RchiOBHm_Chr2g0130801

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000094
Physical Location & Seq
Forward (+)
46875287 .. 46877713
2427 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50221

Sequence Viewer

Length: 819 bp
ATGCCTCCTAGACGCCGGACTCGTGGGGAGACCCCTCCCATTCCAGGAGATGAGAATACTCCTGGAGGAATAGCGGAAGCTTTGGGACGTATTGTGCAGCAGTTGACTGCAGCGCTTCCGGGCTCCAGAACCGACTTTACCATGGAGCGAGCGAAGAGGCATGGAGCTTATAGCTTCTCCCATGCTCCTGATGCTATGGATGCCCAGAATTGGTTGAACAAAATGGAGAAGGTCTTCACTCAAATCCATTGCCCAGAGGATCGAAAAGTGGGTTTAGCAGTGGATTTTCTTGATGGTGTGGCTTTTGATTGGTGGGCTTTTACTAGCAGGGATTTAGAGAATGATGGCCCAATCACTTGGGAACAGTTCAAAGAACATTTTACTGAGAGATATTATGGTACAGCTATCCGTGACAGGATGAAGTATGAGTTCTTGCATCTACAGAAAGGGGACATGACCGTGACAGAGTTTGAGCAGCGGTTCACCCAGCTAGCCCAGTTTGTGCCTGATCTGGTTGCCACTGAGAGGGAGCGGATCTATAGGTTTGTTGATGGATTGGGGGGTAAGTATTGTGAGCAGTTGACAGGAGTGCCATTTAGTGATTATGCTGAGGTAGTTAATGCTGCTCTGCGACTTGAGACTATGTATATGTCTGGTGTCCGACCTCGAGATGTGGGTGGCCCCAGTCAGGGTCCATCCAAGAAGGCTGCTTCTACCTCTAGGACAGGATCTTCAGCAGGTTTAGGGTTGTCCACTTTTAGGGGAGATTCTGACGAATTTTTCCGAAAAGTGGGCCCCGCAGGTCCATTTTGGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

272

Amino Acids

30.58

Weight (kDa)

6.02

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 56 - 195 7.1e-09 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 92 - 186 1.1e-16 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000094)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42190
fragaria_vesca FvH4_1g22371 FvH4_1g23261 FvH4_1g27933 FvH4_1g27934 FvH4_1g29231 FvH4_2g02781 FvH4_2g08031 FvH4_2g08581 FvH4_3g06961 FvH4_3g06962 FvH4_3g13531 FvH4_3g14391 FvH4_3g14392 FvH4_3g18622 FvH4_3g18964 FvH4_3g26314 FvH4_3g28781 FvH4_3g30771 FvH4_3g30772 FvH4_3g31752 FvH4_3g32803 FvH4_3g35751 FvH4_3g35752 FvH4_4g02151 FvH4_4g02642 FvH4_4g05523 FvH4_4g05524 FvH4_4g06574 FvH4_4g06722 FvH4_4g08644 FvH4_4g08645 FvH4_4g08646 FvH4_4g08851 FvH4_4g08971 FvH4_4g09081 FvH4_4g09243 FvH4_4g09244 FvH4_4g09283 FvH4_4g10021 FvH4_4g10032 FvH4_4g10033 FvH4_4g10182 FvH4_4g10361 FvH4_4g12502 FvH4_4g12503 FvH4_4g13341 FvH4_4g13942 FvH4_4g13943 FvH4_4g13944 FvH4_4g14432 FvH4_4g14822 FvH4_4g14823 FvH4_4g15291 FvH4_4g15292 FvH4_4g15293 FvH4_4g15471 FvH4_4g15583 FvH4_4g15584 FvH4_4g15585 FvH4_4g15586 FvH4_4g15587 FvH4_4g15591 FvH4_4g15592 FvH4_4g15593 FvH4_4g16179 FvH4_4g18131 FvH4_4g21031 FvH4_4g22021 FvH4_4g22021 FvH4_4g22042 FvH4_5g03402 FvH4_5g07411 FvH4_5g13881 FvH4_5g15792 FvH4_5g24682 FvH4_5g24911 FvH4_5g25322 FvH4_5g25641 FvH4_5g36692 FvH4_5g38072 FvH4_5g38171 FvH4_6g05202 FvH4_6g08531 FvH4_6g16342 FvH4_6g21771 FvH4_6g23303 FvH4_6g23961 FvH4_6g25381 FvH4_6g27021 FvH4_6g27022 FvH4_6g30091 FvH4_6g30092 FvH4_7g02051 FvH4_7g06031 FvH4_7g07031 FvH4_7g07581 FvH4_7g08381 FvH4_7g11551 FvH4_7g19711 FvH4_7g25621 FvH4_7g29722
