221 |
| PpsI | GAGTC | 1 cut(s) | 221 |
| Ppu21I | YACGTR | 1 cut(s) | 284 |
| Psp6I | CCWGG | 1 cut(s) | 365 |
| PspGI | CCWGG | 1 cut(s) | 365 |
| PspN4I | GGNNCC | 2 cut(s) | 225, 257 |
| PspPI | GGNCC | 3 cut(s) | 256, 903, 938 |
| PstI | CTGCAG | 1 cut(s) | 826 |
| PsuI | RGATCY | 2 cut(s) | 223, 870 |
| PsyI | GACNNNGTC | 1 cut(s) | 950 |
| RsaI | GTAC | 3 cut(s) | 23, 282, 726 |
| RsaNI | GTAC | 3 cut(s) | 22, 281, 725 |
| RseI | CAYNNNNRTG | 2 cut(s) | 537, 649 |
| Rsr2I | CGGWCCG | 1 cut(s) | 938 |
| RsrII | CGGWCCG | 1 cut(s) | 938 |
| SatI | GCNGC | 2 cut(s) | 530, 621 |
| Sau3AI | GATC | 5 cut(s) | 85, 223, 564, 870, 933 |
| Sau96I | GGNCC | 3 cut(s) | 256, 903, 938 |
| SbfI | CCTGCAGG | 1 cut(s) | 826 |
| SchI | GAGTC | 1 cut(s) | 222 |
| ScrFI | CCNGG | 1 cut(s) | 367 |
| SdaI | CCTGCAGG | 1 cut(s) | 826 |
| SfaNI | GCATC | 4 cut(s) | 106, 484, 516, 820 |
| SfcI | CTRYAG | 3 cut(s) | 113, 487, 822 |
| SfuI | TTCGAA | 1 cut(s) | 203 |
| SinI | GGWCC | 2 cut(s) | 903, 938 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 537, 649 |
| SmlI | CTYRAG | 2 cut(s) | 595, 719 |
| SmoI | CTYRAG | 2 cut(s) | 595, 719 |
| SnaBI | TACGTA | 1 cut(s) | 284 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 826 |
| Sse9I | AATT | 2 cut(s) | 146, 161 |
| SsiI | CCGC | 3 cut(s) | 468, 537, 623 |
| SspMI | CTAG | 4 cut(s) | 336, 429, 558, 900 |
| StyD4I | CCNGG | 1 cut(s) | 365 |
| StyI | CCWWGG | 3 cut(s) | 187, 231, 899 |
| TaaI | ACNGT | 4 cut(s) | 8, 271, 763, 942 |
| TaiI | ACGT | 4 cut(s) | 80, 286, 808, 984 |
| TaqI | TCGA | 4 cut(s) | 150, 203, 313, 748 |
| TasI | AATT | 2 cut(s) | 146, 161 |
| TfiI | GAWTC | 4 cut(s) | 318, 626, 730, 913 |
| TscAI | CASTG | 4 cut(s) | 249, 453, 895, 930 |
| TseFI | GTSAC | 2 cut(s) | 544, 886 |
| TseI | GCWGC | 2 cut(s) | 529, 620 |
| Tsp45I | GTSAC | 2 cut(s) | 544, 886 |
| TspDTI | ATGAA | 4 cut(s) | 17, 263, 310, 698 |
| TspGWI | ACGGA | 3 cut(s) | 9, 680, 925 |
| TspRI | CASTG | 4 cut(s) | 249, 453, 895, 930 |
| Tth111I | GACNNNGTC | 1 cut(s) | 950 |
| VpaK11BI | GGWCC | 2 cut(s) | 903, 938 |
| XapI | RAATTY | 2 cut(s) | 146, 161 |
| XbaI | TCTAGA | 1 cut(s) | 557 |
| XmaJI | CCTAGG | 1 cut(s) | 899 |
| XmiI | GTMKAC | 1 cut(s) | 758 |
| XspI | CTAG | 4 cut(s) | 336, 429, 558, 900 |