malus_domestica MD06G1134500.v1.1 MD09G1067600.v1.1 MD13G1145500.v1.1 MD15G1166500.v1.1 MD16G1270000.v1.1
prunus_persica Prupe.7G030900_v2.0.a1
pyrus_communis pycom01g00710 pycom01g03760 pycom03g10770 pycom04g02180 pycom05g08050 pycom06g04140 pycom06g11110 pycom07g07550 pycom07g21570 pycom08g17240 pycom09g13900 pycom09g19570 pycom10g22300 pycom11g03210 pycom11g13750 pycom11g24890 pycom12561g00270 pycom12668g00020 pycom12g11280 pycom12g20720 pycom12g20730 pycom13g21410 pycom13g21660 pycom14g06010 pycom14g06370 pycom14g12800 pycom16g21440 pycom16g22530 pycom17g02030 pycom420g00170 pycom50g00020 pycom5153684g00110 pycom520g00860 pycom581g00060
rosa_chinensis RchiOBHm_Chr0c08g0498091 RchiOBHm_Chr0c08g0498101 RchiOBHm_Chr1g0326991 RchiOBHm_Chr2g0084311 RchiOBHm_Chr2g0090701 RchiOBHm_Chr2g0098591 RchiOBHm_Chr2g0109491 RchiOBHm_Chr2g0109501 RchiOBHm_Chr2g0130801 RchiOBHm_Chr2g0145931 RchiOBHm_Chr2g0168091 RchiOBHm_Chr3g0457081 RchiOBHm_Chr3g0457091 RchiOBHm_Chr3g0467781 RchiOBHm_Chr3g0467791 RchiOBHm_Chr3g0493771 RchiOBHm_Chr3g0494051 RchiOBHm_Chr3g0496881 RchiOBHm_Chr4g0401391 RchiOBHm_Chr4g0414861 RchiOBHm_Chr4g0424081 RchiOBHm_Chr5g0009611 RchiOBHm_Chr5g0049881 RchiOBHm_Chr5g0050351 RchiOBHm_Chr5g0053791 RchiOBHm_Chr5g0078031 RchiOBHm_Chr6g0256481 RchiOBHm_Chr6g0271231 RchiOBHm_Chr6g0286381 RchiOBHm_Chr7g0197101 RchiOBHm_Chr7g0221891 RchiOBHm_Chr7g0237801 RchiOBHm_Chr7g0237821
rosa_multiflora Rmu_sc0000509.1_g000034 Rmu_sc0004751.1_g000014 Rmu_sc0008546.1_g000002 Rmu_sc0009320.1_g000003 Rmu_sc0010661.1_g000006 Rmu_sc0029652.1_g000002
rosa_roxburghii Rroxscaffold_10G00433150 Rroxscaffold_15G00447630 Rroxscaffold_26G00447790 Rroxscaffold_29G00441810 Rroxscaffold_32G00442860 Rroxscaffold_33G00439800 Rroxscaffold_34G00443230 Rroxscaffold_3G00220560 Rroxscaffold_3G00227370 Rroxscaffold_3G00239080 Rroxscaffold_3G00239090 Rroxscaffold_3G00273190 Rroxscaffold_4G00323530 Rroxscaffold_4G00326840 Rroxscaffold_57G00443110 Rroxscaffold_5G00338590 Rroxscaffold_5G00347530 Rroxscaffold_68G00446990 Rroxscaffold_76G00448570 Rroxscaffold_90G00448860
rosa_rugosa Rorug06G0233600
rosa_samantha Rh3CG302700 Rh6DG286700
rosa_wichuraiana Rw0G002280 Rw0G004080 Rw0G011830 Rw1G003690 Rw1G008800 Rw1G009130 Rw1G009140 Rw1G009150 Rw1G009160 Rw1G009410 Rw1G009580 Rw1G012770 Rw1G015850 Rw1G026860 Rw2G003780 Rw2G006480 Rw2G016520 Rw2G016960 Rw2G018170 Rw2G025180 Rw2G025510 Rw2G025610 Rw2G025750 Rw2G025920 Rw2G029950 Rw2G046360 Rw2G046370 Rw2G046380 Rw3G009070 Rw3G025820 Rw3G027340 Rw3G027900 Rw3G028150 Rw3G029060 Rw4G002440 Rw4G005960 Rw4G007520 Rw4G011970 Rw4G011980 Rw4G012190 Rw4G012530 Rw4G018490 Rw4G026380 Rw5G003970 Rw5G030920 Rw5G031780 Rw5G031900 Rw5G033030 Rw5G033040 Rw5G036330 Rw5G039730 Rw5G048110 Rw6G006670 Rw6G007910 Rw6G009720 Rw6G010990 Rw6G012930 Rw6G012940 Rw6G013420 Rw6G014690 Rw6G015290 Rw6G015790 Rw6G015920 Rw6G036510 Rw7G016650 Rw7G023140 Rw7G028650 Rw7G036450 Rw7G036460 Rw7G036910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 728, 791
AccBSI CCGCTC 1 cut(s) 532
AciI CCGC 4 cut(s) 74, 478, 532, 798
AclWI GGATC 3 cut(s) 267, 542, 736
AcsI RAATTY 1 cut(s) 776
AcuI CTGAAG 1 cut(s) 717
AcyI GRCGYC 1 cut(s) 13
AfaI GTAC 1 cut(s) 400
AfeI AGCGCT 1 cut(s) 114
AfiI CCNNNNNNNGG 7 cut(s) 44, 210, 525, 688, 689, 759, 790
AgsI TTSAA 2 cut(s) 217, 370
AjnI CCWGG 2 cut(s) 43, 61
AluBI AGCT 5 cut(s) 80, 167, 174, 404, 490
AluI AGCT 5 cut(s) 80, 167, 174, 404, 490
Alw26I GTCTC 2 cut(s) 23, 632
AlwI GGATC 3 cut(s) 267, 542, 736
Ama87I CYCGRG 1 cut(s) 666
Aor51HI AGCGCT 1 cut(s) 114
AoxI GGCC 3 cut(s) 346, 679, 793
ApaI GGGCCC 1 cut(s) 797
ApeKI GCWGC 5 cut(s) 97, 110, 475, 623, 707
ApoI RAATTY 1 cut(s) 776
Asp700I GAANNNNTTC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 6 cut(s) 347, 680, 692, 793, 794, 803
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 1 cut(s) 475
AsuNHI GCTAGC 1 cut(s) 490
AvaI CYCGRG 1 cut(s) 666
AvaII GGWCC 2 cut(s) 692, 803
BaeGI GKGCMC 1 cut(s) 797
BanII GRGCYC 2 cut(s) 125, 797
BauI CACGAG 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 226
BbvCI CCTCAGC 1 cut(s) 609
BbvI GCAGC 5 cut(s) 109, 122, 487, 610, 694
BccI CCATC 4 cut(s) 287, 338, 545, 703
BciT130I CCWGG 2 cut(s) 45, 63
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 2 cut(s) 23, 632
BfaI CTAG 4 cut(s) 9, 324, 491, 720
BfmI CTRYAG 3 cut(s) 108, 440, 538
BfoI RGCGCY 1 cut(s) 116
BfuAI ACCTGC 2 cut(s) 728, 791
BisI GCNGC 5 cut(s) 98, 111, 476, 624, 708
BlsI GCNGC 5 cut(s) 99, 112, 477, 625, 709
Bme1390I CCNGG 3 cut(s) 45, 63, 120
Bme18I GGWCC 2 cut(s) 692, 803
BmeT110I CYCGRG 1 cut(s) 666
BmgT120I GGNCC 6 cut(s) 347, 680, 692, 793, 794, 803
BmiI GGNNCC 5 cut(s) 124, 682, 693, 795, 796
BmrFI CCNGG 3 cut(s) 45, 63, 120
BmrI ACTGGG 2 cut(s) 490, 678
BmsI GCATC 3 cut(s) 181, 190, 445
BmtI GCTAGC 1 cut(s) 494
BmuI ACTGGG 2 cut(s) 490, 678
BpiI GAAGAC 1 cut(s) 226
BpmI CTGGAG 2 cut(s) 84, 109
Bpu10I CCTNAGC 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 656
BpuMI CCSGG 1 cut(s) 120
BsaHI GRCGYC 1 cut(s) 13
BsaI GGTCTC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 141
Bsc4I CCNNNNNNNGG 7 cut(s) 44, 210, 525, 688, 689, 759, 790
Bse1I ACTGG 2 cut(s) 496, 684
Bse3DI GCAATG 1 cut(s) 247
BseBI CCWGG 2 cut(s) 45, 63
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 3 cut(s) 205, 423, 695
BseLI CCNNNNNNNGG 7 cut(s) 44, 210, 525, 688, 689, 759, 790
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 3 cut(s) 375, 513, 600
BseNI ACTGG 2 cut(s) 496, 684
BseSI GKGCMC 1 cut(s) 797
BseXI GCAGC 5 cut(s) 109, 122, 487, 610, 694
BseYI CCCAGC 1 cut(s) 486
BsgI GTGCAG 1 cut(s) 116
BshFI GGCC 3 cut(s) 348, 681, 795
BsiHKCI CYCGRG 1 cut(s) 666
BsiSI CCGG 2 cut(s) 16, 119
BslFI GGGAC 2 cut(s) 99, 464
BslI CCNNNNNNNGG 7 cut(s) 44, 210, 525, 688, 689, 759, 790
BsmAI GTCTC 2 cut(s) 23, 632
BsmFI GGGAC 2 cut(s) 99, 464
BsnI GGCC 3 cut(s) 348, 681, 795
Bso31I GGTCTC 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 666
Bsp120I GGGCCC 1 cut(s) 793
Bsp1286I GDGCHC 2 cut(s) 125, 797
Bsp143I GATC 4 cut(s) 259, 508, 534, 728
Bsp19I CCATGG 1 cut(s) 141
BspACI CCGC 4 cut(s) 74, 478, 532, 798
BspANI GGCC 3 cut(s) 348, 681, 795
BspCNI CTCAG 3 cut(s) 376, 514, 601
BspLI GGNNCC 5 cut(s) 124, 682, 693, 795, 796
BspMAI CTGCAG 1 cut(s) 112
BspMI ACCTGC 2 cut(s) 728, 791
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 3 cut(s) 267, 542, 736
BspTNI GGTCTC 1 cut(s) 23
BsrBI CCGCTC 1 cut(s) 532
BsrDI GCAATG 1 cut(s) 247
BsrI ACTGG 2 cut(s) 496, 684
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 4 cut(s) 259, 508, 534, 728
BssNI GRCGYC 1 cut(s) 13
BssSI CACGAG 1 cut(s) 21
BssT1I CCWWGG 1 cut(s) 141
Bst2BI CACGAG 1 cut(s) 21
Bst2UI CCWGG 2 cut(s) 45, 63
Bst4CI ACNGT 2 cut(s) 366, 460
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 150, 492
BstDEI CTNAG 3 cut(s) 384, 522, 609
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 3 cut(s) 205, 423, 695
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 4 cut(s) 262, 511, 537, 731
BstMAI GTCTC 2 cut(s) 23, 632
BstMBI GATC 4 cut(s) 259, 508, 534, 728
BstMWI GCNNNNNNNGC 2 cut(s) 191, 200
BstNI CCWGG 2 cut(s) 45, 63
BstSCI CCNGG 3 cut(s) 43, 61, 118
BstSFI CTRYAG 3 cut(s) 108, 440, 538
BstSLI GKGCMC 1 cut(s) 797
BstV1I GCAGC 5 cut(s) 109, 122, 487, 610, 694
BstV2I GAAGAC 1 cut(s) 226
BstX2I RGATCY 2 cut(s) 534, 728
BstXI CCANNNNNNTGG 1 cut(s) 357
BstYI RGATCY 2 cut(s) 534, 728
BsuRI GGCC 3 cut(s) 348, 681, 795
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 3 cut(s) 205, 423, 695
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 2 cut(s) 285, 519
BveI ACCTGC 2 cut(s) 728, 791
Cac8I GCNNGC 2 cut(s) 150, 492
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 6 cut(s) 347, 680, 692, 793, 794, 803
CseI GACGC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 399
CviAII CATG 4 cut(s) 142, 161, 182, 454
CviQI GTAC 1 cut(s) 399
DdeI CTNAG 3 cut(s) 384, 522, 609
DpnI GATC 4 cut(s) 261, 510, 536, 730
DpnII GATC 4 cut(s) 259, 508, 534, 728
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco130I CCWWGG 1 cut(s) 141
Eco24I GRGCYC 2 cut(s) 125, 797
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 2 cut(s) 692, 803
Eco47III AGCGCT 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 717
Eco88I CYCGRG 1 cut(s) 666
EcoO109I RGGNCCY 1 cut(s) 794
EcoRII CCWGG 2 cut(s) 43, 61
EcoT14I CCWWGG 1 cut(s) 141
EcoT38I GRGCYC 2 cut(s) 125, 797
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 4 cut(s) 145, 164, 185, 457
FaqI GGGAC 2 cut(s) 99, 464
FatI CATG 4 cut(s) 141, 160, 181, 453
FauI CCCGC 1 cut(s) 805
Fnu4HI GCNGC 5 cut(s) 98, 111, 476, 624, 708
FokI GGATG 3 cut(s) 212, 430, 682
FriOI GRGCYC 2 cut(s) 125, 797
Fsp4HI GCNGC 5 cut(s) 98, 111, 476, 624, 708
FspBI CTAG 4 cut(s) 9, 324, 491, 720
GlaI GCGC 1 cut(s) 114
GluI GCNGC 5 cut(s) 98, 111, 476, 624, 708
GsaI CCCAGC 1 cut(s) 490
GsuI CTGGAG 2 cut(s) 84, 109
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 3 cut(s) 348, 681, 795
HapII CCGG 2 cut(s) 16, 119
HgaI GACGC 1 cut(s) 21
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 13
Hin1II CATG 4 cut(s) 145, 164, 185, 457
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 2 cut(s) 105, 582
HindII GTYRAC 2 cut(s) 105, 582
HindIII AAGCTT 1 cut(s) 78
HinfI GANTC 2 cut(s) 19, 767
HpaII CCGG 2 cut(s) 16, 119
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 4 cut(s) 105, 483, 582, 753
Hpy188I TCNGA 3 cut(s) 662, 772, 785
Hpy188III TCNNGA 4 cut(s) 126, 188, 290, 668
Hpy8I GTNNAC 4 cut(s) 105, 483, 582, 753
HpyAV CCTTC 2 cut(s) 223, 697
HpyCH4III ACNGT 2 cut(s) 366, 460
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 3 cut(s) 97, 110, 436
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 200
HpyF3I CTNAG 3 cut(s) 384, 522, 609
HpySE526I ACGT 1 cut(s) 88
Hsp92I GRCGYC 1 cut(s) 13
Hsp92II CATG 4 cut(s) 145, 164, 185, 457
HspAI GCGC 1 cut(s) 113
Kzo9I GATC 4 cut(s) 259, 508, 534, 728
LmnI GCTCC 5 cut(s) 128, 145, 164, 190, 529
Lsp1109I GCAGC 5 cut(s) 109, 122, 487, 610, 694
LweI GCATC 3 cut(s) 181, 190, 445
MaeI CTAG 4 cut(s) 9, 324, 491, 720
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 2 cut(s) 410, 460
MalI GATC 4 cut(s) 261, 510, 536, 730
MbiI CCGCTC 1 cut(s) 532
MboI GATC 4 cut(s) 259, 508, 534, 728
MboII GAAGA 3 cut(s) 166, 226, 723
MflI RGATCY 2 cut(s) 534, 728
MhlI GDGCHC 2 cut(s) 125, 797
MluCI AATT 2 cut(s) 208, 776
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 685
MnlI CCTC 9 cut(s) 15, 45, 59, 150, 250, 519, 604, 675, 727
MroXI GAANNNNTTC 1 cut(s) 233
MseI TTAA 1 cut(s) 618
MslI CAYNNNNRTG 1 cut(s) 458
MspA1I CMGCKG 1 cut(s) 478
MspI CCGG 2 cut(s) 16, 119
MspR9I CCNGG 3 cut(s) 45, 63, 120
MvaI CCWGG 2 cut(s) 45, 63
MwoI GCNNNNNNNGC 2 cut(s) 191, 200
NciI CCSGG 1 cut(s) 120
NcoI CCATGG 1 cut(s) 141
NdeII GATC 4 cut(s) 259, 508, 534, 728
NheI GCTAGC 1 cut(s) 490
NlaIII CATG 4 cut(s) 145, 164, 185, 457
NlaIV GGNNCC 5 cut(s) 124, 682, 693, 795, 796
NmuCI GTSAC 2 cut(s) 410, 460
PaeR7I CTCGAG 1 cut(s) 666
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 767
PfoI TCCNGGA 2 cut(s) 43, 61
PkrI GCNGC 5 cut(s) 99, 112, 477, 625, 709
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 43, 61
PspFI CCCAGC 1 cut(s) 486
PspGI CCWGG 2 cut(s) 43, 61
PspN4I GGNNCC 5 cut(s) 124, 682, 693, 795, 796
PspOMI GGGCCC 1 cut(s) 793
PspPI GGNCC 6 cut(s) 347, 680, 692, 793, 794, 803
PsrI GAACNNNNNNTAC 2 cut(s) 121, 153
PstI CTGCAG 1 cut(s) 112
PsuI RGATCY 2 cut(s) 534, 728
RsaI GTAC 1 cut(s) 400
RsaNI GTAC 1 cut(s) 399
RseI CAYNNNNRTG 1 cut(s) 458
SaqAI TTAA 1 cut(s) 618
SatI GCNGC 5 cut(s) 98, 111, 476, 624, 708
Sau3AI GATC 4 cut(s) 259, 508, 534, 728
Sau96I GGNCC 6 cut(s) 347, 680, 692, 793, 794, 803
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 3 cut(s) 45, 63, 120
SduI GDGCHC 2 cut(s) 125, 797
SfaNI GCATC 3 cut(s) 181, 190, 445
SfcI CTRYAG 3 cut(s) 108, 440, 538
Sfr274I CTCGAG 1 cut(s) 666
SinI GGWCC 2 cut(s) 692, 803
SlaI CTCGAG 1 cut(s) 666
SmiMI CAYNNNNRTG 1 cut(s) 458
SmlI CTYRAG 2 cut(s) 635, 666
SmoI CTYRAG 2 cut(s) 635, 666
Sse9I AATT 2 cut(s) 208, 776
SsiI CCGC 4 cut(s) 74, 478, 532, 798
SspMI CTAG 4 cut(s) 9, 324, 491, 720
StyD4I CCNGG 3 cut(s) 43, 61, 118
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 366, 460
TaiI ACGT 1 cut(s) 91
TaqI TCGA 2 cut(s) 262, 667
TasI AATT 2 cut(s) 208, 776
TfiI GAWTC 1 cut(s) 767
Tru1I TTAA 1 cut(s) 618
Tru9I TTAA 1 cut(s) 618
TscAI CASTG 2 cut(s) 285, 526
TseFI GTSAC 2 cut(s) 410, 460
TseI GCWGC 5 cut(s) 97, 110, 475, 623, 707
Tsp45I GTSAC 2 cut(s) 410, 460
TspDTI ATGAA 1 cut(s) 434
TspGWI ACGGA 1 cut(s) 398
TspRI CASTG 2 cut(s) 285, 526
VpaK11BI GGWCC 2 cut(s) 692, 803
XapI RAATTY 1 cut(s) 776
XhoI CTCGAG 1 cut(s) 666
XmnI GAANNNNTTC 1 cut(s) 233
XspI CTAG 4 cut(s) 9, 324, 491, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.